Nucleotide excision repair (Homo sapiens)

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1, 2Stalled polymeraseTranscription-coupled repairTranscription factor II HXPC complexCul4-CSA complexDamage recognitionERCC6GTF2H5POLD1GTF2H45'5'3'3'5'5'3'3'Pol IIRBX1CUL4ACUL4BERCC8DDB1DNA unwinding5'5'3'3'ERCC5XPARPA1CDK7MNAT1CCNHERCC2ERCC3GTF2H1GTF2H2GTF2H35'5'3'3'ERCC1ERCC4Incision5'5'3'3'Excision and DNA synthesisPOLD2POLD3POLD4POLEPOLE2POLE3POLE4PCNARFC1RFC2RFC3RFC4RFC55'5'3'3'LIG1LigationGlobal genome repairCul4-DDB complexRBX1CUL4ACUL4BDDB2DDB1XPCRAD23ARAD23BCETN25'5'3'3'RPA2RPA3


Description

Nucleotide excision repair is a DNA repair mechanism that repairs DNA damaged by UV radiation.

This type of damage produces bulky distortions in the shape of DNA double helix due to the addition of DNA adducts, mostly thymine dimers and 6,4-photoproducts.

Recognition of distortions leads to the removal of a short single-stranded DNA segment that includes the lesion, creating a single-strand gap in the DNA, which is subsequently filled in by DNA polymerase, which uses the undamaged strand as a template. NER can be divided into two subpathways (Global genomic NER and Transcription coupled NER) that differ only in their recognition of helix-distorting DNA damage. Nucleotide excision repair has more complexity in eukaryotes.

Nucleotide excision repair (NER) is a particularly important DNA repair mechanism as evidenced by the severe human diseases that result from in-born genetic mutations of NER proteins including Xeroderma pigmentosum and Cockayne's syndrome.

This pathway was adapted from KEGG, REPAIRtoire and Wikipedia. The pathway layout is based on KEGG.

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Quality Tags

Ontology Terms

 

Bibliography

  1. ''KEGG''; https://www.genome.jp/dbget-bin/www_bget?pathway+hsa03420,
  2. ''REPAIRtoire''; http://repairtoire.genesilico.pl/Pathway/2/,

History

View all...
CompareRevisionActionTimeUserComment
127651view23:17, 13 November 2023Khanspersadded id and db for repairtoire lit ref
125306view17:48, 31 January 2023LarsgwFix reference
119238view19:08, 22 June 2021Finterlyadded KEGG pathway info to publicationXref
117809view14:42, 22 May 2021EweitzModified title
108596view23:47, 9 January 2020KhanspersModified description
108048view00:38, 27 November 2019Khanspersadded references
108047view00:36, 27 November 2019KhanspersModified description
108046view00:27, 27 November 2019KhanspersModified description
108044view20:22, 26 November 2019KhanspersOntology Term : 'DNA repair pathway' added !
108043view20:21, 26 November 2019KhanspersOntology Term : 'nucleotide excision repair pathway' added !
108041view20:00, 26 November 2019KhanspersNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
CCNHGeneProductENSG00000134480 (Ensembl)
CDK7GeneProductENSG00000134058 (Ensembl)
CETN2GeneProductENSG00000147400 (Ensembl)
CUL4AGeneProductENSG00000139842 (Ensembl)
CUL4BGeneProductENSG00000158290 (Ensembl)
DDB1GeneProductENSG00000167986 (Ensembl)
DDB2GeneProductENSG00000134574 (Ensembl)
ERCC1GeneProductENSG00000012061 (Ensembl)
ERCC2GeneProductENSG00000104884 (Ensembl)
ERCC3GeneProductENSG00000163161 (Ensembl)
ERCC4GeneProductENSG00000175595 (Ensembl)
ERCC5GeneProductENSG00000134899 (Ensembl)
ERCC6GeneProductENSG00000225830 (Ensembl)
ERCC8GeneProductENSG00000049167 (Ensembl)
GTF2H1GeneProductENSG00000110768 (Ensembl)
GTF2H2GeneProductENSG00000145736 (Ensembl)
GTF2H3GeneProductENSG00000111358 (Ensembl)
GTF2H4GeneProductENSG00000213780 (Ensembl)
GTF2H5GeneProductENSG00000272047 (Ensembl)
LIG1GeneProductENSG00000105486 (Ensembl)
MNAT1GeneProductENSG00000020426 (Ensembl)
PCNAGeneProductENSG00000132646 (Ensembl)
POLD1GeneProductENSG00000062822 (Ensembl)
POLD2GeneProductENSG00000106628 (Ensembl)
POLD3GeneProductENSG00000077514 (Ensembl)
POLD4GeneProductENSG00000175482 (Ensembl)
POLE2GeneProductENSG00000100479 (Ensembl)
POLE3GeneProductENSG00000148229 (Ensembl)
POLE4GeneProductENSG00000115350 (Ensembl)
POLEGeneProductENSG00000177084 (Ensembl)
RAD23AGeneProductENSG00000179262 (Ensembl)
RAD23BGeneProductENSG00000119318 (Ensembl)
RBX1GeneProductENSG00000100387 (Ensembl)
RFC1GeneProductENSG00000035928 (Ensembl)
RFC2GeneProductENSG00000049541 (Ensembl)
RFC3GeneProductENSG00000133119 (Ensembl)
RFC4GeneProductENSG00000163918 (Ensembl)
RFC5GeneProductENSG00000111445 (Ensembl)
RPA1GeneProductENSG00000132383 (Ensembl)
RPA2GeneProductENSG00000117748 (Ensembl)
RPA3GeneProductENSG00000106399 (Ensembl)
XPAGeneProductENSG00000136936 (Ensembl)
XPCGeneProductENSG00000154767 (Ensembl)

Annotated Interactions

No annotated interactions

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