Nucleotide excision repair (Homo sapiens)

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ArcPathVisio Brace Ellipse EndoplasmicReticulum GolgiApparatus HexagonPathVisio MimDegradation Mitochondria Octagon PentagonPathVisio Rectangle RoundedRectangle SarcoplasmicReticulum TriangleEquilateralEast TrianglePathVisio none Stalled polymeraseDamage recognitionTranscription-coupled repairTranscription factor II HGTF2H5GTF2H4CDK7MNAT1CCNHERCC2ERCC3GTF2H1GTF2H2GTF2H3Cul4-CSA complexERCC6RBX1CUL4ACUL4BERCC8DDB1XPC complexXPCRAD23ARAD23BCETN2POLD1POLD2POLD3POLD45'5'3'3'5'5'3'3'Pol IIDNA unwinding5'5'3'3'ERCC5XPARPA1RPA2RPA35'5'3'3'ERCC1ERCC4Incision5'5'3'3'Excision and DNA synthesisPOLEPOLE2POLE3POLE4PCNARFC1RFC2RFC3RFC4RFC55'5'3'3'LIG1LigationGlobal genome repairCul4-DDB complexRBX1CUL4ACUL4BDDB2DDB15'5'3'3'Name: Nucleotide excision repairOrganism: Homo sapiens


Description

Nucleotide excision repair is a DNA repair mechanism that repairs DNA damaged by UV radiation.

This type of damage produces bulky distortions in the shape of DNA double helix due to the addition of DNA adducts, mostly thymine dimers and 6,4-photoproducts.

Recognition of distortions leads to the removal of a short single-stranded DNA segment that includes the lesion, creating a single-strand gap in the DNA, which is subsequently filled in by DNA polymerase, which uses the undamaged strand as a template. NER can be divided into two subpathways (Global genomic NER and Transcription coupled NER) that differ only in their recognition of helix-distorting DNA damage. Nucleotide excision repair has more complexity in eukaryotes.

Nucleotide excision repair (NER) is a particularly important DNA repair mechanism as evidenced by the severe human diseases that result from in-born genetic mutations of NER proteins including Xeroderma pigmentosum and Cockayne's syndrome.

This pathway was adapted from [KEGG](https://www.genome.jp/dbget-bin/www_bget?pathway+hsa03420), [REPAIRtoire](http://repairtoire.genesilico.pl/Pathway/2/) and [Wikipedia](https://en.wikipedia.org/wiki/Nucleotide_excision_repair). The pathway layout is based on KEGG.

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Quality Tags

Image:Curated.pngApproved version
Image:Wplogo_31.pngCommunity: CPTAC

Ontology Terms

 

Bibliography

  1. ''KEGG''; https://www.genome.jp/dbget-bin/www_bget?pathway+hsa03420,
  2. ''Nucleotide excision repair''; REPAIRtoire,

History

View all...
CompareRevisionActionTimeUserComment
136568
Approved
view21:30, 11 February 2025KhanspersModified description
136383
CPTAC
view01:33, 1 February 2025Khanspersupdated reference
136382view01:32, 1 February 2025Khanspersupdated reference
136371view19:34, 31 January 2025KhanspersModified description
136370view19:33, 31 January 2025Khanspersupdated reference
127651view23:17, 13 November 2023Khanspersadded id and db for repairtoire lit ref
125306view17:48, 31 January 2023LarsgwFix reference
119238view19:08, 22 June 2021Finterlyadded KEGG pathway info to publicationXref
117809view14:42, 22 May 2021EweitzModified title
108596view23:47, 9 January 2020KhanspersModified description
108048view00:38, 27 November 2019Khanspersadded references
108047view00:36, 27 November 2019KhanspersModified description
108046view00:27, 27 November 2019KhanspersModified description
108044view20:22, 26 November 2019KhanspersOntology Term : 'DNA repair pathway' added !
108043view20:21, 26 November 2019KhanspersOntology Term : 'nucleotide excision repair pathway' added !
108041view20:00, 26 November 2019KhanspersNew pathway

External references

DataNodes

View all...
Name  ↓Type  ↓Database reference  ↓Comment  ↓
CCNHGeneProductENSG00000134480 (Ensembl)
CDK7GeneProductENSG00000134058 (Ensembl)
CETN2GeneProductENSG00000147400 (Ensembl)
CUL4AGeneProductENSG00000139842 (Ensembl)
CUL4BGeneProductENSG00000158290 (Ensembl)
DDB1GeneProductENSG00000167986 (Ensembl)
DDB2GeneProductENSG00000134574 (Ensembl)
ERCC1GeneProductENSG00000012061 (Ensembl)
ERCC2GeneProductENSG00000104884 (Ensembl)
ERCC3GeneProductENSG00000163161 (Ensembl)
ERCC4GeneProductENSG00000175595 (Ensembl)
ERCC5GeneProductENSG00000134899 (Ensembl)
ERCC6GeneProductENSG00000225830 (Ensembl)
ERCC8GeneProductENSG00000049167 (Ensembl)
GTF2H1GeneProductENSG00000110768 (Ensembl)
GTF2H2GeneProductENSG00000145736 (Ensembl)
GTF2H3GeneProductENSG00000111358 (Ensembl)
GTF2H4GeneProductENSG00000213780 (Ensembl)
GTF2H5GeneProductENSG00000272047 (Ensembl)
LIG1GeneProductENSG00000105486 (Ensembl)
MNAT1GeneProductENSG00000020426 (Ensembl)
PCNAGeneProductENSG00000132646 (Ensembl)
POLD1GeneProductENSG00000062822 (Ensembl)
POLD2GeneProductENSG00000106628 (Ensembl)
POLD3GeneProductENSG00000077514 (Ensembl)
POLD4GeneProductENSG00000175482 (Ensembl)
POLE2GeneProductENSG00000100479 (Ensembl)
POLE3GeneProductENSG00000148229 (Ensembl)
POLE4GeneProductENSG00000115350 (Ensembl)
POLEGeneProductENSG00000177084 (Ensembl)
RAD23AGeneProductENSG00000179262 (Ensembl)
RAD23BGeneProductENSG00000119318 (Ensembl)
RBX1GeneProductENSG00000100387 (Ensembl)
RFC1GeneProductENSG00000035928 (Ensembl)
RFC2GeneProductENSG00000049541 (Ensembl)
RFC3GeneProductENSG00000133119 (Ensembl)
RFC4GeneProductENSG00000163918 (Ensembl)
RFC5GeneProductENSG00000111445 (Ensembl)
RPA1GeneProductENSG00000132383 (Ensembl)
RPA2GeneProductENSG00000117748 (Ensembl)
RPA3GeneProductENSG00000106399 (Ensembl)
XPAGeneProductENSG00000136936 (Ensembl)
XPCGeneProductENSG00000154767 (Ensembl)

Annotated Interactions

No annotated interactions

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