Circadian rhythm genes (Homo sapiens)

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Revision as of 21:11, 10 March 2025 by Khanspers (Talk | contribs)
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ArcPathVisio Brace Ellipse EndoplasmicReticulum GolgiApparatus HexagonPathVisio MimDegradation Mitochondria Octagon PentagonPathVisio Rectangle RoundedRectangle SarcoplasmicReticulum TriangleEquilateralEast TrianglePathVisio none neurotransmitter / receptor / functiontranscription factorcell proliferation /cell cycle regulationfood / appetite regulationcircadian rythm regulationepigeneticshormonesignalingbasic energy metabolismion channelimmune systemapoptosisrenal functionprotein degradationangiogenesisosteoporosistight junctionsDNA repairDNA / RNA handlingblood coagulationothersNPY2RJUNPAX4CRXNPSARNT2ADACIPCDRD3CIPCFASTHCIPCCIARTATOH7PRKG2PER1CLOCKCDK4DRD4SFTPCDRD1EGR1NCOA2TYMSHTR7ARNTL2ADIPOQLEPPER3SLC9A3CST3HDAC3SLC6A4CREB1NCOR1HOMER1PER2KLF10AHCYDBPDDX5SOX14NAGLUTPH1ADORA1NTRK3DDCID4MTTPKCNH7PRF1HCRTR2HS3ST2ATF5DBPMTA1NR1H3PRKAA1RBM4SREBF1GFPT1RORAKLF9DYRK1ACUL1HDAC1METTL3ADORA2AIL6STARHNF1BID3NPAS2SIX3NR2F6ARNTCHRNB2AGRPUTS2RJUNDCLDN4BTBD9SETXADCY1KCNMA1CREMDRD2NTRK1KCND2PRKAA2OPRL1PROX1TNFRSF11AMAGED1MC3RPTGDSOGTEZH2KDM5AHDAC2PPP1CCGNA11NKX2-1RORBCCAR2SKP1PROK2OPN3SUV39H2ATF4OPN4MAGEL2GHRLFBXL21F7TIMELESSUSP2NMSSFPQROCK2NR1D1NGFRCRHARNTLPSPC1NPAS2PPARGC1ATP53SIN3APRKDCBTRCTHRAP3FBXW11NOCTRAI1TOP2ATOP1CHRM1EP300PRKCDBPPRKCGSERPINE1ZFHX3NCOA2NONOPROKR1ADCY1SIRT1HCRTR1NFIL3AANATCARTPTCRY1HNRNPDGNAQSIK1GSK3BHCRTR2HCRTR1CSNK1ESUV39H1RELBHNRNPUQ59FM5FBXL3NLGN1MTNR1BUBA52RPS27APPP1CBPPP1CBPPP1CAGHRHAVPEGR3HEBP1PPARACRTC1NRIP1CSNK1DKMT2ANR1D2RBM4BMYBBP1AUBE3ACIPCPROKR2ID2PTENDHX9MTNR1ANOS2PHLPP1UTS2TPH2C1orf51CIPCMAPK9MAPK8RORCMAPK10UBCPPARGPASD1CRY2CPT1ALGR4PMLPROK1NAMPTAHRBHLHE41PRMT5BHLHE40HOMER1NRIP1PROKR2C1orf51AGRPPROKR1SIRT1PROK2BHLHE41PRKAA1Name: Circadian rhythm genesOrganism: Homo sapiens


Description

This is currently not a pathway but a list of circadian rhythm related genes and proteins. The source for this information is the gene ontology. The genes and proteins were filtered for "circadian rhythm" annotation (taxon = homo sapiens). According to supplementary information they were clustered in major (neurotransmitters, hormons, appetite regulation and immune system) and minor groups. Proteins on this pathway have targeted assays available via the [CPTAC Assay Portal](https://assays.cancer.gov/available_assays?wp_id=WP3594).

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Quality Tags

Image:NeedsRef.pngAdd references
Image:NonTypical.pngAnnotated lists
Image:Curated.pngApproved version

Ontology Terms

Pathway Ontology : regulatory pathway
 

Bibliography

No bibliography


History

View all...
CompareRevisionActionTimeUserComment
137974view21:11, 10 March 2025KhanspersModified description
117682view12:05, 22 May 2021EweitzModified title
108782view14:35, 29 January 2020DeSlReplaced A6NMV7 (unreviewed) with O43613 (reviewed) for HCRTR1 geneProduct
106357view21:39, 21 August 2019KhanspersModified description
105555view06:13, 9 August 2019KhanspersModified description
102861view14:37, 25 January 2019DdiglesModified title
87161view19:16, 18 July 2016MkutmonOntology Term : 'regulatory pathway' added !
84573view14:11, 3 March 2016Mkutmonadded missing graph ids
83945view09:07, 5 January 2016FehrhartModified description
83875view15:45, 18 December 2015FehrhartNew pathway

External references

DataNodes

View all...
Name  ↓Type  ↓Database reference  ↓Comment  ↓
AANATGeneProductQ16613 (Uniprot-TrEMBL)
ADAGeneProductP00813 (Uniprot-TrEMBL)
ADCY1GeneProductQ08828 (Uniprot-TrEMBL)
ADIPOQGeneProductQ15848 (Uniprot-TrEMBL)
ADORA1GeneProductP30542 (Uniprot-TrEMBL)
ADORA2AGeneProductP29274 (Uniprot-TrEMBL)
AGRPGeneProductO00253 (Uniprot-TrEMBL)
AHCYGeneProductP23526 (Uniprot-TrEMBL)
AHRGeneProductP35869 (Uniprot-TrEMBL)
ARNT2GeneProductQ9HBZ2 (Uniprot-TrEMBL)
ARNTL2GeneProductQ8WYA1 (Uniprot-TrEMBL)
ARNTLGeneProductO00327 (Uniprot-TrEMBL)
ARNTGeneProductP27540 (Uniprot-TrEMBL)
ATF4GeneProductP18848 (Uniprot-TrEMBL)
ATF5GeneProductQ9Y2D1 (Uniprot-TrEMBL)
ATOH7GeneProductQ8N100 (Uniprot-TrEMBL)
AVPGeneProductP01185 (Uniprot-TrEMBL)
BHLHE40GeneProductO14503 (Uniprot-TrEMBL)
BHLHE41GeneProductQ9C0J9 (Uniprot-TrEMBL)
BTBD9GeneProductQ96Q07 (Uniprot-TrEMBL)
BTRCGeneProductQ9Y297 (Uniprot-TrEMBL)
C1orf51GeneProductQ5TB13 (Uniprot-TrEMBL)
CARTPTGeneProductQ16568 (Uniprot-TrEMBL)
CCAR2GeneProductQ8N163 (Uniprot-TrEMBL)
CDK4GeneProductP11802 (Uniprot-TrEMBL)
CHRM1GeneProductP11229 (Uniprot-TrEMBL)
CHRNB2GeneProductP17787 (Uniprot-TrEMBL)
CIARTGeneProductQ8N365 (Uniprot-TrEMBL)
CIPCGeneProductG3V3Y7 (Uniprot-TrEMBL)
CIPCGeneProductG3V405 (Uniprot-TrEMBL)
CIPCGeneProductG3V5J4 (Uniprot-TrEMBL)
CIPCGeneProductG3V5Y7 (Uniprot-TrEMBL)
CIPCGeneProductQ9C0C6 (Uniprot-TrEMBL)
CLDN4GeneProductO14493 (Uniprot-TrEMBL)
CLOCKGeneProductO15516 (Uniprot-TrEMBL)
CPT1AGeneProductP50416 (Uniprot-TrEMBL)
CREB1GeneProductP16220 (Uniprot-TrEMBL)
CREMGeneProductQ03060 (Uniprot-TrEMBL)
CRHGeneProductP06850 (Uniprot-TrEMBL)
CRTC1GeneProductQ6UUV9 (Uniprot-TrEMBL)
CRXGeneProductO43186 (Uniprot-TrEMBL)
CRY1GeneProductQ16526 (Uniprot-TrEMBL)
CRY2GeneProductQ49AN0 (Uniprot-TrEMBL)
CSNK1DGeneProductP48730 (Uniprot-TrEMBL)
CSNK1EGeneProductP49674 (Uniprot-TrEMBL)
CST3GeneProductP01034 (Uniprot-TrEMBL)
CUL1GeneProductQ13616 (Uniprot-TrEMBL)
DBPGeneProductM0QXP1 (Uniprot-TrEMBL)
DBPGeneProductQ10586 (Uniprot-TrEMBL)
DDCGeneProductP20711 (Uniprot-TrEMBL)
DDX5GeneProductP17844 (Uniprot-TrEMBL)
DHX9GeneProductQ08211 (Uniprot-TrEMBL)
DRD1GeneProductP21728 (Uniprot-TrEMBL)
DRD2GeneProductP14416 (Uniprot-TrEMBL)
DRD3GeneProductP35462 (Uniprot-TrEMBL)
DRD4GeneProductP21917 (Uniprot-TrEMBL)
DYRK1AGeneProductQ13627 (Uniprot-TrEMBL)
EGR1GeneProductP18146 (Uniprot-TrEMBL)
EGR3GeneProductQ06889 (Uniprot-TrEMBL)
EP300GeneProductQ09472 (Uniprot-TrEMBL)
EZH2GeneProductQ15910 (Uniprot-TrEMBL)
F7GeneProductP08709 (Uniprot-TrEMBL)
FASGeneProductP25445 (Uniprot-TrEMBL)
FBXL21GeneProductENSG00000164616 (Ensembl)
FBXL3GeneProductQ9UKT7 (Uniprot-TrEMBL)
FBXW11GeneProductQ9UKB1 (Uniprot-TrEMBL)
GFPT1GeneProductQ06210 (Uniprot-TrEMBL)
GHRHGeneProductP01286 (Uniprot-TrEMBL)
GHRLGeneProductQ9UBU3 (Uniprot-TrEMBL)
GNA11GeneProductP29992 (Uniprot-TrEMBL)
GNAQGeneProductENSG00000156052 (Ensembl)
GSK3BGeneProductP49841 (Uniprot-TrEMBL)
HCRTR1GeneProductO43613 (Uniprot-TrEMBL)
HCRTR2GeneProductO43614 (Uniprot-TrEMBL)
HDAC1GeneProductQ13547 (Uniprot-TrEMBL)
HDAC2GeneProductQ92769 (Uniprot-TrEMBL)
HDAC3GeneProductO15379 (Uniprot-TrEMBL)
HEBP1GeneProductQ9NRV9 (Uniprot-TrEMBL)
HNF1BGeneProductP35680 (Uniprot-TrEMBL)
HNRNPDGeneProductQ14103 (Uniprot-TrEMBL)
HNRNPUGeneProductQ00839 (Uniprot-TrEMBL)
HOMER1GeneProductQ86YM7 (Uniprot-TrEMBL)
HS3ST2GeneProductQ9Y278 (Uniprot-TrEMBL)
HTR7GeneProductP34969 (Uniprot-TrEMBL)
ID2GeneProductQ02363 (Uniprot-TrEMBL)
ID3GeneProductQ02535 (Uniprot-TrEMBL)
ID4GeneProductP47928 (Uniprot-TrEMBL)
IL6GeneProductP05231 (Uniprot-TrEMBL)
JUNDGeneProductP17535 (Uniprot-TrEMBL)
JUNGeneProductP05412 (Uniprot-TrEMBL)
KCND2GeneProductQ9NZV8 (Uniprot-TrEMBL)
KCNH7GeneProductQ9NS40 (Uniprot-TrEMBL)
KCNMA1GeneProductQ12791 (Uniprot-TrEMBL)
KDM5AGeneProductP29375 (Uniprot-TrEMBL)
KLF10GeneProductQ13118 (Uniprot-TrEMBL)
KLF9GeneProductQ13886 (Uniprot-TrEMBL)
KMT2AGeneProductQ03164 (Uniprot-TrEMBL)
LEPGeneProductP41159 (Uniprot-TrEMBL)
LGR4GeneProductQ9BXB1 (Uniprot-TrEMBL)
MAGED1GeneProductQ9Y5V3 (Uniprot-TrEMBL)
MAGEL2GeneProductENSG00000254585 (Ensembl)
MAPK10GeneProductP53779 (Uniprot-TrEMBL)
MAPK8GeneProductP45983 (Uniprot-TrEMBL)
MAPK9GeneProductP45984 (Uniprot-TrEMBL)
MC3RGeneProductP41968 (Uniprot-TrEMBL)
METTL3GeneProductQ86U44 (Uniprot-TrEMBL)
MTA1GeneProductQ13330 (Uniprot-TrEMBL)
MTNR1AGeneProductP48039 (Uniprot-TrEMBL)
MTNR1BGeneProductP49286 (Uniprot-TrEMBL)
MTTPGeneProductE9PBP6 (Uniprot-TrEMBL)
MYBBP1AGeneProductQ9BQG0 (Uniprot-TrEMBL)
NAGLUGeneProductP54802 (Uniprot-TrEMBL)
NAMPTGeneProductP43490 (Uniprot-TrEMBL)
NCOA2GeneProductQ15596 (Uniprot-TrEMBL)
NCOR1GeneProductO75376 (Uniprot-TrEMBL)
NFIL3GeneProductQ16649 (Uniprot-TrEMBL)
NGFRGeneProductP08138 (Uniprot-TrEMBL)
NKX2-1GeneProductP43699 (Uniprot-TrEMBL)
NLGN1GeneProductQ8N2Q7 (Uniprot-TrEMBL)
NMSGeneProductQ5H8A3 (Uniprot-TrEMBL)
NOCTGeneProductQ9UK39 (Uniprot-TrEMBL)
NONOGeneProductQ15233 (Uniprot-TrEMBL)
NOS2GeneProductP35228 (Uniprot-TrEMBL)
NPAS2GeneProductQ99743 (Uniprot-TrEMBL)
NPSGeneProductP0C0P6 (Uniprot-TrEMBL)
NPY2RGeneProductP49146 (Uniprot-TrEMBL)
NR1D1GeneProductP20393 (Uniprot-TrEMBL)
NR1D2GeneProductQ14995 (Uniprot-TrEMBL)
NR1H3GeneProductQ13133 (Uniprot-TrEMBL)
NR2F6GeneProductP10588 (Uniprot-TrEMBL)
NRIP1GeneProductP48552 (Uniprot-TrEMBL)
NTRK1GeneProductP04629 (Uniprot-TrEMBL)
NTRK3GeneProductQ16288 (Uniprot-TrEMBL)
OGTGeneProductO15294 (Uniprot-TrEMBL)
OPN3GeneProductQ9H1Y3 (Uniprot-TrEMBL)
OPN4GeneProductQ9UHM6 (Uniprot-TrEMBL)
OPRL1GeneProductP41146 (Uniprot-TrEMBL)
PASD1GeneProductQ8IV76 (Uniprot-TrEMBL)
PAX4GeneProductO43316 (Uniprot-TrEMBL)
PER1GeneProductO15534 (Uniprot-TrEMBL)
PER2GeneProductO15055 (Uniprot-TrEMBL)
PER3GeneProductQ8TAR6 (Uniprot-TrEMBL)
PHLPP1GeneProductO60346 (Uniprot-TrEMBL)
PMLGeneProductP29590 (Uniprot-TrEMBL)
PPARAGeneProductQ07869 (Uniprot-TrEMBL)
PPARGC1AGeneProductQ9UBK2 (Uniprot-TrEMBL)
PPARGGeneProductP37231 (Uniprot-TrEMBL)
PPP1CAGeneProductP62136 (Uniprot-TrEMBL)
PPP1CBGeneProductP62140 (Uniprot-TrEMBL)
PPP1CCGeneProductP36873 (Uniprot-TrEMBL)
PRF1GeneProductP14222 (Uniprot-TrEMBL)
PRKAA1GeneProductQ13131 (Uniprot-TrEMBL)
PRKAA2GeneProductP54646 (Uniprot-TrEMBL)
PRKCDBPGeneProductQ969G5 (Uniprot-TrEMBL)
PRKCGGeneProductP05129 (Uniprot-TrEMBL)
PRKDCGeneProductP78527 (Uniprot-TrEMBL)
PRKG2GeneProductQ13237 (Uniprot-TrEMBL)
PRMT5GeneProductO14744 (Uniprot-TrEMBL)
PROK1GeneProductP58294 (Uniprot-TrEMBL)
PROK2GeneProductQ9HC23 (Uniprot-TrEMBL)
PROKR1GeneProductQ8TCW9 (Uniprot-TrEMBL)
PROKR2GeneProductQ8NFJ6 (Uniprot-TrEMBL)
PROX1GeneProductQ92786 (Uniprot-TrEMBL)
PSPC1GeneProductQ8WXF1 (Uniprot-TrEMBL)
PTENGeneProductP60484 (Uniprot-TrEMBL)
PTGDSGeneProductP41222 (Uniprot-TrEMBL)
Q59FM5GeneProductQ59FM5 (Uniprot-TrEMBL)
RAI1GeneProductQ7Z5J4 (Uniprot-TrEMBL)
RBM4BGeneProductQ9BQ04 (Uniprot-TrEMBL)
RBM4GeneProductQ9BWF3 (Uniprot-TrEMBL)
RELBGeneProductQ01201 (Uniprot-TrEMBL)
ROCK2GeneProductO75116 (Uniprot-TrEMBL)
RORAGeneProductP35398 (Uniprot-TrEMBL)
RORBGeneProductQ92753 (Uniprot-TrEMBL)
RORCGeneProductP51449 (Uniprot-TrEMBL)
RPS27AGeneProductP62979 (Uniprot-TrEMBL)
SERPINE1GeneProductP05121 (Uniprot-TrEMBL)
SETXGeneProductQ7Z333 (Uniprot-TrEMBL)
SFPQGeneProductP23246 (Uniprot-TrEMBL)
SFTPCGeneProductP11686 (Uniprot-TrEMBL)
SIK1GeneProductP57059 (Uniprot-TrEMBL)
SIN3AGeneProductQ96ST3 (Uniprot-TrEMBL)
SIRT1GeneProductQ96EB6 (Uniprot-TrEMBL)
SIX3GeneProductO95343 (Uniprot-TrEMBL)
SKP1GeneProductP63208 (Uniprot-TrEMBL)
SLC6A4GeneProductP31645 (Uniprot-TrEMBL)
SLC9A3GeneProductP48764 (Uniprot-TrEMBL)
SOX14GeneProductO95416 (Uniprot-TrEMBL)
SREBF1GeneProductP36956 (Uniprot-TrEMBL)
STARGeneProductP49675 (Uniprot-TrEMBL)
SUV39H1GeneProductO43463 (Uniprot-TrEMBL)
SUV39H2GeneProductQ9H5I1 (Uniprot-TrEMBL)
THGeneProductP07101 (Uniprot-TrEMBL)
THRAP3GeneProductQ9Y2W1 (Uniprot-TrEMBL)
TIMELESSGeneProductQ9UNS1 (Uniprot-TrEMBL)
TNFRSF11AGeneProductQ9Y6Q6 (Uniprot-TrEMBL)
TOP1GeneProductP11387 (Uniprot-TrEMBL)
TOP2AGeneProductP11388 (Uniprot-TrEMBL)
TP53GeneProductP04637 (Uniprot-TrEMBL)
TPH1GeneProductP17752 (Uniprot-TrEMBL)
TPH2GeneProductQ8IWU9 (Uniprot-TrEMBL)
TYMSGeneProductP04818 (Uniprot-TrEMBL)
UBA52GeneProductP62987 (Uniprot-TrEMBL)
UBCGeneProductP0CG48 (Uniprot-TrEMBL)
UBE3AGeneProductQ05086 (Uniprot-TrEMBL)
USP2GeneProductO75604 (Uniprot-TrEMBL)
UTS2GeneProductO95399 (Uniprot-TrEMBL)
UTS2RGeneProductQ9UKP6 (Uniprot-TrEMBL)
ZFHX3GeneProductQ15911 (Uniprot-TrEMBL)

Annotated Interactions

No annotated interactions

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