Help:WikiPathways RDF
From WikiPathways
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== SPARQL Endpoint == | == SPARQL Endpoint == | ||
| - | We provide [http://sparql.wikipathways.org/ an (experimental) SPARQL endpoint] where data queries can be done | + | We provide [http://sparql.wikipathways.org/ an (experimental) SPARQL endpoint] where data queries can be done. |
| - | == WikiPathways Example SPARQL Queries == | + | === WikiPathways Example SPARQL Queries === |
| - | http://wikipathways.org/index.php/Help:WikiPathways_Sparql_queries | + | You can find example queries [http://www.wikipathways.org/index.php/Help:WikiPathways_Sparql_queries here]. |
== Open PHACTS API == | == Open PHACTS API == | ||
The [http://www.openphacts.org/ Open PHACTS projects] provides an alternative to work with the WikiPathways RDF, as it is loaded in the data cache of Open PHACTS. The [https://dev.openphacts.org/docs Open PHACTS API] provides various queries, like "give me all targets in a pathway". It requires a [https://dev.openphacts.org/signup (free) account] to use this system. | The [http://www.openphacts.org/ Open PHACTS projects] provides an alternative to work with the WikiPathways RDF, as it is loaded in the data cache of Open PHACTS. The [https://dev.openphacts.org/docs Open PHACTS API] provides various queries, like "give me all targets in a pathway". It requires a [https://dev.openphacts.org/signup (free) account] to use this system. | ||
Revision as of 13:38, 28 August 2015
Two subsets of pathways from WikiPathways are now available in the RDF format: the Curated and the Reactome collections. For the curated collection a set of interactions is also available. Updates are currently not immediate. Meaning that if you add a new pathway or edit an existing one these updates will not be available in the RDF immediately. We do test builds of the RDF daily though. If you need an RDF update please contact us (on the mailing is best) and we can see what can be done.
The RDF was created using these vocabularies and database identifiers are given as identifiers.org URIs.
Contents |
Download RDF
You can download the WikiPathways RDF from here.
SPARQL Endpoint
We provide an (experimental) SPARQL endpoint where data queries can be done.
WikiPathways Example SPARQL Queries
You can find example queries here.
Open PHACTS API
The Open PHACTS projects provides an alternative to work with the WikiPathways RDF, as it is loaded in the data cache of Open PHACTS. The Open PHACTS API provides various queries, like "give me all targets in a pathway". It requires a (free) account to use this system.
