Circadian rhythm genes (Homo sapiens)

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Revision as of 12:05, 22 May 2021 by Eweitz (Talk | contribs)
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basic energy metabolismosteoporosisepigeneticstight junctionsion channelrenal functionprotein degradationhormoneangiogenesiscell proliferation /cell cycle regulationapoptosisimmune systemDNA repairneurotransmitter / receptor / functioncircadian rythm regulationsignalingtranscription factorDNA / RNA handlingfood / appetite regulationothersblood coagulationAANATNTRK3SFTPCNKX2-1GSK3BARNTLARNTNR1H3BHLHE40KLF10PER1FBXL3EP300RORBSLC6A4NMSKMT2ASETXHNRNPUGHRLCST3CIPCCRY2DRD2CARTPTPAX4KCNMA1PRKCDBPNAMPTARNTL2ID3PRMT5TPH1HCRTR2HDAC1ATF5HS3ST2HEBP1MC3RNOCTCIPCMETTL3SERPINE1MTA1ADORA2AMTTPPROK1SUV39H2NAGLUGNAQCIPCDRD3PHLPP1FASDHX9PPP1CAFBXW11OGTPROKR1PSPC1MTNR1BNTRK1PROKR2CCAR2ID2OPN4CLOCKQ59FM5TYMSCIPCNFIL3CREB1SIRT1USP2HCRTR2SIK1PRKAA1CPT1AUBCKDM5AUTS2RHCRTR1AVPCSNK1DLGR4ATF4PRKDCNONOJUNDBTRCUTS2PROX1KCND2MTNR1ANR2F6TPH2PER2PMLCHRM1HNRNPDFBXL21RAI1EZH2NRIP1CREMNGFRCSNK1ESTARBHLHE41PRKAA2GHRHNCOA2ID4NR1D1NCOA2PPARGC1ANR1D2SLC9A3AHCYDBPCIPCPRF1CUL1HDAC2UBE3ANPAS2IL6CDK4ZFHX3NPAS2C1orf51NPSHCRTR1PPARAADCY1KCNH7SFPQHDAC3SREBF1TIMELESSCRHEGR3RELBSIN3APPP1CBPPP1CBRBM4BOPRL1CRTC1ROCK2RPS27ADYRK1APRKG2TNFRSF11AKLF9SKP1PPP1CCHNF1BJUNGNA11SIX3NCOR1MAGED1DBPPER3OPN3CRY1TOP1PPARGHTR7CIARTRBM4ARNT2PASD1RORAMAGEL2DRD1GFPT1THRAP3PROK2CRXUBA52LEPMAPK8SUV39H1MAPK10MYBBP1APTENAGRPADIPOQBTBD9NPY2RADCY1RORCCHRNB2MAPK9PTGDSDDCSOX14ATOH7F7ADAADORA1DRD4DDX5TP53AHRTHPRKCGTOP2AEGR1NOS2HOMER1NLGN1CLDN4HOMER1NRIP1PROKR2C1orf51AGRPPROKR1SIRT1PROK2BHLHE41PRKAA1


Description

This is currently not a pathway but a list of circadian rhythm related genes and proteins. The source for this information is the gene ontology. The genes and proteins were filtered for "circadian rhythm" annotation (taxon = homo sapiens). According to supplementary information they were clustered in major (neurotransmitters, hormons, appetite regulation and immune system) and minor groups. Proteins on this pathway have targeted assays available via the CPTAC Assay Portal

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Quality Tags

Ontology Terms

 

Bibliography

No bibliography


History

View all...
CompareRevisionActionTimeUserComment
117682view12:05, 22 May 2021EweitzModified title
108782view14:35, 29 January 2020DeSlReplaced A6NMV7 (unreviewed) with O43613 (reviewed) for HCRTR1 geneProduct
106357view21:39, 21 August 2019KhanspersModified description
105555view06:13, 9 August 2019KhanspersModified description
102861view14:37, 25 January 2019DdiglesModified title
87161view19:16, 18 July 2016MkutmonOntology Term : 'regulatory pathway' added !
84573view14:11, 3 March 2016Mkutmonadded missing graph ids
83945view09:07, 5 January 2016FehrhartModified description
83875view15:45, 18 December 2015FehrhartNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
AANATGeneProductQ16613 (Uniprot-TrEMBL)
ADAGeneProductP00813 (Uniprot-TrEMBL)
ADCY1GeneProductQ08828 (Uniprot-TrEMBL)
ADIPOQGeneProductQ15848 (Uniprot-TrEMBL)
ADORA1GeneProductP30542 (Uniprot-TrEMBL)
ADORA2AGeneProductP29274 (Uniprot-TrEMBL)
AGRPGeneProductO00253 (Uniprot-TrEMBL)
AHCYGeneProductP23526 (Uniprot-TrEMBL)
AHRGeneProductP35869 (Uniprot-TrEMBL)
ARNT2GeneProductQ9HBZ2 (Uniprot-TrEMBL)
ARNTL2GeneProductQ8WYA1 (Uniprot-TrEMBL)
ARNTLGeneProductO00327 (Uniprot-TrEMBL)
ARNTGeneProductP27540 (Uniprot-TrEMBL)
ATF4GeneProductP18848 (Uniprot-TrEMBL)
ATF5GeneProductQ9Y2D1 (Uniprot-TrEMBL)
ATOH7GeneProductQ8N100 (Uniprot-TrEMBL)
AVPGeneProductP01185 (Uniprot-TrEMBL)
BHLHE40GeneProductO14503 (Uniprot-TrEMBL)
BHLHE41GeneProductQ9C0J9 (Uniprot-TrEMBL)
BTBD9GeneProductQ96Q07 (Uniprot-TrEMBL)
BTRCGeneProductQ9Y297 (Uniprot-TrEMBL)
C1orf51GeneProductQ5TB13 (Uniprot-TrEMBL)
CARTPTGeneProductQ16568 (Uniprot-TrEMBL)
CCAR2GeneProductQ8N163 (Uniprot-TrEMBL)
CDK4GeneProductP11802 (Uniprot-TrEMBL)
CHRM1GeneProductP11229 (Uniprot-TrEMBL)
CHRNB2GeneProductP17787 (Uniprot-TrEMBL)
CIARTGeneProductQ8N365 (Uniprot-TrEMBL)
CIPCGeneProductG3V3Y7 (Uniprot-TrEMBL)
CIPCGeneProductG3V405 (Uniprot-TrEMBL)
CIPCGeneProductG3V5J4 (Uniprot-TrEMBL)
CIPCGeneProductG3V5Y7 (Uniprot-TrEMBL)
CIPCGeneProductQ9C0C6 (Uniprot-TrEMBL)
CLDN4GeneProductO14493 (Uniprot-TrEMBL)
CLOCKGeneProductO15516 (Uniprot-TrEMBL)
CPT1AGeneProductP50416 (Uniprot-TrEMBL)
CREB1GeneProductP16220 (Uniprot-TrEMBL)
CREMGeneProductQ03060 (Uniprot-TrEMBL)
CRHGeneProductP06850 (Uniprot-TrEMBL)
CRTC1GeneProductQ6UUV9 (Uniprot-TrEMBL)
CRXGeneProductO43186 (Uniprot-TrEMBL)
CRY1GeneProductQ16526 (Uniprot-TrEMBL)
CRY2GeneProductQ49AN0 (Uniprot-TrEMBL)
CSNK1DGeneProductP48730 (Uniprot-TrEMBL)
CSNK1EGeneProductP49674 (Uniprot-TrEMBL)
CST3GeneProductP01034 (Uniprot-TrEMBL)
CUL1GeneProductQ13616 (Uniprot-TrEMBL)
DBPGeneProductM0QXP1 (Uniprot-TrEMBL)
DBPGeneProductQ10586 (Uniprot-TrEMBL)
DDCGeneProductP20711 (Uniprot-TrEMBL)
DDX5GeneProductP17844 (Uniprot-TrEMBL)
DHX9GeneProductQ08211 (Uniprot-TrEMBL)
DRD1GeneProductP21728 (Uniprot-TrEMBL)
DRD2GeneProductP14416 (Uniprot-TrEMBL)
DRD3GeneProductP35462 (Uniprot-TrEMBL)
DRD4GeneProductP21917 (Uniprot-TrEMBL)
DYRK1AGeneProductQ13627 (Uniprot-TrEMBL)
EGR1GeneProductP18146 (Uniprot-TrEMBL)
EGR3GeneProductQ06889 (Uniprot-TrEMBL)
EP300GeneProductQ09472 (Uniprot-TrEMBL)
EZH2GeneProductQ15910 (Uniprot-TrEMBL)
F7GeneProductP08709 (Uniprot-TrEMBL)
FASGeneProductP25445 (Uniprot-TrEMBL)
FBXL21GeneProductENSG00000164616 (Ensembl)
FBXL3GeneProductQ9UKT7 (Uniprot-TrEMBL)
FBXW11GeneProductQ9UKB1 (Uniprot-TrEMBL)
GFPT1GeneProductQ06210 (Uniprot-TrEMBL)
GHRHGeneProductP01286 (Uniprot-TrEMBL)
GHRLGeneProductQ9UBU3 (Uniprot-TrEMBL)
GNA11GeneProductP29992 (Uniprot-TrEMBL)
GNAQGeneProductENSG00000156052 (Ensembl)
GSK3BGeneProductP49841 (Uniprot-TrEMBL)
HCRTR1GeneProductO43613 (Uniprot-TrEMBL)
HCRTR2GeneProductO43614 (Uniprot-TrEMBL)
HDAC1GeneProductQ13547 (Uniprot-TrEMBL)
HDAC2GeneProductQ92769 (Uniprot-TrEMBL)
HDAC3GeneProductO15379 (Uniprot-TrEMBL)
HEBP1GeneProductQ9NRV9 (Uniprot-TrEMBL)
HNF1BGeneProductP35680 (Uniprot-TrEMBL)
HNRNPDGeneProductQ14103 (Uniprot-TrEMBL)
HNRNPUGeneProductQ00839 (Uniprot-TrEMBL)
HOMER1GeneProductQ86YM7 (Uniprot-TrEMBL)
HS3ST2GeneProductQ9Y278 (Uniprot-TrEMBL)
HTR7GeneProductP34969 (Uniprot-TrEMBL)
ID2GeneProductQ02363 (Uniprot-TrEMBL)
ID3GeneProductQ02535 (Uniprot-TrEMBL)
ID4GeneProductP47928 (Uniprot-TrEMBL)
IL6GeneProductP05231 (Uniprot-TrEMBL)
JUNDGeneProductP17535 (Uniprot-TrEMBL)
JUNGeneProductP05412 (Uniprot-TrEMBL)
KCND2GeneProductQ9NZV8 (Uniprot-TrEMBL)
KCNH7GeneProductQ9NS40 (Uniprot-TrEMBL)
KCNMA1GeneProductQ12791 (Uniprot-TrEMBL)
KDM5AGeneProductP29375 (Uniprot-TrEMBL)
KLF10GeneProductQ13118 (Uniprot-TrEMBL)
KLF9GeneProductQ13886 (Uniprot-TrEMBL)
KMT2AGeneProductQ03164 (Uniprot-TrEMBL)
LEPGeneProductP41159 (Uniprot-TrEMBL)
LGR4GeneProductQ9BXB1 (Uniprot-TrEMBL)
MAGED1GeneProductQ9Y5V3 (Uniprot-TrEMBL)
MAGEL2GeneProductENSG00000254585 (Ensembl)
MAPK10GeneProductP53779 (Uniprot-TrEMBL)
MAPK8GeneProductP45983 (Uniprot-TrEMBL)
MAPK9GeneProductP45984 (Uniprot-TrEMBL)
MC3RGeneProductP41968 (Uniprot-TrEMBL)
METTL3GeneProductQ86U44 (Uniprot-TrEMBL)
MTA1GeneProductQ13330 (Uniprot-TrEMBL)
MTNR1AGeneProductP48039 (Uniprot-TrEMBL)
MTNR1BGeneProductP49286 (Uniprot-TrEMBL)
MTTPGeneProductE9PBP6 (Uniprot-TrEMBL)
MYBBP1AGeneProductQ9BQG0 (Uniprot-TrEMBL)
NAGLUGeneProductP54802 (Uniprot-TrEMBL)
NAMPTGeneProductP43490 (Uniprot-TrEMBL)
NCOA2GeneProductQ15596 (Uniprot-TrEMBL)
NCOR1GeneProductO75376 (Uniprot-TrEMBL)
NFIL3GeneProductQ16649 (Uniprot-TrEMBL)
NGFRGeneProductP08138 (Uniprot-TrEMBL)
NKX2-1GeneProductP43699 (Uniprot-TrEMBL)
NLGN1GeneProductQ8N2Q7 (Uniprot-TrEMBL)
NMSGeneProductQ5H8A3 (Uniprot-TrEMBL)
NOCTGeneProductQ9UK39 (Uniprot-TrEMBL)
NONOGeneProductQ15233 (Uniprot-TrEMBL)
NOS2GeneProductP35228 (Uniprot-TrEMBL)
NPAS2GeneProductQ99743 (Uniprot-TrEMBL)
NPSGeneProductP0C0P6 (Uniprot-TrEMBL)
NPY2RGeneProductP49146 (Uniprot-TrEMBL)
NR1D1GeneProductP20393 (Uniprot-TrEMBL)
NR1D2GeneProductQ14995 (Uniprot-TrEMBL)
NR1H3GeneProductQ13133 (Uniprot-TrEMBL)
NR2F6GeneProductP10588 (Uniprot-TrEMBL)
NRIP1GeneProductP48552 (Uniprot-TrEMBL)
NTRK1GeneProductP04629 (Uniprot-TrEMBL)
NTRK3GeneProductQ16288 (Uniprot-TrEMBL)
OGTGeneProductO15294 (Uniprot-TrEMBL)
OPN3GeneProductQ9H1Y3 (Uniprot-TrEMBL)
OPN4GeneProductQ9UHM6 (Uniprot-TrEMBL)
OPRL1GeneProductP41146 (Uniprot-TrEMBL)
PASD1GeneProductQ8IV76 (Uniprot-TrEMBL)
PAX4GeneProductO43316 (Uniprot-TrEMBL)
PER1GeneProductO15534 (Uniprot-TrEMBL)
PER2GeneProductO15055 (Uniprot-TrEMBL)
PER3GeneProductQ8TAR6 (Uniprot-TrEMBL)
PHLPP1GeneProductO60346 (Uniprot-TrEMBL)
PMLGeneProductP29590 (Uniprot-TrEMBL)
PPARAGeneProductQ07869 (Uniprot-TrEMBL)
PPARGC1AGeneProductQ9UBK2 (Uniprot-TrEMBL)
PPARGGeneProductP37231 (Uniprot-TrEMBL)
PPP1CAGeneProductP62136 (Uniprot-TrEMBL)
PPP1CBGeneProductP62140 (Uniprot-TrEMBL)
PPP1CCGeneProductP36873 (Uniprot-TrEMBL)
PRF1GeneProductP14222 (Uniprot-TrEMBL)
PRKAA1GeneProductQ13131 (Uniprot-TrEMBL)
PRKAA2GeneProductP54646 (Uniprot-TrEMBL)
PRKCDBPGeneProductQ969G5 (Uniprot-TrEMBL)
PRKCGGeneProductP05129 (Uniprot-TrEMBL)
PRKDCGeneProductP78527 (Uniprot-TrEMBL)
PRKG2GeneProductQ13237 (Uniprot-TrEMBL)
PRMT5GeneProductO14744 (Uniprot-TrEMBL)
PROK1GeneProductP58294 (Uniprot-TrEMBL)
PROK2GeneProductQ9HC23 (Uniprot-TrEMBL)
PROKR1GeneProductQ8TCW9 (Uniprot-TrEMBL)
PROKR2GeneProductQ8NFJ6 (Uniprot-TrEMBL)
PROX1GeneProductQ92786 (Uniprot-TrEMBL)
PSPC1GeneProductQ8WXF1 (Uniprot-TrEMBL)
PTENGeneProductP60484 (Uniprot-TrEMBL)
PTGDSGeneProductP41222 (Uniprot-TrEMBL)
Q59FM5GeneProductQ59FM5 (Uniprot-TrEMBL)
RAI1GeneProductQ7Z5J4 (Uniprot-TrEMBL)
RBM4BGeneProductQ9BQ04 (Uniprot-TrEMBL)
RBM4GeneProductQ9BWF3 (Uniprot-TrEMBL)
RELBGeneProductQ01201 (Uniprot-TrEMBL)
ROCK2GeneProductO75116 (Uniprot-TrEMBL)
RORAGeneProductP35398 (Uniprot-TrEMBL)
RORBGeneProductQ92753 (Uniprot-TrEMBL)
RORCGeneProductP51449 (Uniprot-TrEMBL)
RPS27AGeneProductP62979 (Uniprot-TrEMBL)
SERPINE1GeneProductP05121 (Uniprot-TrEMBL)
SETXGeneProductQ7Z333 (Uniprot-TrEMBL)
SFPQGeneProductP23246 (Uniprot-TrEMBL)
SFTPCGeneProductP11686 (Uniprot-TrEMBL)
SIK1GeneProductP57059 (Uniprot-TrEMBL)
SIN3AGeneProductQ96ST3 (Uniprot-TrEMBL)
SIRT1GeneProductQ96EB6 (Uniprot-TrEMBL)
SIX3GeneProductO95343 (Uniprot-TrEMBL)
SKP1GeneProductP63208 (Uniprot-TrEMBL)
SLC6A4GeneProductP31645 (Uniprot-TrEMBL)
SLC9A3GeneProductP48764 (Uniprot-TrEMBL)
SOX14GeneProductO95416 (Uniprot-TrEMBL)
SREBF1GeneProductP36956 (Uniprot-TrEMBL)
STARGeneProductP49675 (Uniprot-TrEMBL)
SUV39H1GeneProductO43463 (Uniprot-TrEMBL)
SUV39H2GeneProductQ9H5I1 (Uniprot-TrEMBL)
THGeneProductP07101 (Uniprot-TrEMBL)
THRAP3GeneProductQ9Y2W1 (Uniprot-TrEMBL)
TIMELESSGeneProductQ9UNS1 (Uniprot-TrEMBL)
TNFRSF11AGeneProductQ9Y6Q6 (Uniprot-TrEMBL)
TOP1GeneProductP11387 (Uniprot-TrEMBL)
TOP2AGeneProductP11388 (Uniprot-TrEMBL)
TP53GeneProductP04637 (Uniprot-TrEMBL)
TPH1GeneProductP17752 (Uniprot-TrEMBL)
TPH2GeneProductQ8IWU9 (Uniprot-TrEMBL)
TYMSGeneProductP04818 (Uniprot-TrEMBL)
UBA52GeneProductP62987 (Uniprot-TrEMBL)
UBCGeneProductP0CG48 (Uniprot-TrEMBL)
UBE3AGeneProductQ05086 (Uniprot-TrEMBL)
USP2GeneProductO75604 (Uniprot-TrEMBL)
UTS2GeneProductO95399 (Uniprot-TrEMBL)
UTS2RGeneProductQ9UKP6 (Uniprot-TrEMBL)
ZFHX3GeneProductQ15911 (Uniprot-TrEMBL)

Annotated Interactions

No annotated interactions

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