Gibberellin biosynthesis II (early C-3 hydroxylation) (Arabidopsis thaliana)

From WikiPathways

You do not have permission to edit pages, for the following reasons:

• You do not have permission to edit pages in the Pathway namespace.
• You are not allowed to execute the action you have requested.

You can view and copy the source of this page:

<?xml version="1.0" encoding="UTF-8"?> <Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="gibberellin biosynthesis II (early C-3 hydroxylation)" Data-Source="Reactome - http://www.reactome.org" Version="48" Organism="Arabidopsis thaliana"> <Comment Source="WikiPathways-description">This event has been computationally inferred from an event that has been demonstrated in another species.&lt;p&gt;The inference is based on Ensembl Compara orthology projection. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped ortholog or paralog are inferred to the other species. High-level events are also inferred for these events to allow for easier navigation.&lt;p&gt;Details of projection methods and parameters may be found &lt;a href="/projection.html"&gt;here.&lt;/a&gt;&lt;p&gt;Original Pathway at Reactome: http://www.reactome.org/PathwayBrowser/#DB=gk_current&amp;FOCUS_SPECIES_ID=48887&amp;FOCUS_PATHWAY_ID=5402116</Comment> <Attribute Key="reactome_id" Value="5402116" /> <Graphics BoardWidth="731.0" BoardHeight="776.0" /> <DataNode TextLabel="2OG" GraphId="c5150" Type="Metabolite"> <Attribute Key="reactome_id" Value="29406" /> <Graphics CenterX="146.0" CenterY="209.0" Width="42.0" Height="30.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:30915" /> </DataNode> <DataNode TextLabel="SUCCA" GraphId="a1133" Type="Metabolite"> <Attribute Key="reactome_id" Value="29434" /> <Graphics CenterX="278.0" CenterY="491.5" Width="60.0" Height="29.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:15741" /> </DataNode> <DataNode TextLabel="O2" GraphId="c2dab" Type="Metabolite"> <Attribute Key="reactome_id" Value="29368" /> <Graphics CenterX="262.0" CenterY="205.0" Width="42.0" Height="30.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:15379" /> </DataNode> <DataNode TextLabel="2OG" GraphId="ea9ae" Type="Metabolite"> <Attribute Key="reactome_id" Value="29406" /> <Graphics CenterX="298.5" CenterY="576.5" Width="49.0" Height="31.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:30915" /> </DataNode> <DataNode TextLabel="CO2" GraphId="b05bb" Type="Metabolite"> <Attribute Key="reactome_id" Value="113528" /> <Graphics CenterX="125.5" CenterY="307.5" Width="43.0" Height="33.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:16526" /> </DataNode> <DataNode TextLabel="2OG" GraphId="dab73" Type="Metabolite"> <Attribute Key="reactome_id" Value="29406" /> <Graphics CenterX="417.5" CenterY="395.0" Width="61.0" Height="28.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:30915" /> </DataNode> <DataNode TextLabel="O2" GraphId="b504b" Type="Metabolite"> <Attribute Key="reactome_id" Value="29368" /> <Graphics CenterX="420.5" CenterY="578.0" Width="45.0" Height="28.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:15379" /> </DataNode> <DataNode TextLabel="GA4" GraphId="ce29c" Type="Metabolite"> <Attribute Key="reactome_id" Value="1130812" /> <Graphics CenterX="365.5" CenterY="704.5" Width="45.0" Height="31.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:32902" /> </DataNode> <DataNode TextLabel="GA14" GraphId="f6fc8" Type="Metabolite"> <Attribute Key="reactome_id" Value="1130934" /> <Graphics CenterX="200.0" CenterY="184.5" Width="54.0" Height="27.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:29588" /> </DataNode> <DataNode TextLabel="GA37" GraphId="be01b" Type="Metabolite"> <Attribute Key="reactome_id" Value="1130960" /> <Graphics CenterX="362.5" CenterY="367.5" Width="53.0" Height="31.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:29596" /> </DataNode> <DataNode TextLabel="GA36" GraphId="b3d92" Type="Metabolite"> <Attribute Key="reactome_id" Value="1132169" /> <Graphics CenterX="362.5" CenterY="540.0" Width="51.0" Height="36.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:29595" /> </DataNode> <DataNode TextLabel="gibberellin&#xA;20-oxidase" GraphId="d0199" Type="Protein"> <Attribute Key="reactome_id" Value="5398336" /> <Graphics CenterX="79.5" CenterY="459.0" Width="109.0" Height="36.0" ZOrder="32768" FontSize="10" Valign="Middle" /> <Xref Database="Reactome" ID="5398336" /> </DataNode> <DataNode TextLabel="CO2" GraphId="e898b" Type="Metabolite"> <Attribute Key="reactome_id" Value="113528" /> <Graphics CenterX="284.0" CenterY="530.5" Width="44.0" Height="33.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:16526" /> </DataNode> <DataNode TextLabel="O2" GraphId="c2715" Type="Metabolite"> <Attribute Key="reactome_id" Value="29368" /> <Graphics CenterX="307.5" CenterY="397.5" Width="41.0" Height="35.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:15379" /> </DataNode> <DataNode TextLabel="H2O" GraphId="dbe8d" Type="Metabolite"> <Attribute Key="reactome_id" Value="29356" /> <Graphics CenterX="433.5" CenterY="523.0" Width="51.0" Height="32.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:15377" /> </DataNode> <DataNode TextLabel="SUCCA" GraphId="de5d9" Type="Metabolite"> <Attribute Key="reactome_id" Value="29434" /> <Graphics CenterX="429.5" CenterY="687.0" Width="59.0" Height="32.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:15741" /> </DataNode> <DataNode TextLabel="CO2" GraphId="e09bd" Type="Metabolite"> <Attribute Key="reactome_id" Value="113528" /> <Graphics CenterX="294.0" CenterY="683.5" Width="50.0" Height="31.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:16526" /> </DataNode> <DataNode TextLabel="SUCCA" GraphId="b180b" Type="Metabolite"> <Attribute Key="reactome_id" Value="29434" /> <Graphics CenterX="143.5" CenterY="355.0" Width="51.0" Height="34.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="0000ff" /> <Xref Database="ChEBI" ID="CHEBI:15741" /> </DataNode> <Interaction GraphId="bf238"> <Comment Source="Reactome">This event has been computationally inferred from an event that has been demonstrated in another species.&lt;p&gt;The inference is based on Ensembl Compara orthology projection. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped ortholog or paralog are inferred to the other species. High-level events are also inferred for these events to allow for easier navigation.&lt;p&gt;Details of projection methods and parameters may be found &lt;a href="/projection.html"&gt;here.&lt;/a&gt;&lt;p&gt;</Comment> <Attribute Key="reactome_id" Value="5398793" /> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="363.0" Y="595.0" /> <Point X="363.0" Y="661.0" /> <Anchor Position="0.0" Shape="None" GraphId="b6dcf" /> <Anchor Position="0.99" Shape="None" GraphId="f4839" /> <Anchor Position="0.5" Shape="None" GraphId="f75b4" /> </Graphics> <Xref Database="Reactome" ID="5398793" /> </Interaction> <Interaction GraphId="c3624"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="362.0" Y="558.0" GraphRef="b3d92" RelX="-0.0196078431372549" RelY="1.0" /> <Point X="363.0" Y="595.0" GraphRef="b6dcf" RelX="0.0" RelY="0.0" /> </Graphics> <Xref Database="Reactome" ID="5398793" /> </Interaction> <Interaction GraphId="cc1eb"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="322.0" Y="576.0" GraphRef="ea9ae" RelX="0.9591836734693877" RelY="-0.03225806451612903" /> <Point X="363.0" Y="595.0" GraphRef="b6dcf" RelX="0.0" RelY="0.0" /> </Graphics> <Xref Database="Reactome" ID="5398793" /> </Interaction> <Interaction GraphId="ac2e4"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="398.0" Y="578.0" GraphRef="b504b" RelX="-1.0" RelY="0.0" /> <Point X="363.0" Y="595.0" GraphRef="b6dcf" RelX="0.0" RelY="0.0" /> </Graphics> <Xref Database="Reactome" ID="5398793" /> </Interaction> <Interaction GraphId="daa5c"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="363.0" Y="661.0" GraphRef="f4839" RelX="0.0" RelY="0.6599999999999682" /> <Point X="365.0" Y="689.0" GraphRef="ce29c" RelX="-0.022222222222222223" RelY="-1.0" ArrowHead="Arrow" /> </Graphics> <Xref Database="Reactome" ID="5398793" /> </Interaction> <Interaction GraphId="c1a6e"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="363.0" Y="661.0" GraphRef="f4839" RelX="0.0" RelY="0.6599999999999682" /> <Point X="319.0" Y="683.0" GraphRef="e09bd" RelX="1.0" RelY="-0.03225806451612903" ArrowHead="Arrow" /> </Graphics> <Xref Database="Reactome" ID="5398793" /> </Interaction> <Interaction GraphId="bea53"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="363.0" Y="661.0" GraphRef="f4839" RelX="0.0" RelY="0.6599999999999682" /> <Point X="400.0" Y="687.0" GraphRef="de5d9" RelX="-1.0" RelY="0.0" ArrowHead="Arrow" /> </Graphics> <Xref Database="Reactome" ID="5398793" /> </Interaction> <Interaction GraphId="fa448"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="133.0" Y="459.0" GraphRef="d0199" RelX="0.981651376146789" RelY="0.0" /> <Point X="363.0" Y="661.0" GraphRef="f75b4" RelX="0.0" RelY="33.0" ArrowHead="mim-catalysis" /> </Graphics> <Xref Database="Reactome" ID="5398793" /> </Interaction> <Interaction GraphId="d09b9"> <Comment Source="Reactome">This event has been computationally inferred from an event that has been demonstrated in another species.&lt;p&gt;The inference is based on Ensembl Compara orthology projection. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped ortholog or paralog are inferred to the other species. High-level events are also inferred for these events to allow for easier navigation.&lt;p&gt;Details of projection methods and parameters may be found &lt;a href="/projection.html"&gt;here.&lt;/a&gt;&lt;p&gt;</Comment> <Attribute Key="reactome_id" Value="5400754" /> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="362.0" Y="424.0" /> <Point X="362.0" Y="501.0" /> <Anchor Position="0.0" Shape="None" GraphId="ff0f7" /> <Anchor Position="0.99" Shape="None" GraphId="afcd8" /> <Anchor Position="0.5" Shape="None" GraphId="e81d3" /> </Graphics> <Xref Database="Reactome" ID="5400754" /> </Interaction> <Interaction GraphId="e05dc"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="362.0" Y="382.0" GraphRef="be01b" RelX="-0.018867924528301886" RelY="0.9354838709677419" /> <Point X="362.0" Y="424.0" GraphRef="ff0f7" RelX="0.0" RelY="0.0" /> </Graphics> <Xref Database="Reactome" ID="5400754" /> </Interaction> <Interaction GraphId="fdbe4"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="387.0" Y="395.0" GraphRef="dab73" RelX="-1.0" RelY="0.0" /> <Point X="362.0" Y="424.0" GraphRef="ff0f7" RelX="0.0" RelY="0.0" /> </Graphics> <Xref Database="Reactome" ID="5400754" /> </Interaction> <Interaction GraphId="a3ead"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="327.0" Y="397.0" GraphRef="c2715" RelX="0.9512195121951219" RelY="-0.02857142857142857" /> <Point X="362.0" Y="424.0" GraphRef="ff0f7" RelX="0.0" RelY="0.0" /> </Graphics> <Xref Database="Reactome" ID="5400754" /> </Interaction> <Interaction GraphId="fecd0"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="362.0" Y="501.0" GraphRef="afcd8" RelX="0.0" RelY="0.7699999999999818" /> <Point X="408.0" Y="523.0" GraphRef="dbe8d" RelX="-1.0" RelY="0.0" ArrowHead="Arrow" /> </Graphics> <Xref Database="Reactome" ID="5400754" /> </Interaction> <Interaction GraphId="e0f24"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="362.0" Y="501.0" GraphRef="afcd8" RelX="0.0" RelY="0.7699999999999818" /> <Point X="362.0" Y="522.0" GraphRef="b3d92" RelX="-0.0196078431372549" RelY="-1.0" ArrowHead="Arrow" /> </Graphics> <Xref Database="Reactome" ID="5400754" /> </Interaction> <Interaction GraphId="feb6d"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="362.0" Y="501.0" GraphRef="afcd8" RelX="0.0" RelY="0.7699999999999818" /> <Point X="306.0" Y="530.0" GraphRef="e898b" RelX="1.0" RelY="-0.030303030303030304" ArrowHead="Arrow" /> </Graphics> <Xref Database="Reactome" ID="5400754" /> </Interaction> <Interaction GraphId="b1cba"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="362.0" Y="501.0" GraphRef="afcd8" RelX="0.0" RelY="0.7699999999999818" /> <Point X="308.0" Y="491.0" GraphRef="a1133" RelX="1.0" RelY="-0.034482758620689655" ArrowHead="Arrow" /> </Graphics> <Xref Database="Reactome" ID="5400754" /> </Interaction> <Interaction GraphId="e5ec7"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="133.0" Y="459.0" GraphRef="d0199" RelX="0.981651376146789" RelY="0.0" /> <Point X="362.0" Y="501.0" GraphRef="e81d3" RelX="0.0" RelY="38.5" ArrowHead="mim-catalysis" /> </Graphics> <Xref Database="Reactome" ID="5400754" /> </Interaction> <Interaction GraphId="d16cd"> <Comment Source="Reactome">This event has been computationally inferred from an event that has been demonstrated in another species.&lt;p&gt;The inference is based on Ensembl Compara orthology projection. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped ortholog or paralog are inferred to the other species. High-level events are also inferred for these events to allow for easier navigation.&lt;p&gt;Details of projection methods and parameters may be found &lt;a href="/projection.html"&gt;here.&lt;/a&gt;&lt;p&gt;</Comment> <Attribute Key="reactome_id" Value="5398679" /> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="200.0" Y="221.0" /> <Point X="200.0" Y="314.0" /> <Anchor Position="0.0" Shape="None" GraphId="b7fa4" /> <Anchor Position="0.99" Shape="None" GraphId="aa469" /> <Anchor Position="0.5" Shape="None" GraphId="edd84" /> </Graphics> <Xref Database="Reactome" ID="5398679" /> </Interaction> <Interaction GraphId="b206b"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="200.0" Y="197.0" GraphRef="f6fc8" RelX="0.0" RelY="0.9259259259259259" /> <Point X="200.0" Y="221.0" GraphRef="b7fa4" RelX="0.0" RelY="0.0" /> </Graphics> <Xref Database="Reactome" ID="5398679" /> </Interaction> <Interaction GraphId="c9f2b"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="167.0" Y="209.0" GraphRef="c5150" RelX="1.0" RelY="0.0" /> <Point X="200.0" Y="221.0" GraphRef="b7fa4" RelX="0.0" RelY="0.0" /> </Graphics> <Xref Database="Reactome" ID="5398679" /> </Interaction> <Interaction GraphId="f623a"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="241.0" Y="205.0" GraphRef="c2dab" RelX="-1.0" RelY="0.0" /> <Point X="200.0" Y="221.0" GraphRef="b7fa4" RelX="0.0" RelY="0.0" /> </Graphics> <Xref Database="Reactome" ID="5398679" /> </Interaction> <Interaction GraphId="b2b3c"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="200.0" Y="314.0" GraphRef="aa469" RelX="0.0" RelY="0.9300000000000068" /> <Point X="336.0" Y="367.0" GraphRef="be01b" RelX="-1.0" RelY="-0.03225806451612903" ArrowHead="Arrow" /> </Graphics> <Xref Database="Reactome" ID="5398679" /> </Interaction> <Interaction GraphId="eccf6"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="200.0" Y="314.0" GraphRef="aa469" RelX="0.0" RelY="0.9300000000000068" /> <Point X="146.0" Y="307.0" GraphRef="b05bb" RelX="0.9534883720930233" RelY="-0.030303030303030304" ArrowHead="Arrow" /> </Graphics> <Xref Database="Reactome" ID="5398679" /> </Interaction> <Interaction GraphId="ff111"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="200.0" Y="314.0" GraphRef="aa469" RelX="0.0" RelY="0.9300000000000068" /> <Point X="168.0" Y="355.0" GraphRef="b180b" RelX="0.9607843137254902" RelY="0.0" ArrowHead="Arrow" /> </Graphics> <Xref Database="Reactome" ID="5398679" /> </Interaction> <Interaction GraphId="bce1f"> <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0"> <Point X="133.0" Y="459.0" GraphRef="d0199" RelX="0.981651376146789" RelY="0.0" /> <Point X="200.0" Y="314.0" GraphRef="edd84" RelX="0.0" RelY="46.5" ArrowHead="mim-catalysis" /> </Graphics> <Xref Database="Reactome" ID="5398679" /> </Interaction> <Label TextLabel="cytosol" GraphId="e734c" GroupRef="ad97e"> <Graphics CenterX="84.0" CenterY="682.5" Width="64.0" Height="33.0" ZOrder="28672" FillColor="ffffff" FontSize="10" Valign="Middle" /> </Label> <Shape GraphId="b1641" GroupRef="ad97e"> <Attribute Key="org.pathvisio.DoubleLineProperty" Value="Double" /> <Graphics CenterX="352.5" CenterY="375.0" Width="697.0" Height="742.0" ZOrder="16384" FontSize="10" Valign="Middle" ShapeType="RoundedRectangle" LineThickness="3.0" Color="c0c0c0" Rotation="0.0" /> </Shape> <Group GroupId="ad97e" GraphId="b0e3d" Style="Group" /> <InfoBox CenterX="0.0" CenterY="0.0" /> <Biopax /> </Pathway>

• Template:AuthorInfo
• Template:CheckAvailable (protected)
• Template:Help:LiteratureReferences (protected)
• Template:PathwayPage:History
• Template:PathwayPage:Xrefs

Return to Gibberellin biosynthesis II (early C-3 hydroxylation) (Arabidopsis thaliana).