mRNA processing (Anopheles gambiae)

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ArcPathVisio Brace Ellipse EndoplasmicReticulum GolgiApparatus HexagonPathVisio MimDegradation Mitochondria Octagon PentagonPathVisio Rectangle RoundedRectangle SarcoplasmicReticulum TriangleEquilateralEast TrianglePathVisio none Misc.U5 snRNPRNA helicaseAdditional FactorsYYYYmRNA CappingiPo3Processing of Intron-Containing Pre-mRNACap Binding65Formation of the Spliceosomal E complexPrimary RNA transcriptexon 1Cleavage of mRNA at the 3'-endP-5 G capAAU6 snRNPRNA helicase ASR-binding sitesmRNA 3'-end processingPiAccessory ProteinsAdditional SR proteinsAAUAAAPoly(A) polInternal methylation of mRNA3RNAi pathwayexon 1mRNA splicing (major pathway)hnRNP regulatorsCFIexon 2snRNP Sm core complexUG3U4:U5:U6 tri-snRNP complexexon 2(2c)UGRngtt (capping enzyme)Additional FactorsSR protein kinasesU4 snRNPsplicing factor SF3A5Additional FactorsAGKinases Phosphorylating RS domains?Formation of the Spliceosomal B complexFormation of pre-mRNPsSR-binding sitesFormation of the Spliceosomal A complexsplicesome associated helicasesCPSF53Rnmt (methyltransferase)5SR-repressor proteinsSerine/Argenine Rich Proteins(SR)pre-mRNALariat Formation and 5'-Splice Site CleavageYYYYFormation of the active Spliceosomal C complexU4/U635(2a)right click on blue text for detailed informationexon 15AAhnRNPsP5mRNA polyadenylationexon 13CF Isplicing factor SF3BFormation of the Spliceosomal B complexPutative Alternative SplicingRegulatorsMethylation of mRNAFormation of the Spliceosomal A complexU5YYYYU6Formation of the Spliceosomal E complexU2exon 1SR protein phosphatasesYYYYdegradedAGheterogeneous nuclear ribonucleoproteinsexon 1U2AFCPSFAGexon 2Poly(A) polymerase alpha3mRNA splice site selection53ARegulation ofAlternative SplicingYYYY5U2AFU4Note: New participating members shown at each stepSR-proteinsU1 snRNP3CAAGSF3b14bexon 2(1)SR-proteinsU2 snRNPAGCstFYYYYU1CstFU1 snRNPSpt5mRNA cappingAGsnRNP Sm core complexCF IISR-kinases5U2 snRNPs3Formation of the Spliceosomal C complex(2b)exon 2Formation of pre-mRNPsInternal methylation of mRNAexon 2(3)intron(2)5CF IIsnRNP Sm core complexAAAAAAAPoly(A)pb IISR-proteins5U5A5Polr2aGUPoly(A)-binding protein II3U2 snRNPCleavage at the 3'-Splice-Site and Exon LigationSR-phosphatases3AgaP_AGAP009296AgaP_AGAP005298AgaP_AGAP004090AgaP_AGAP009093AgaP_AGAP009477AgaP_AGAP003428AgaP_AGAP009905AgaP_AGAP006108SF4AgaP_AGAP008263PSKH1PCBP2AgaP_AGAP008122AgaP_AGAP004765AgaP_AGAP005322SFRS10SRPK2SSFA1AgaP_AGAP004610PRPF4BCUGBP1AgaP_AGAP007701AgaP_AGAP002895AgaP_AGAP002193AgaP_AGAP003794AgaP_AGAP008577AgaP_AGAP004682FUSIP1PAPOLAAgaP_AGAP002614DICER1AgaP_AGAP005117RNU2AgaP_AGAP003462AgaP_AGAP003635AgaP_AGAP011494AgaP_AGAP005136FUSIP1AgaP_AGAP001064AgaP_AGAP006171AgaP_AGAP007242AgaP_AGAP008528AgaP_AGAP002265SFRS4CLK2AgaP_AGAP006885GMPSNRPNCLK4HRMT1L1DDX20NONOAgaP_AGAP004950AgaP_AGAP002307AgaP_AGAP003945SNRPNATPAgaP_AGAP006599SFRS14AgaP_AGAP005366AgaP_AGAP008925AgaP_AGAP002947AgaP_AGAP006885AgaP_AGAP008925AgaP_AGAP007212CLK1AgaP_AGAP000847PTBP2U5-116KDAgaP_AGAP008433AgaP_AGAP001645AgaP_AGAP009570AgaP_AGAP011149AgaP_AGAP002144U4 snRNAAgaP_AGAP001792AgaP_AGAP005640SSFA1AgaP_AGAP009506SSFA1U5 snRNAAgaP_AGAP002144AgaP_AGAP008298AgaP_AGAP005136AgaP_AGAP011035AgaP_AGAP011328SF3A3AgaP_AGAP001460AgaP_AGAP002374HNRPA2B1AgaP_AGAP001419HNRPH2HNRPUHNRPA3P1HNRPKAgaP_AGAP000399AgaP_AGAP006668HNRPCAgaP_AGAP012054RBMXHNRPH1U1 snRNAAgaP_AGAP006755AgaP_AGAP011637AgaP_AGAP002956AgaP_AGAP002908AgaP_AGAP001224CPSF4AgaP_AGAP002474AgaP_AGAP011340SFRS9AgaP_AGAP010496AgaP_AGAP004592AgaP_AGAP007325SFRS2SFRS5AgaP_AGAP008303NCBP2AgaP_AGAP001195AgaP_AGAP003019AgaP_AGAP004414AgaP_AGAP010918AgaP_AGAP002776AgaP_AGAP011907AgaP_AGAP005549AgaP_AGAP006240AgaP_AGAP001538AgaP_AGAP000178AgaP_AGAP012380AgaP_AGAP007246AgaP_AGAP003936AgaP_AGAP002658SNRPEAgaP_AGAP002706AgaP_AGAP005523AgaP_AGAP005142AgaP_AGAP005021AgaP_AGAP007810AgaP_AGAP003460AgaP_AGAP007670SNRPB2Name: mRNA processingLast Modified: 10/17/2013Organism: Anopheles gambiae


Description

This process describes the conversion of precursor messenger RNA into mature messenger RNA (mRNA). The pre-mRNA molecule undergoes three main modifications. These modifications are 5' capping, 3' polyadenylation, and RNA splicing, which occur in the cell nucleus before the RNA is translated.

5' Capping: Capping of the pre-mRNA involves the addition of 7-methylguanosine (m7G) to the 5' end. The cap protects the 5' end of the primary RNA transcript from attack by ribonucleases that have specificity to the 3'5' phosphodiester bonds.

3' Processing: The pre-mRNA processing at the 3' end of the RNA molecule involves cleavage of its 3' end and then the addition of about 200 adenine residues to form a poly(A) tail. As the poly(A) tails is synthesised, it binds multiple copies of poly(A) binding protein, which protects the 3'end from ribonuclease digestion.

Splicing: RNA splicing is the process by which introns, regions of RNA that do not code for protein, are removed from the pre-mRNA and the remaining exons connected to re-form a single continuous molecule.

Description adapted from Wikipedia: http://en.wikipedia.org/wiki/Post-transcriptional_modification

Comments

GenMAPP notes 
Gene lists from obtained from InterPro 9-23-2003: Mm RNA-binding region RNP-1 (RNA recognition motif)
GenMAPP remarks 
Adapted from http://www.reactome.org.
HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP411(r30272) with a 65% conversion rate.

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Homology Converted

Ontology Terms

Cell Type : plant cell
 

Bibliography

No bibliography


History

View all...
CompareRevisionActionTimeUserComment
122784
Approved
view23:28, 17 May 2022AlexanderPicocleaning up broken comments
105892view11:21, 16 August 2019MkutmonHMDB identifier unification
94573view17:53, 28 September 2017AlexanderPicoremoved nested group
71445view19:12, 17 October 2013MaintBotAutomated update of data sources
68444view19:18, 5 July 2013MaintBotUpdated to 2013 gpml schema
67494view11:09, 26 June 2013DdiglesOntology Term : 'spliceosome pathway' added !
40476view18:47, 1 March 2011MaintBotRemoved redundant pathway information and comments
35234view19:22, 11 February 2010KhanspersPeriodical save, work in progress
35233view19:10, 11 February 2010KhanspersModified description
33733view23:44, 8 December 2009MaintBotAutomatic update of empty xrefs
32285view13:09, 15 August 2009MaintBotFixed text labels
31836view12:28, 14 August 2009MaintBotFixed group labels
31313view20:14, 13 August 2009MaintBotFixed text labels
30798view23:44, 29 July 2009MaintBotNew pathway

External references

DataNodes

View all...
Name  ↓Type  ↓Database reference  ↓Comment  ↓
ATPMetabolite
AgaP_AGAP000178GeneProduct1272086 (Entrez Gene)
AgaP_AGAP000399GeneProduct1271847 (Entrez Gene)
AgaP_AGAP000847GeneProduct1277360 (Entrez Gene)
AgaP_AGAP001064GeneProduct1278678 (Entrez Gene)
AgaP_AGAP001195GeneProduct1281974 (Entrez Gene)
AgaP_AGAP001224GeneProduct1281946 (Entrez Gene)
AgaP_AGAP001419GeneProduct1281757 (Entrez Gene)
AgaP_AGAP001460GeneProduct1281715 (Entrez Gene)
AgaP_AGAP001538GeneProduct1281638 (Entrez Gene)
AgaP_AGAP001645GeneProduct1281527 (Entrez Gene)
AgaP_AGAP001792GeneProduct1281323 (Entrez Gene) GenBank sequence: M10329
AgaP_AGAP002144GeneProduct1269414 (Entrez Gene)
AgaP_AGAP002193GeneProduct1269364 (Entrez Gene)
AgaP_AGAP002265GeneProduct1269293 (Entrez Gene) PMID: 14559993. SRrp86 is a unique member of the SR protein superfamily containing one RNA recognition motif and two serine-arginine (SR)-rich domains separated by an unusual glutamic acid-lysine (EK)-rich region. Previously, we showed that SRrp86 could regulate alternative splicing by both positively and negatively modulating the activity of other SR proteins and that the unique EK domain could inhibit both constitutive and alternative splicing. These functions were most consistent with the model in which SRrp86 functions by interacting with and thereby modulating the activity of target proteins. To identify the specific proteins that interact with SRrp86, we used a yeast two-hybrid library screen and immunoprecipitation coupled to mass spectrometry. We show that SRrp86 interacts with all of the core SR proteins, as well as a subset of other splicing regulatory proteins, including SAF-B, hnRNP G, YB-1, and p72. In contrast to previous results that showed activation of SRp20 by SRrp86, we now show that SAF-B, hnRNP G, and 9G8 all antagonize the activity of SRrp86. Overall, we conclude that not only does SRrp86 regulate SR protein activity but that it is, in turn, regulated by other splicing factors to control alternative splice site selection.
AgaP_AGAP002307GeneProduct1273662 (Entrez Gene)
AgaP_AGAP002374GeneProduct3290608 (Entrez Gene)
AgaP_AGAP002474GeneProduct1273485 (Entrez Gene)
AgaP_AGAP002614GeneProduct1273354 (Entrez Gene)
AgaP_AGAP002658GeneProduct1273301 (Entrez Gene)
AgaP_AGAP002706GeneProduct1273262 (Entrez Gene)
AgaP_AGAP002776GeneProduct1273194 (Entrez Gene)
AgaP_AGAP002895GeneProduct1273072 (Entrez Gene)
AgaP_AGAP002908GeneProduct1273053 (Entrez Gene)
AgaP_AGAP002947GeneProduct1273015 (Entrez Gene)
AgaP_AGAP002956GeneProduct1273007 (Entrez Gene)
AgaP_AGAP003019GeneProduct1272933 (Entrez Gene)
AgaP_AGAP003428GeneProduct1272801 (Entrez Gene)
AgaP_AGAP003460GeneProduct1272829 (Entrez Gene)
AgaP_AGAP003462GeneProduct1272833 (Entrez Gene)
AgaP_AGAP003635GeneProduct1274299 (Entrez Gene)
AgaP_AGAP003794GeneProduct1271533 (Entrez Gene)
AgaP_AGAP003936GeneProduct1278762 (Entrez Gene)
AgaP_AGAP003945GeneProduct1278776 (Entrez Gene)
AgaP_AGAP004090GeneProduct1270887 (Entrez Gene)
AgaP_AGAP004414GeneProduct1274558 (Entrez Gene)
AgaP_AGAP004592GeneProduct1275942 (Entrez Gene)
AgaP_AGAP004610GeneProduct1275923 (Entrez Gene) PMID: 14729963
AgaP_AGAP004682GeneProduct1268691 (Entrez Gene)
AgaP_AGAP004765GeneProduct1278460 (Entrez Gene)
AgaP_AGAP004950GeneProduct1275761 (Entrez Gene)
AgaP_AGAP005021GeneProduct4576284 (Entrez Gene)
AgaP_AGAP005117GeneProduct1274794 (Entrez Gene)
AgaP_AGAP005136GeneProduct1274814 (Entrez Gene)
AgaP_AGAP005142GeneProduct1274820 (Entrez Gene)
AgaP_AGAP005298GeneProduct1270385 (Entrez Gene)
AgaP_AGAP005322GeneProduct1276029 (Entrez Gene) PMID: 12773558
AgaP_AGAP005366GeneProduct3289953 (Entrez Gene)
AgaP_AGAP005523GeneProduct1276207 (Entrez Gene)
AgaP_AGAP005549GeneProduct1276233 (Entrez Gene)
AgaP_AGAP005640GeneProduct1276326 (Entrez Gene)
AgaP_AGAP006108GeneProduct4576730 (Entrez Gene)
AgaP_AGAP006171GeneProduct1276838 (Entrez Gene) PMID: 12773558
AgaP_AGAP006240GeneProduct1276901 (Entrez Gene)
AgaP_AGAP006599GeneProduct1277182 (Entrez Gene)
AgaP_AGAP006668GeneProduct4576768 (Entrez Gene)
AgaP_AGAP006755GeneProduct1270305 (Entrez Gene)
AgaP_AGAP006885GeneProduct1270195 (Entrez Gene)
AgaP_AGAP007212GeneProduct1269919 (Entrez Gene)
AgaP_AGAP007242GeneProduct1269904 (Entrez Gene)
AgaP_AGAP007246GeneProduct1269901 (Entrez Gene)
AgaP_AGAP007325GeneProduct1269848 (Entrez Gene)
AgaP_AGAP007670GeneProduct1269557 (Entrez Gene)
AgaP_AGAP007701GeneProduct1269532 (Entrez Gene)
AgaP_AGAP007810GeneProduct1278148 (Entrez Gene)
AgaP_AGAP008122GeneProduct1277833 (Entrez Gene)
AgaP_AGAP008263GeneProduct1277723 (Entrez Gene)
AgaP_AGAP008298GeneProduct1277686 (Entrez Gene)
AgaP_AGAP008303GeneProduct1277682 (Entrez Gene)
AgaP_AGAP008433GeneProduct1277542 (Entrez Gene)
AgaP_AGAP008528GeneProduct1277444 (Entrez Gene)
AgaP_AGAP008577GeneProduct1275439 (Entrez Gene)
AgaP_AGAP008925GeneProduct1279895 (Entrez Gene)
AgaP_AGAP009093GeneProduct1280046 (Entrez Gene)
AgaP_AGAP009296GeneProduct1280262 (Entrez Gene)
AgaP_AGAP009477GeneProduct1271433 (Entrez Gene)
AgaP_AGAP009506GeneProduct1271405 (Entrez Gene)
AgaP_AGAP009570GeneProduct1278931 (Entrez Gene) PMID: 14729963
AgaP_AGAP009905GeneProduct1279319 (Entrez Gene)
AgaP_AGAP010496GeneProduct1275237 (Entrez Gene) Antagonist splicing factor
AgaP_AGAP010918GeneProduct1271032 (Entrez Gene)
AgaP_AGAP011035GeneProduct1269464 (Entrez Gene)
AgaP_AGAP011149GeneProduct1270778 (Entrez Gene)
AgaP_AGAP011328GeneProduct1270609 (Entrez Gene)
AgaP_AGAP011340GeneProduct1270599 (Entrez Gene)
AgaP_AGAP011494GeneProduct1278378 (Entrez Gene)
AgaP_AGAP011637GeneProduct1280995 (Entrez Gene)
AgaP_AGAP011907GeneProduct1280756 (Entrez Gene)
AgaP_AGAP012054GeneProduct1280613 (Entrez Gene)
AgaP_AGAP012380GeneProduct1280333 (Entrez Gene)
CLK1GeneProduct
CLK2GeneProduct
CLK4GeneProduct
CPSF4GeneProduct
CUGBP1GeneProduct
DDX20GeneProduct
DICER1GeneProduct
FUSIP1GeneProduct
GMPMetaboliteHMDB0001397 (HMDB)
HNRPA2B1GeneProduct
HNRPA3P1GeneProduct
HNRPCGeneProduct
HNRPH1GeneProduct
HNRPH2GeneProduct
HNRPKGeneProduct
HNRPUGeneProduct
HRMT1L1GeneProduct
NCBP2GeneProduct
NONOGeneProduct
PAPOLAGeneProduct
PCBP2GeneProduct
PRPF4BGeneProduct
PSKH1GeneProductPMID: 12466556
PTBP2GeneProduct
RBMXGeneProduct
RNU2GeneProductGenBank sequence: K00027
SF3A3GeneProduct
SF4GeneProductinferred from: SURP 2, G patch protein, UniProt:O60378
SFRS10GeneProduct
SFRS14GeneProduct
SFRS2GeneProduct
SFRS4GeneProduct
SFRS5GeneProduct
SFRS9GeneProductPMID: 12738786, PMID: 12024014 (associated with hnRNP A1 splicing)
SNRPB2GeneProduct
SNRPEGeneProduct
SNRPNGeneProduct
SRPK2GeneProductPMID: 12773558
SSFA1GeneProduct
U1 snRNARnaGenBank sequence: J00645
U4 snRNAGeneProductGenBank sequence: M10328, M18004
U5 snRNAGeneProductGenBank sequence: AB021173
U5-116KDGeneProduct

Annotated Interactions

No annotated interactions
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