Flowering time pathway (Oryza sativa)

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<?xml version="1.0" encoding="UTF-8"?> <Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Flowering time pathway" Version="20100607" Maintainer="Mamatha Hanumappa" Organism="Oryza sativa"> <Comment Source="WikiPathways-category">Cellular Process</Comment> <Graphics BoardWidth="1538.1666666666647" BoardHeight="1451.0"/> <DataNode TextLabel="FLOWERING" GraphId="aca85" Type="Pathway" GroupRef="b49d2"> <Graphics CenterX="823.5" CenterY="1386.5" Width="131.0" Height="53.0" ZOrder="-30" FontWeight="Bold" FontSize="14" Valign="Middle" Color="cc00ff"/> <Xref Database="" ID=""/> </DataNode> <DataNode TextLabel="NF-YA6" GraphId="c194a" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="1249.8481792717073" CenterY="590.5018207282911" Width="60.53333333333321" Height="10.5" ZOrder="-22" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g07880"/> </DataNode> <DataNode TextLabel="NF-YA5" GraphId="eb651" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="1249.8481792717073" CenterY="580.5018207282915" Width="60.53333333333321" Height="10.5" ZOrder="-21" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g53620"/> </DataNode> <DataNode TextLabel="NF-YA10b" GraphId="fcea1" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="1249.8481792717073" CenterY="620.5018207282905" Width="60.53333333333321" Height="10.5" ZOrder="-19" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g06470"/> </DataNode> <DataNode TextLabel="NF-YA10a" GraphId="defac" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="1249.8481792717073" CenterY="610.5018207282908" Width="60.53333333333321" Height="10.5" ZOrder="-18" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g44540"/> </DataNode> <DataNode TextLabel="NF-YA1" GraphId="de501" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="1249.8481792717073" CenterY="540.5018207282915" Width="60.53333333333312" Height="10.5" ZOrder="-17" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g48970"/> </DataNode> <DataNode TextLabel="NF-YA3" GraphId="bc435" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="1249.8481792717073" CenterY="560.5018207282912" Width="60.53333333333321" Height="10.499999999999954" ZOrder="-16" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g41720"/> </DataNode> <DataNode TextLabel="NF-YA2" GraphId="aed83" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="1249.8481792717073" CenterY="550.5018207282915" Width="60.53333333333321" Height="10.5" ZOrder="-15" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g42400"/> </DataNode> <DataNode TextLabel="NF-YA8" GraphId="be5e9" Type="GeneProduct" GroupRef="acc58"> <Graphics CenterX="1249.8481792717073" CenterY="600.501820728291" Width="60.53333333333321" Height="10.5" ZOrder="-14" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g29760"/> </DataNode> <DataNode TextLabel="NF-YA4 " GraphId="aa40a" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="1249.8481792717073" CenterY="570.5018207282915" Width="60.53333333333321" Height="10.5" ZOrder="-13" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g41880"/> </DataNode> <DataNode TextLabel="ES43a" GraphId="a0d4f" Type="GeneProduct" GroupRef="fb2c0"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="956.6071428571424" CenterY="736.75" Width="44.619047619048615" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g21770"/> </DataNode> <DataNode TextLabel="TIC" GraphId="a1ada" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="397.83333333333337" CenterY="333.25" Width="62.333333333333364" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g38360"/> </DataNode> <DataNode TextLabel="RBX1" GraphId="a2db4" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="608.1666666666667" CenterY="205.91666666666657" Width="46.333333333333485" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g01700"/> </DataNode> <DataNode TextLabel="PHYB/PHYD" GraphId="a2f20" Type="GeneProduct" GroupRef="f6806"> <Comment>Retrieved through Gramene</Comment> <Graphics CenterX="948.3333333333333" CenterY="344.9999999999998" Width="60.66666666666687" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g19590"/> </DataNode> <DataNode TextLabel="CUL4B" GraphId="a35ad" Type="GeneProduct"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="607.1666666666666" CenterY="315.25" Width="62.33333333333346" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g57290"/> </DataNode> <DataNode TextLabel="OsPRP3" GraphId="a39b3" Type="GeneProduct"> <BiopaxRef>e84</BiopaxRef> <Graphics CenterX="1240.25" CenterY="1159.9285714285716" Width="57.0952380952383" Height="13.85714285714289" ZOrder="32768" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g07500"/> </DataNode> <DataNode TextLabel="JARID1C" GraphId="a3cf1" Type="GeneProduct"> <Comment>Retrieved through Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="85.23214285714221" CenterY="977.8928571428569" Width="49.53571428571536" Height="11.785714285713766" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g05680"/> </DataNode> <DataNode TextLabel="VRN2" GraphId="a40e6" Type="GeneProduct" GroupRef="fccfd"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="46.99999999999999" CenterY="831.7499999999943" Width="40.000000000000014" Height="13.333333333332575" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os9g13630"/> </DataNode> <DataNode TextLabel="PFT1" GraphId="a4e88" Type="GeneProduct"> <Comment>Retrieved through Gramene/RAD-UCDavis (August 25, 2010)</Comment> <Graphics CenterX="935.0" CenterY="428.75" Width="34.0" Height="18.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g13610"/> </DataNode> <DataNode TextLabel="CDC73" GraphId="a4f38" Type="GeneProduct" GroupRef="d8585"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="93.30581610543345" CenterY="938.5000000000018" Width="41.3883677891331" Height="12.714285714286234" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g46190"/> </DataNode> <DataNode TextLabel="RFT1" GraphId="a58eb" Type="GeneProduct"> <Comment>Paralog of Hd3a. Acts as a rice florigen under long days.</Comment> <BiopaxRef>c57</BiopaxRef> <BiopaxRef>cee</BiopaxRef> <Graphics CenterX="624.5" CenterY="838.625" Width="39.0" Height="20.75" ZOrder="32768" FontSize="10" Valign="Middle" Color="ff00ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g06300"/> </DataNode> <DataNode TextLabel="OsHUA2" GraphId="a6813" Type="GeneProduct"> <Graphics CenterX="316.5" CenterY="653.25" Width="51.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g01054"/> </DataNode> <DataNode TextLabel="FTL1" GraphId="a9b9e" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010). Paralog of Hd3a. InParanoid retrieves Hd3a, RFT1 and FTL1 as orthologs of Arabidopsis FT (At1G65480) and TSF (AT4G20370). Hd3a is the ortholog of FT. </Comment> <Graphics CenterX="890.0" CenterY="793.25" Width="62.0" Height="29.5" ZOrder="32768" FontSize="10" Valign="Middle" Color="ff00ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g11940"/> </DataNode> <DataNode TextLabel="COL5" GraphId="aa36b" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="579.1666666666666" CenterY="358.25" Width="61.66666666666664" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g42020"/> </DataNode> <DataNode TextLabel="PRR59" GraphId="ab0c9" Type="GeneProduct" GroupRef="f1f6f"> <BiopaxRef>d2b</BiopaxRef> <BiopaxRef>a60</BiopaxRef> <Graphics CenterX="493.5" CenterY="87.66666666666669" Width="45.0" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g05930"/> </DataNode> <DataNode TextLabel="GF14b" GraphId="ab116" Type="GeneProduct" GroupRef="d5b40"> <Comment>Retrieved through Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="667.2321428571423" CenterY="632.3928571428569" Width="39.53571428571536" Height="11.785714285713766" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g38870"/> </DataNode> <DataNode TextLabel="NDPK2" GraphId="ab2c8" Type="GeneProduct"> <Comment>INTERACTS WITH PRMT5 TO PROMOTE VEGETATIVE GROWTH</Comment> <Comment>Retrieved through NCBI/Gramene</Comment> <BiopaxRef>fdd</BiopaxRef> <Graphics CenterX="113.0" CenterY="600.25" Width="36.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g36194"/> </DataNode> <DataNode TextLabel="PIE1" GraphId="abaa4" Type="GeneProduct" GroupRef="b5380"> <Comment>This denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6; Annotated with Arabidopsis ortholog; osPIE1 identification was retracted in 2011</Comment> <Graphics CenterX="204.10714285714243" CenterY="807.2500000000001" Width="33.78571428571513" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="TAIR" ID="AT3G12810"/> </DataNode> <DataNode TextLabel="HAP3F" GraphId="abb4a" Type="GeneProduct" GroupRef="acc58"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="1347.308123249298" CenterY="479.7051820728295" Width="66.00000000000018" Height="10.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g41580"/> </DataNode> <DataNode TextLabel="DI19-2" GraphId="abcc1" Type="GeneProduct"> <Comment>Retrieved through Gramene/NCBI</Comment> <Comment>HRB1 represents a signaling step that regulates FLOWERING LOCUS T (FT) expression downstream of red and blue light perception.</Comment> <BiopaxRef>cca</BiopaxRef> <Graphics CenterX="876.859943977591" CenterY="241.0" Width="37.05322128851533" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g28980"/> </DataNode> <DataNode TextLabel="FBO10" GraphId="ac458" Type="GeneProduct" GroupRef="f39cd"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="620.4999999999998" CenterY="502.0" Width="43.000000000000455" Height="14.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g34460"/> </DataNode> <DataNode TextLabel="OSE2" GraphId="acaf0" Type="GeneProduct"> <Comment>Retrieved through the Gramene (August 25, 2010)</Comment> <Graphics CenterX="1240.25" CenterY="1233.706846524261" Width="57.0952380952383" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g64730"/> </DataNode> <DataNode TextLabel="NF-YC2" GraphId="ae10e" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="1328.9406162464963" CenterY="665.6043417366935" Width="62.13333333333321" Height="10.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g07450"/> </DataNode> <DataNode TextLabel="LHP1" GraphId="aeedf" Type="GeneProduct"> <Comment>Retrieved with Gramene</Comment> <Graphics CenterX="183.99999999999991" CenterY="573.5833333333333" Width="34.00000000000017" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g17770"/> </DataNode> <DataNode TextLabel="ID1" GraphId="b0712" Type="GeneProduct"> <Graphics CenterX="531.0" CenterY="741.0" Width="32.0" Height="10.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Gramene Rice" ID="LOC_Os10g28330"/> </DataNode> <DataNode TextLabel="DET1" GraphId="b0e96" Type="GeneProduct"> <BiopaxRef>dea</BiopaxRef> <BiopaxRef>fef</BiopaxRef> <Graphics CenterX="731.0" CenterY="145.25" Width="38.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g01484"/> </DataNode> <DataNode TextLabel="NF-YC8" GraphId="b16fb" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="1328.9406162464963" CenterY="686.6967787114841" Width="62.13333333333321" Height="10.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g30310"/> </DataNode> <DataNode TextLabel="JMJ704" GraphId="b1ae6" Type="GeneProduct" GroupRef="fd05f"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="779.6904761904757" CenterY="852.75" Width="44.619047619048615" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g23670"/> </DataNode> <DataNode TextLabel="OsMADS5" GraphId="b1bc4" Type="GeneProduct"> <BiopaxRef>d9c</BiopaxRef> <Graphics CenterX="1240.25" CenterY="1207.25" Width="57.0952380952383" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g06750"/> </DataNode> <DataNode TextLabel="LHY" GraphId="b226a" Type="GeneProduct"> <Comment>Alternate Gene_ID: OsCCA1</Comment> <BiopaxRef>a60</BiopaxRef> <Graphics CenterX="460.0" CenterY="155.75" Width="42.0" Height="18.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g06110"/> </DataNode> <DataNode TextLabel="SINAT5" GraphId="b232b" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Comment>Ubiquitinates LHY to degrade it and is inhibited by DET1 which stabilizes LHY</Comment> <BiopaxRef>dd3</BiopaxRef> <Graphics CenterX="589.3058161054335" CenterY="127.53571428571377" Width="41.3883677891331" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g19140"/> </DataNode> <DataNode TextLabel="LFL1" GraphId="b3208" Type="GeneProduct"> <Comment>Represses Ehd1 in LD</Comment> <BiopaxRef>cee</BiopaxRef> <BiopaxRef>fa6</BiopaxRef> <Graphics CenterX="541.5" CenterY="692.25" Width="35.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g56610"/> </DataNode> <DataNode TextLabel="COP1" GraphId="b39a2" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="566.9999999999998" CenterY="395.8333333333333" Width="34.0" Height="25.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g53140"/> </DataNode> <DataNode TextLabel="ZTLa" GraphId="b3a1a" Type="GeneProduct" GroupRef="c5b2c"> <Comment>Alternate Gene_ID: ZTL2</Comment> <Comment>Retrieved through NCBI (August 25, 2010)</Comment> <BiopaxRef>a60</BiopaxRef> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="503.0" CenterY="211.75" Width="60.00000000000006" Height="18.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g47890"/> </DataNode> <DataNode TextLabel="OsCam2" GraphId="b3ffd" Type="GeneProduct"> <Graphics CenterX="969.0" CenterY="118.25" Width="46.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g41210"/> </DataNode> <DataNode TextLabel="EFS" GraphId="b452e" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="204.10714285714243" CenterY="847.7500000000001" Width="33.78571428571513" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g34850"/> </DataNode> <DataNode TextLabel="CKB1" GraphId="b46b7" Type="GeneProduct" GroupRef="ad0aa"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Comment>See Flowering Time Orthos Clean-25mar10 (Sheet4)</Comment> <Graphics CenterX="236.48214285714243" CenterY="174.66666666666666" Width="39.0" Height="15.333333333333314" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g41520"/> </DataNode> <DataNode TextLabel="LHP1" GraphId="b4d61" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="966.0" CenterY="680.25" Width="62.00000000000011" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g17770"/> </DataNode> <DataNode TextLabel="GI" GraphId="b50be" Type="GeneProduct" GroupRef="af6ed"> <Comment>Required for induction of Ehd1 and Hd3a, but not thru Se5 and Ghd7 repression</Comment> <Comment>Retrieved through NCBI (August 25, 2010)</Comment> <BiopaxRef>cee</BiopaxRef> <Graphics CenterX="533.5" CenterY="471.75" Width="61.0" Height="18.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g08700"/> </DataNode> <DataNode TextLabel="PCFS4" GraphId="b51b2" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="106.80581610543345" CenterY="408.3928571428569" Width="40.3883677891331" Height="14.785714285713766" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g08830"/> </DataNode> <DataNode TextLabel="ZOS1-20" GraphId="b5acd" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="138.2321428571422" CenterY="1006.5357142857138" Width="51.535714285715585" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g67970"/> </DataNode> <DataNode TextLabel="FLK" GraphId="b5bc2" Type="GeneProduct" GroupRef="b9e34"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="85.83333333333331" CenterY="521.75" Width="42.33333333333337" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g40560"/> </DataNode> <DataNode TextLabel="LWD" GraphId="b61d4" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="469.1666666666667" CenterY="587.0" Width="32.66666666666663" Height="14.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g32430"/> </DataNode> <DataNode TextLabel="SPL13" GraphId="b6b46" Type="GeneProduct"> <Comment>Retrieved through Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="761.625850340136" CenterY="1040.25" Width="70.66666666666673" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g32170"/> </DataNode> <DataNode TextLabel="HOS1" GraphId="b7688" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="199.5" CenterY="592.25" Width="35.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g52700"/> </DataNode> <DataNode TextLabel="ATX-1" GraphId="b7701" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="76.10714285714266" CenterY="636.5357142857138" Width="35.785714285714675" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g04890"/> </DataNode> <DataNode TextLabel="PIN1OS" GraphId="b79c4" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="285.0" CenterY="905.75" Width="46.0" Height="12.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g56800"/> </DataNode> <DataNode TextLabel="OsMADS31" GraphId="b7af3" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="891.2321428571422" CenterY="854.0357142857138" Width="55.535714285715585" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g52410"/> </DataNode> <DataNode TextLabel="EMF" GraphId="b82a6" Type="GeneProduct" GroupRef="a16bf"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="227.5" CenterY="633.0357142857138" Width="29.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g08034"/> </DataNode> <DataNode TextLabel="OsMADS7" GraphId="b8c59" Type="GeneProduct"> <BiopaxRef>c58</BiopaxRef> <Graphics CenterX="1241.25" CenterY="1174.0" Width="57.0952380952383" Height="14.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g41950"/> </DataNode> <DataNode TextLabel="FYPP3" GraphId="b9de9" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="736.8058161054335" CenterY="376.53571428571377" Width="38.3883677891331" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g49690"/> </DataNode> <DataNode TextLabel="VEF" GraphId="ba375" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="218.10714285714255" CenterY="613.0357142857138" Width="32.2142857142851" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g13630"/> </DataNode> <DataNode TextLabel="LUX" GraphId="ba3e1" Type="GeneProduct" GroupRef="d41c7"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="332.0" CenterY="146.75" Width="52.0" Height="18.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g74020"/> </DataNode> <DataNode TextLabel="FPA" GraphId="bab28" Type="GeneProduct" GroupRef="b9e34"> <Comment>Gene ID assigned by Mamatha Hanumappa (August 25, 2010)</Comment> <Graphics CenterX="85.83333333333331" CenterY="508.25000000000006" Width="42.33333333333337" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g34070"/> </DataNode> <DataNode TextLabel="AGL9" GraphId="baf38" Type="GeneProduct"> <Graphics CenterX="197.0" CenterY="1080.25" Width="38.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Entrez Gene" ID="4325533"/> </DataNode> <DataNode TextLabel="NF-YB1" GraphId="bb359" Type="GeneProduct" GroupRef="acc58"> <Comment>Retrieved through NCBI /Gramene/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="1347.308123249298" CenterY="532.0917366946778" Width="66.00000000000018" Height="10.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g49410"/> </DataNode> <DataNode TextLabel="OsMADS29" GraphId="bb528" Type="GeneProduct"> <Graphics CenterX="1005.1666666666667" CenterY="154.25" Width="64.33333333333329" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g07430"/> </DataNode> <DataNode TextLabel="Ehd1" GraphId="bb5cb" Type="GeneProduct"> <Comment>Retrieved through NCBI (August 25, 2010)</Comment> <Comment>Induces Hd3a under SD</Comment> <BiopaxRef>b5e</BiopaxRef> <BiopaxRef>d2b</BiopaxRef> <Graphics CenterX="601.0" CenterY="703.75" Width="34.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g32600"/> </DataNode> <DataNode TextLabel="ESP4" GraphId="bc637" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="73.23214285714232" CenterY="428.03571428571377" Width="35.53571428571536" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g49320"/> </DataNode> <DataNode TextLabel="ZTLa" GraphId="bd648" Type="GeneProduct" GroupRef="f39cd"> <BiopaxRef>a60</BiopaxRef> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="620.4999999999998" CenterY="530.0" Width="43.000000000000455" Height="14.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g47890"/> </DataNode> <DataNode TextLabel="ZnF36" GraphId="bd6fb" Type="GeneProduct" GroupRef="d5af7"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Comment>OsFES1 is a different gene</Comment> <Graphics CenterX="191.75" CenterY="953.8333333333314" Width="52.499999999999886" Height="12.833333333332575" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g41790"/> </DataNode> <DataNode TextLabel="ESD4a" GraphId="bd7d7" Type="GeneProduct" GroupRef="ec90e"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="333.2916666666665" CenterY="686.916666666667" Width="66.75000000000037" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g25370"/> </DataNode> <DataNode TextLabel="FRL1" GraphId="be170" Type="GeneProduct" GroupRef="d5af7"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Comment>LOC_Os09g07380 Frigida (closest ortholog)</Comment> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="191.75" CenterY="928.1666666666663" Width="52.499999999999886" Height="12.833333333332575" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g09310"/> </DataNode> <DataNode TextLabel="OsMADS3" GraphId="bebf9" Type="GeneProduct"> <BiopaxRef>aac</BiopaxRef> <Graphics CenterX="1240.25" CenterY="1187.25" Width="57.0952380952383" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g10504"/> </DataNode> <DataNode TextLabel="ELF9" GraphId="bec7f" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappan (August 25, 2010)</Comment> <Graphics CenterX="253.5" CenterY="849.25" Width="31.0" Height="9.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g41910"/> </DataNode> <DataNode TextLabel="OsMADS51" GraphId="bf11f" Type="GeneProduct"> <Comment>Retrieved through NCBI (August 25, 2010)</Comment> <BiopaxRef>b66</BiopaxRef> <BiopaxRef>ad8</BiopaxRef> <Graphics CenterX="680.0" CenterY="488.25" Width="62.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g69850"/> </DataNode> <DataNode TextLabel="VIP2" GraphId="c0b91" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="591.1666666666663" CenterY="556.5833333333333" Width="40.333333333332575" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g06270"/> </DataNode> <DataNode TextLabel="FLC" GraphId="c0f6d" Type="GeneProduct"> <Comment>Retrieved through NCBI/Gramene (August 25, 2010)</Comment> <BiopaxRef>b99</BiopaxRef> <BiopaxRef>a8d</BiopaxRef> <Graphics CenterX="1350.6666666666667" CenterY="1163.5238095238094" Width="42.857142857143074" Height="15.238095238095237" ZOrder="32768" FontSize="10" Valign="Middle" Color="ff0000"/> <Xref Database="TAIR" ID="AT5G10140"/> </DataNode> <DataNode TextLabel="Dof12" GraphId="c1a63" Type="GeneProduct"> <Graphics CenterX="680.75" CenterY="860.25" Width="42.5" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g47810"/> </DataNode> <DataNode TextLabel="TOC1" GraphId="c1c49" Type="GeneProduct" GroupRef="b2c39"> <BiopaxRef>a60</BiopaxRef> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="485.1666666666667" CenterY="297.75" Width="65.66666666666671" Height="18.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g40510"/> </DataNode> <DataNode TextLabel="SEF1" GraphId="c220b" Type="GeneProduct" GroupRef="b5380"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="204.10714285714243" CenterY="834.2500000000001" Width="33.78571428571513" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g25260"/> </DataNode> <DataNode TextLabel="EZ3" GraphId="c2395" Type="GeneProduct" GroupRef="fccfd"> <Comment>Gene ID assigned by NCBI, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="46.99999999999999" CenterY="792.416666666664" Width="40.000000000000014" Height="13.333333333332575" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g19480"/> </DataNode> <DataNode TextLabel="MADS18" GraphId="c2af4" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="823.5" CenterY="1066.25" Width="50.9999999999999" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g41370"/> </DataNode> <DataNode TextLabel="TCPL1" GraphId="c2c3f" Type="GeneProduct"> <Comment>Retrieved with Gramene</Comment> <Graphics CenterX="440.33333333333337" CenterY="211.75" Width="60.66666666666664" Height="18.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g42380"/> </DataNode> <DataNode TextLabel="CKB4" GraphId="c2d4b" Type="GeneProduct" GroupRef="ad0aa"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="236.48214285714243" CenterY="190.03571428571377" Width="40.96428571428487" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g31280"/> </DataNode> <DataNode TextLabel="ZOS9-19" GraphId="c3e60" Type="GeneProduct" GroupRef="d5af7"> <Comment>Alternate Gene ID: OsSUF4</Comment> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="191.75" CenterY="966.666666666664" Width="52.499999999999886" Height="12.833333333332575" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g38790"/> </DataNode> <DataNode TextLabel="EZ3" GraphId="c458b" Type="GeneProduct"> <Comment>Gene ID assigned by NCBI, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="546.3333333333333" CenterY="1183.25" Width="60.33333333333371" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g19480"/> </DataNode> <DataNode TextLabel="NF-YC2a" GraphId="c4890" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="1328.9406162464963" CenterY="675.6043417366935" Width="62.13333333333321" Height="10.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g45640"/> </DataNode> <DataNode TextLabel="LHP1" GraphId="c499a" Type="GeneProduct" GroupRef="fdfb7"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="813.25" CenterY="938.0" Width="39.5" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g17770"/> </DataNode> <DataNode TextLabel="ROC5" GraphId="c4bab" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="656.8333333333333" CenterY="464.25" Width="62.33333333333329" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g45250"/> </DataNode> <DataNode TextLabel="OsMADS6" GraphId="c4d8e" Type="GeneProduct"> <Comment>Retrieved through NCBI/Gramene (August 25, 2010)</Comment> <Graphics CenterX="550.1666666666667" CenterY="885.25" Width="64.33333333333329" Height="11.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_OS02G45770.1"/> </DataNode> <DataNode TextLabel="VIL2" GraphId="c4fd3" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="295.3333333333332" CenterY="634.25" Width="45.3333333333336" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g05840"/> </DataNode> <DataNode TextLabel="FVE" GraphId="c5354" Type="GeneProduct" GroupRef="b9e34"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="85.83333333333331" CenterY="494.75000000000006" Width="42.33333333333337" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g51300"/> </DataNode> <DataNode TextLabel="OsLD" GraphId="c5a44" Type="GeneProduct" GroupRef="b9e34"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="85.83333333333331" CenterY="535.25" Width="42.33333333333337" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g70810"/> </DataNode> <DataNode TextLabel="OsbZIP10" GraphId="c6a9f" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <BiopaxRef>d2b</BiopaxRef> <Graphics CenterX="188.83333333333331" CenterY="1053.25" Width="62.33333333333333" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g64000"/> </DataNode> <DataNode TextLabel="LUX" GraphId="c6e82" Type="GeneProduct" GroupRef="b2c39"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="485.5" CenterY="316.75" Width="65.00000000000006" Height="18.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g74020"/> </DataNode> <DataNode TextLabel="PIE1" GraphId="c75ca" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="118.55012964563528" CenterY="626.028738115817" Width="29.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g46450"/> </DataNode> <DataNode TextLabel="FD1" GraphId="c84b6" Type="GeneProduct"> <Comment>Retrieved through Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="761.0" CenterY="977.25" Width="38.0" Height="17.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g36910"/> </DataNode> <DataNode TextLabel="OsCRY1b" GraphId="c85ff" Type="GeneProduct" GroupRef="ab3e5"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="652.0" CenterY="401.5" Width="51.33333333333343" Height="25.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g37920"/> </DataNode> <DataNode TextLabel="GF14e" GraphId="c8873" Type="GeneProduct" GroupRef="d5b40"> <Comment>Retrieved through Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="667.2321428571423" CenterY="644.1785714285706" Width="39.53571428571536" Height="11.785714285713766" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g36974"/> </DataNode> <DataNode TextLabel="ELF5" GraphId="c8b76" Type="GeneProduct" GroupRef="ec90e"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="332.58333333333417" CenterY="672.5833333333335" Width="65.00000000000006" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g09510"/> </DataNode> <DataNode TextLabel="DPBF3" GraphId="c9702" Type="GeneProduct"> <Comment>Retrieved through Gramene/NCBI</Comment> <Graphics CenterX="761.0" CenterY="917.25" Width="36.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g59760"/> </DataNode> <DataNode TextLabel="RAV1-like1" GraphId="c9c2d" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="976.3333333333327" CenterY="834.5833333333331" Width="60.33333333333329" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g47650"/> </DataNode> <DataNode TextLabel="NF-YC11" GraphId="ca9d0" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="1328.9406162464963" CenterY="708.3774509803926" Width="62.13333333333321" Height="10.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g41450"/> </DataNode> <DataNode TextLabel="ELF8" GraphId="cac42" Type="GeneProduct" GroupRef="d8585"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="93.30581610543345" CenterY="900.3571428571431" Width="41.3883677891331" Height="12.714285714286234" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g29360"/> </DataNode> <DataNode TextLabel="EDM2" GraphId="cad46" Type="GeneProduct"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="171.0" CenterY="549.25" Width="42.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g24946"/> </DataNode> <DataNode TextLabel="OsMADS27" GraphId="cb9af" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Comment>Specifies floral state by determining floral organ and meristem identities, with OsMADS1and OsMADS17. Mutants have retarded establishement of floral identity,have mosaic floral organs and palea acqures lemma identity</Comment> <BiopaxRef>c0f</BiopaxRef> <BiopaxRef>b0b</BiopaxRef> <BiopaxRef>b2c</BiopaxRef> <Graphics CenterX="360.5" CenterY="1061.5" Width="71.0" Height="29.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g36924"/> </DataNode> <DataNode TextLabel="SRT2" GraphId="cc45a" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/Phytozome/NCBI (August 25, 2010)</Comment> <Graphics CenterX="92.0" CenterY="710.25" Width="38.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g07950"/> </DataNode> <DataNode TextLabel="bhlh102" GraphId="cc894" Type="GeneProduct"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="745.0" CenterY="324.75" Width="62.0000000000001" Height="18.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g41650"/> </DataNode> <DataNode TextLabel="ELF4" GraphId="ccc77" Type="GeneProduct" GroupRef="d41c7"> <Comment>BLAST AtELF4 (AT2G40080) confirm on Gramene, assigned by Mamatha Hanumappa</Comment> <Graphics CenterX="332.0" CenterY="164.75" Width="52.0" Height="18.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g40610"/> </DataNode> <DataNode TextLabel="FRI" GraphId="cd58f" Type="GeneProduct" GroupRef="d5af7"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="191.75" CenterY="915.3333333333337" Width="52.499999999999886" Height="12.833333333332575" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="" ID=""/> </DataNode> <DataNode TextLabel="CDF5" GraphId="cd9e7" Type="GeneProduct" GroupRef="e80ae"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="419.33333333333326" CenterY="561.6666666666666" Width="39.333333333333485" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g15900"/> </DataNode> <DataNode TextLabel="NF-YB4" GraphId="cec17" Type="GeneProduct" GroupRef="acc58"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="1347.308123249298" CenterY="522.0917366946779" Width="66.00000000000018" Height="10.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g38820"/> </DataNode> <DataNode TextLabel="ELF3b" GraphId="cec1e" Type="GeneProduct" GroupRef="b6bfd"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="556.3333333333335" CenterY="427.4166666666669" Width="34.0" Height="12.500000000000007" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g38530"/> </DataNode> <DataNode TextLabel="bZIP23" GraphId="cf1ed" Type="GeneProduct"> <Graphics CenterX="1033.1666666666665" CenterY="115.25" Width="62.33333333333324" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g52780"/> </DataNode> <DataNode TextLabel="HAP3D" GraphId="d02d2" Type="GeneProduct" GroupRef="acc58"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="1347.308123249298" CenterY="489.7051820728295" Width="66.00000000000018" Height="10.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g70890"/> </DataNode> <DataNode TextLabel="REC14" GraphId="d1136" Type="GeneProduct" GroupRef="d8585"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="93.30581610543345" CenterY="887.6428571428569" Width="41.3883677891331" Height="12.714285714286234" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g43890"/> </DataNode> <DataNode TextLabel="MAF3" GraphId="d2276" Type="GeneProduct"> <Comment>Retrieved through Gramene/NCBI (August 25, 2010)</Comment> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="1350.6666666666667" CenterY="1206.5833333333328" Width="42.857142857143074" Height="14.499999999999913" ZOrder="32768" FontSize="10" Valign="Middle" Color="ff0000"/> <Xref Database="TAIR" ID="AT5G65060"/> </DataNode> <DataNode TextLabel="NF-YC10" GraphId="d34a5" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="1328.9406162464963" CenterY="698.3774509803926" Width="62.13333333333321" Height="10.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g63530"/> </DataNode> <DataNode TextLabel="DCAF1" GraphId="d39a3" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="743.0" CenterY="220.75" Width="40.0" Height="14.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g59460"/> </DataNode> <DataNode TextLabel="LKP2" GraphId="d3cb9" Type="GeneProduct" GroupRef="f39cd"> <Comment>This is FBO8/ LOC_Os02g05700. Ortholog of At2G18915, LKP2 (77.4% Protein Similarity)(Gramene/NCBI); ZTL2 (PMID: 17132630);ZTLb (PMID: 20419097); LKP2 (mamatha-see ZTLb)</Comment> <BiopaxRef>a60</BiopaxRef> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="620.4999999999998" CenterY="516.0" Width="43.000000000000455" Height="14.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g05700"/> </DataNode> <DataNode TextLabel="ELF7" GraphId="d4981" Type="GeneProduct" GroupRef="d8585"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="93.30581610543345" CenterY="913.0714285714294" Width="41.3883677891331" Height="12.714285714286234" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g06070"/> </DataNode> <DataNode TextLabel="VRN1" GraphId="d5c76" Type="GeneProduct" GroupRef="fccfd"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="46.99999999999999" CenterY="818.4166666666617" Width="40.000000000000014" Height="13.333333333332575" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g40120"/> </DataNode> <DataNode TextLabel="NF-YB11" GraphId="d5d05" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="1347.308123249298" CenterY="553.5756302521008" Width="66.00000000000018" Height="11.532212885154195" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g39490"/> </DataNode> <DataNode TextLabel="FUS9" GraphId="d603c" Type="Protein"> <Graphics CenterX="603.0" CenterY="228.25" Width="38.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Uniprot-TrEMBL" ID="B9FUS9"/> </DataNode> <DataNode TextLabel="VIL2" GraphId="d66b0" Type="GeneProduct" GroupRef="fccfd"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="46.99999999999999" CenterY="805.0833333333292" Width="40.000000000000014" Height="13.333333333332575" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g05840"/> </DataNode> <DataNode TextLabel="bhlh105" GraphId="d6804" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="648.5" CenterY="350.75000000000057" Width="62.33333333333343" Height="18.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g18290"/> </DataNode> <DataNode TextLabel="PPR73" GraphId="d6b74" Type="GeneProduct" GroupRef="f1f6f"> <Comment>Retrieved through Gramene and NCBI (August 25, 2010)</Comment> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="492.5" CenterY="104.0" Width="45.0" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g17570"/> </DataNode> <DataNode TextLabel="CKA1" GraphId="d7b15" Type="GeneProduct" GroupRef="fb134"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Comment>LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab</Comment> <Graphics CenterX="207.23214285714232" CenterY="90.03571428571377" Width="39.53571428571536" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g55389"/> </DataNode> <DataNode TextLabel="FIE" GraphId="d7f31" Type="GeneProduct" GroupRef="fccfd"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="46.99999999999999" CenterY="765.7499999999989" Width="40.000000000000014" Height="13.333333333332575" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g04270"/> </DataNode> <DataNode TextLabel="OsMADS50" GraphId="d8867" Type="GeneProduct"> <Comment>OsSOC1</Comment> <BiopaxRef>cee</BiopaxRef> <BiopaxRef>b66</BiopaxRef> <BiopaxRef>d2b</BiopaxRef> <Graphics CenterX="280.6666666666667" CenterY="817.0" Width="61.33333333333335" Height="28.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g39130"/> </DataNode> <DataNode TextLabel="SLR1" GraphId="d8e41" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="1006.0" CenterY="965.25" Width="39.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g49990"/> </DataNode> <DataNode TextLabel="PAF1" GraphId="d8f70" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="204.10714285714243" CenterY="861.2500000000001" Width="33.78571428571513" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g04100"/> </DataNode> <DataNode TextLabel="CPS1" GraphId="d9438" Type="GeneProduct"> <Graphics CenterX="1022.0" CenterY="864.0" Width="62.0" Height="14.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g17780"/> </DataNode> <DataNode TextLabel="AP2" GraphId="d9a9c" Type="GeneProduct"> <Comment/> <Comment/> <Graphics CenterX="347.49999999999994" CenterY="599.583333333333" Width="36.999999999999886" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g55560"/> </DataNode> <DataNode TextLabel="HFR1" GraphId="d9f05" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <BiopaxRef>f0d</BiopaxRef> <Graphics CenterX="286.0" CenterY="74.25" Width="44.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g04740"/> </DataNode> <DataNode TextLabel="LDL3" GraphId="da084" Type="GeneProduct" GroupRef="b9e34"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="85.83333333333331" CenterY="548.75" Width="42.33333333333337" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g47270"/> </DataNode> <DataNode TextLabel="EZ1" GraphId="da9f2" Type="GeneProduct" GroupRef="fccfd"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="46.99999999999999" CenterY="752.4166666666663" Width="40.000000000000014" Height="13.333333333332575" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g16390"/> </DataNode> <DataNode TextLabel="OsMADS56" GraphId="daf56" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <BiopaxRef>cee</BiopaxRef> <Graphics CenterX="472.66666666666646" CenterY="868.0" Width="62.00000000000003" Height="38.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g39130"/> </DataNode> <DataNode TextLabel="bhlh79" GraphId="db132" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="705.0" CenterY="539.25" Width="36.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g47660"/> </DataNode> <DataNode TextLabel="bZIP72" GraphId="db6f1" Type="GeneProduct"> <Comment>Retrieved through Gramene/NCBI (August 25, 2010)</Comment> <BiopaxRef>d2b</BiopaxRef> <Graphics CenterX="1240.25" CenterY="1220.206846524261" Width="57.0952380952383" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g28310"/> </DataNode> <DataNode TextLabel="FPF1" GraphId="dceb9" Type="GeneProduct"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="434.0" CenterY="1215.75" Width="63.99999999999997" Height="16.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g70730"/> </DataNode> <DataNode TextLabel="RCN2" GraphId="dd10d" Type="GeneProduct"> <Comment>Retrieved with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="533.2823129251701" CenterY="1150.0051020408168" Width="62.333333333333286" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g32950"/> </DataNode> <DataNode TextLabel="WNK4" GraphId="df03c" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Gramene (August 25, 2010)</Comment> <Graphics CenterX="193.16666666666666" CenterY="494.25" Width="38.333333333333314" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g45130"/> </DataNode> <DataNode TextLabel="CRY2" GraphId="dfd0c" Type="GeneProduct" GroupRef="ab3e5"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="651.0" CenterY="426.75" Width="34.0" Height="22.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g41550"/> </DataNode> <DataNode TextLabel="ELF3a" GraphId="e04af" Type="GeneProduct" GroupRef="b6bfd"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="556.3333333333335" CenterY="414.75000000000034" Width="34.0" Height="12.500000000000007" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g05060"/> </DataNode> <DataNode TextLabel="SPA1" GraphId="e063b" Type="GeneProduct" GroupRef="d55af"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Comment>Arabi blast gives 05g</Comment> <BiopaxRef>d2b</BiopaxRef> <Graphics CenterX="985.6666666666664" CenterY="548.050420168067" Width="59.33333333333342" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g49590"/> </DataNode> <DataNode TextLabel="LEC1A" GraphId="e16e2" Type="GeneProduct" GroupRef="acc58"> <Comment>Retrieved through Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="1347.308123249298" CenterY="542.3256302521008" Width="66.00000000000018" Height="10.96778711484601" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g17480"/> </DataNode> <DataNode TextLabel="UV-DDB" GraphId="e1c5a" Type="GeneProduct"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="684.0" CenterY="183.25" Width="64.00000000000011" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g51480"/> </DataNode> <DataNode TextLabel="CSD2" GraphId="e1f40" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="293.60714285714243" CenterY="705.25" Width="34.78571428571513" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g44770"/> </DataNode> <DataNode TextLabel="FBO10" GraphId="e23cf" Type="GeneProduct" GroupRef="af6ed"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="526.3333333333334" CenterY="491.75" Width="62.000000000000014" Height="18.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g34460"/> </DataNode> <DataNode TextLabel="GA" GraphId="e258c" Type="Metabolite"> <Comment>GA1 catalyzes conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) in gibberellin biosynthesis.</Comment> <Graphics CenterX="1025.0" CenterY="915.0" Width="42.0" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle" ShapeType="RoundedRectangle" Color="336600"/> <Xref Database="ChEBI" ID="CHEBI:28833"/> </DataNode> <DataNode TextLabel="OsMADS22" GraphId="e3421" Type="GeneProduct"> <Comment>Retrieved through NCBI/Gramene</Comment> <Graphics CenterX="500.0" CenterY="948.0" Width="60.00000000000004" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g52340"/> </DataNode> <DataNode TextLabel="ARP6" GraphId="e3995" Type="GeneProduct" GroupRef="b5380"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="204.10714285714243" CenterY="820.7500000000001" Width="33.78571428571513" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g16414"/> </DataNode> <DataNode TextLabel="Actin" GraphId="e3f99" Type="GeneProduct"> <Graphics CenterX="1240.25" CenterY="1324.5489388949868" Width="40.5" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g04280"/> </DataNode> <DataNode TextLabel="TOE1" GraphId="e418e" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <BiopaxRef>d2b</BiopaxRef> <Graphics CenterX="273.0" CenterY="604.25" Width="38.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g03040"/> </DataNode> <DataNode TextLabel="SPY" GraphId="e4240" Type="GeneProduct"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="291.0" CenterY="1215.25" Width="36.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g44510"/> </DataNode> <DataNode TextLabel="VIP4a" GraphId="e4696" Type="GeneProduct" GroupRef="d8585"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="93.30581610543345" CenterY="925.7857142857156" Width="41.3883677891331" Height="12.714285714286234" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g38970"/> </DataNode> <DataNode TextLabel="FY" GraphId="e4906" Type="GeneProduct" GroupRef="b9e34"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="85.83333333333331" CenterY="481.25000000000006" Width="42.33333333333337" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g72220"/> </DataNode> <DataNode TextLabel="OsMADS8" GraphId="e5568" Type="GeneProduct"> <Graphics CenterX="191.5" CenterY="1030.25" Width="55.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g32948"/> </DataNode> <DataNode TextLabel="HAP3I" GraphId="e5fd8" Type="GeneProduct" GroupRef="acc58"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="1347.308123249298" CenterY="469.7051820728295" Width="66.00000000000018" Height="10.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g29970"/> </DataNode> <DataNode TextLabel="NF-YB13" GraphId="e6021" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Comment>Closest to B13</Comment> <Graphics CenterX="1347.308123249298" CenterY="564.0917366946779" Width="66.00000000000018" Height="10.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g29500"/> </DataNode> <DataNode TextLabel="SLR1" GraphId="e60cd" Type="GeneProduct"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="276.8333333333332" CenterY="1133.9166666666674" Width="28.333333333333332" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g49990"/> </DataNode> <DataNode TextLabel="SDG26" GraphId="e6776" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="105.30581610543345" CenterY="744.5357142857138" Width="39.3883677891331" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g34976"/> </DataNode> <DataNode TextLabel="LEC1B" GraphId="e6936" Type="GeneProduct" GroupRef="acc58"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="1347.308123249298" CenterY="499.52591036414583" Width="66.00000000000018" Height="12.94817927170837" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g49370"/> </DataNode> <DataNode TextLabel="SRR1" GraphId="e6fe5" Type="GeneProduct"> <Graphics CenterX="927.9495798319323" CenterY="290.6862745098039" Width="35.71428571428568" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g02690"/> </DataNode> <DataNode TextLabel="Ghd7" GraphId="e76bc" Type="GeneProduct"> <BiopaxRef>d2b</BiopaxRef> <BiopaxRef>cee</BiopaxRef> <Graphics CenterX="548.0" CenterY="786.25" Width="38.0" Height="9.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g06750"/> </DataNode> <DataNode TextLabel="CDF3" GraphId="e87a4" Type="GeneProduct" GroupRef="e80ae"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="419.33333333333326" CenterY="545.6666666666666" Width="39.333333333333485" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g48570"/> </DataNode> <DataNode TextLabel="MAF1" GraphId="e9749" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <BiopaxRef>f22</BiopaxRef> <Graphics CenterX="1350.6666666666665" CenterY="1177.7142857142858" Width="42.857142857143074" Height="15.428571428571466" ZOrder="32768" FontSize="10" Valign="Middle" Color="ff0000"/> <Xref Database="TAIR" ID="AT1G77080"/> </DataNode> <DataNode TextLabel="COP1" GraphId="e9e07" Type="GeneProduct" GroupRef="d55af"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="986.6666666666664" CenterY="577.9166666666667" Width="36.66666666666684" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g53140"/> </DataNode> <DataNode TextLabel="FIO1" GraphId="e9f99" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="485.5" CenterY="643.25" Width="29.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g02880"/> </DataNode> <DataNode TextLabel="JMJ706" GraphId="ea623" Type="GeneProduct"> <Comment>Retrieved through NCBI (August 25, 2010)</Comment> <BiopaxRef>a08</BiopaxRef> <Graphics CenterX="339.8511904761904" CenterY="749.4284788245461" Width="36.29761904761915" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g42690"/> </DataNode> <DataNode TextLabel="PRMT5" GraphId="ebbab" Type="GeneProduct" GroupRef="b9e34"> <Comment>SKB1;Represses FLC by H4R3sme2 histone demethylation of promoter </Comment> <Comment>Retrieved from Gramene (August 25, 2010)</Comment> <Graphics CenterX="85.83333333333331" CenterY="575.75" Width="42.33333333333337" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g04660"/> </DataNode> <DataNode TextLabel="MAF2" GraphId="ec178" Type="GeneProduct"> <Graphics CenterX="1350.6666666666667" CenterY="1192.4166666666663" Width="42.857142857143074" Height="16.83333333333276" ZOrder="32768" FontSize="10" Valign="Middle" Color="ff0000"/> <Xref Database="TAIR" ID="AT5G65050"/> </DataNode> <DataNode TextLabel="Gal1" GraphId="ec3b3" Type="GeneProduct"> <Graphics CenterX="1240.25" CenterY="1307.5489388949868" Width="40.5" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g35110"/> </DataNode> <DataNode TextLabel="MSI1" GraphId="ec650" Type="GeneProduct" GroupRef="fccfd"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="46.99999999999999" CenterY="779.0833333333314" Width="40.000000000000014" Height="13.333333333332575" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g43890"/> </DataNode> <DataNode TextLabel="OsHB1a" GraphId="ec68f" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="79.10714285714266" CenterY="689.5357142857138" Width="39.785714285714675" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g13310"/> </DataNode> <DataNode TextLabel="JMJ703" GraphId="ec921" Type="GeneProduct" GroupRef="fd05f"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010). Paralog of JMJ704. </Comment> <Comment>Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF</Comment> <Graphics CenterX="779.6904761904757" CenterY="866.25" Width="44.619047619048615" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle" Color="ff33cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g10770"/> </DataNode> <DataNode TextLabel="NF-YB3" GraphId="ed076" Type="GeneProduct" GroupRef="acc58"> <Comment>OsNF-YB1 is not the exact ortholog of AtNF-YB1</Comment> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="1347.308123249298" CenterY="459.7051820728295" Width="66.00000000000021" Height="10.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g49780"/> </DataNode> <DataNode TextLabel="OsCO3" GraphId="ed874" Type="GeneProduct"> <Comment>Retrieved through NCBI (August 25, 2010)</Comment> <BiopaxRef>b59</BiopaxRef> <Graphics CenterX="738.5" CenterY="643.75" Width="41.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g06464"/> </DataNode> <DataNode TextLabel="OsABF2" GraphId="ee122" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="1240.25" CenterY="1247.7068465242605" Width="57.0952380952383" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g10880"/> </DataNode> <DataNode TextLabel="OsAREB3" GraphId="ee1b9" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="146.23214285714232" CenterY="1104.5357142857138" Width="53.53571428571536" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g41070"/> </DataNode> <DataNode TextLabel="OsSPL14" GraphId="ee20d" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="414.10714285714266" CenterY="694.5357142857138" Width="51.7857142857149" Height="13.5" ZOrder="32768" FillColor="Transparent" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g39890"/> </DataNode> <DataNode TextLabel="NF-YC13" GraphId="ee955" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="1328.9406162464963" CenterY="719.974089635855" Width="62.13333333333321" Height="10.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g08790"/> </DataNode> <DataNode TextLabel="VRN5a" GraphId="ef8f6" Type="GeneProduct" GroupRef="fccfd"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="46.99999999999999" CenterY="845.0833333333269" Width="40.000000000000014" Height="13.333333333332575" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g34850"/> </DataNode> <DataNode TextLabel="FBX77" GraphId="ef8fc" Type="GeneProduct"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="270.0" CenterY="1263.25" Width="44.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g10040"/> </DataNode> <DataNode TextLabel="FLX" GraphId="efbe9" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Comment>hits SIP30 in indica</Comment> <Graphics CenterX="153.23214285714226" CenterY="863.0357142857138" Width="25.53571428571547" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g32450"/> </DataNode> <DataNode TextLabel="Hd1" GraphId="f0593" Type="GeneProduct"> <Comment>Ortholog of Arabidopsis thaliana CO.</Comment> <Graphics CenterX="548.8333333333333" CenterY="614.25" Width="65.66666666666663" Height="21.5" ZOrder="32768" FontStyle="Italic" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g16370"/> </DataNode> <DataNode TextLabel="Hd2" GraphId="f070e" Type="GeneProduct"> <Comment>Alternate Gene_ID: Hd2</Comment> <Comment>Retrieved through NCBI</Comment> <BiopaxRef>a60</BiopaxRef> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="442.97478991596637" CenterY="260.0" Width="30.050420168067213" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g49460"/> </DataNode> <DataNode TextLabel="COL5" GraphId="f14c8" Type="GeneProduct"> <Graphics CenterX="960.1666666666666" CenterY="704.25" Width="60.33333333333342" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g42020"/> </DataNode> <DataNode TextLabel="COL9a" GraphId="f1ee8" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/RAPDB (August 25, 2010)</Comment> <Graphics CenterX="539.0" CenterY="566.25" Width="42.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g19444"/> </DataNode> <DataNode TextLabel="PHYB" GraphId="f1fa2" Type="GeneProduct" GroupRef="f6806"> <Comment>Retrieved through Gramene</Comment> <BiopaxRef>f5c</BiopaxRef> <Graphics CenterX="938.333333333333" CenterY="328.0000000000005" Width="40.66666666666694" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g19590"/> </DataNode> <DataNode TextLabel="CDF2a" GraphId="f2589" Type="GeneProduct" GroupRef="e80ae"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="419.33333333333326" CenterY="529.6666666666666" Width="39.333333333333485" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g15900"/> </DataNode> <DataNode TextLabel="GAMyb" GraphId="f2ef9" Type="GeneProduct"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="375.5" CenterY="1192.25" Width="61.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g59660"/> </DataNode> <DataNode TextLabel="GID1" GraphId="f3105" Type="GeneProduct"> <Comment>AFFINITY TO GA4; ASSOCIATED WITH GID1B AND C WHICH ARE FUNCTIONALLY REDUNDANT</Comment> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="970.8333333333335" CenterY="931.75" Width="64.33333333333348" Height="16.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g33730"/> </DataNode> <DataNode TextLabel="OsMADS1" GraphId="f329d" Type="GeneProduct"> <BiopaxRef>b0e</BiopaxRef> <BiopaxRef>a3d</BiopaxRef> <Graphics CenterX="589.25" CenterY="917.25" Width="57.0952380952383" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g11614"/> </DataNode> <DataNode TextLabel="NF-YC1" GraphId="f4761" Type="GeneProduct" GroupRef="acc58"> <Comment>Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="1328.9406162464963" CenterY="655.6043417366934" Width="62.13333333333319" Height="10.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g14669"/> </DataNode> <DataNode TextLabel="PHYA" GraphId="f4d7e" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="652.0" CenterY="373.0" Width="34.0" Height="26.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g51030"/> </DataNode> <DataNode TextLabel="miRNA" GraphId="f4e8b" Type="GeneProduct"> <Graphics CenterX="243.0" CenterY="542.25" Width="36.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="" ID=""/> </DataNode> <DataNode TextLabel="FRL2" GraphId="f56c0" Type="GeneProduct" GroupRef="d5af7"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Graphics CenterX="191.75" CenterY="940.9999999999989" Width="52.499999999999886" Height="12.833333333332575" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g09310"/> </DataNode> <DataNode TextLabel="OsMADS14" GraphId="f5cbb" Type="GeneProduct" GroupRef="f06f3"> <Comment>Retrieved through Gramene</Comment> <BiopaxRef>c57</BiopaxRef> <Graphics CenterX="688.0578231292496" CenterY="1075.9285714285693" Width="65.00000000000009" Height="22.061224489795677" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g54160"/> </DataNode> <DataNode TextLabel="OsMFT1" GraphId="f62a4" Type="GeneProduct"> <Comment>Retrieved through Gramene</Comment> <Graphics CenterX="617.4999999999983" CenterY="1183.25" Width="60.333333333333684" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g30370"/> </DataNode> <DataNode TextLabel="OsPEP" GraphId="f8911" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="85.33333333333334" CenterY="667.25" Width="40.66666666666667" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g41440"/> </DataNode> <DataNode TextLabel="ABH1" GraphId="f8f03" Type="GeneProduct"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="1240.25" CenterY="1259.3391187525817" Width="57.0952380952383" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g22570"/> </DataNode> <DataNode TextLabel="ATL6l" GraphId="f9a85" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="475.3333333333334" CenterY="690.5833333333348" Width="41.333333333333144" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g29310"/> </DataNode> <DataNode TextLabel="GI" GraphId="f9be9" Type="GeneProduct" GroupRef="c5b2c"> <Comment>Required for induction of Ehd1 and Hd3a, but not thru Se5 and Ghd7 repression</Comment> <Comment>Retrieved through NCBI (August 25, 2010)</Comment> <BiopaxRef>d2b</BiopaxRef> <BiopaxRef>cee</BiopaxRef> <Graphics CenterX="500.6666666666672" CenterY="230.74999999999997" Width="26.0" Height="18.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g08700"/> </DataNode> <DataNode TextLabel="bhlh102" GraphId="fa81a" Type="GeneProduct"> <Comment>Retrieved through NCBI/Gramene</Comment> <Graphics CenterX="835.6666666666667" CenterY="288.75" Width="67.33333333333329" Height="18.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g41650"/> </DataNode> <DataNode TextLabel="PHYC" GraphId="fad2d" Type="GeneProduct"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="46.16666666666673" CenterY="723.916666666668" Width="35.66666666666654" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g54084"/> </DataNode> <DataNode TextLabel="FL" GraphId="fbba4" Type="GeneProduct"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="442.1666666666667" CenterY="1112.423469387755" Width="22.33333333333337" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g51000"/> </DataNode> <DataNode TextLabel="SPA2" GraphId="fbc03" Type="GeneProduct" GroupRef="d55af"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)</Comment> <Comment>Arabi blast gives 01g</Comment> <Graphics CenterX="985.6666666666664" CenterY="563.6666666666666" Width="59.333333333333485" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g52640"/> </DataNode> <DataNode TextLabel="Hd1" GraphId="fc048" Type="GeneProduct" GroupRef="b5176"> <Comment>Ortholog of Arabidopsis thaliana CO.</Comment> <BiopaxRef>cf4</BiopaxRef> <Graphics CenterX="824.5" CenterY="582.5" Width="61.0" Height="39.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g16370"/> </DataNode> <DataNode TextLabel="RCN1" GraphId="fcb0b" Type="GeneProduct"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <Graphics CenterX="484.08333333333326" CenterY="1183.25" Width="45.166666666666885" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g05470"/> </DataNode> <DataNode TextLabel="GF14c" GraphId="fcfc8" Type="GeneProduct" GroupRef="d5b40"> <Comment>Retrieved through Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <BiopaxRef>dcf</BiopaxRef> <Graphics CenterX="667.2321428571423" CenterY="655.9642857142844" Width="39.53571428571536" Height="11.785714285713766" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g33370"/> </DataNode> <DataNode TextLabel="FCA" GraphId="fd033" Type="GeneProduct" GroupRef="b9e34"> <Comment>Retrieved with Gramene (August 25, 2010)</Comment> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="85.83333333333331" CenterY="562.25" Width="42.33333333333337" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g03610"/> </DataNode> <DataNode TextLabel="SDG25" GraphId="fdae4" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)</Comment> <Graphics CenterX="227.85714285714243" CenterY="739.25" Width="40.28571428571513" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g41900"/> </DataNode> <DataNode TextLabel="OsCDF1" GraphId="fe6a4" Type="GeneProduct" GroupRef="e80ae"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <BiopaxRef>d2b</BiopaxRef> <Graphics CenterX="419.33333333333326" CenterY="513.6666666666666" Width="39.333333333333485" Height="16.0" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g07360"/> </DataNode> <DataNode TextLabel="miRNA" GraphId="febde" Type="GeneProduct"> <Graphics CenterX="757.204081632653" CenterY="1009.25" Width="36.0" Height="13.5" ZOrder="32768" FontSize="10" Valign="Middle"/> <Xref Database="" ID=""/> </DataNode> <DataNode TextLabel="?" GraphId="ffcf7" Type="GeneProduct"> <Comment>No FLC ortholog. FLC/MAF group of MADS box genes likely evolved after dicot/monocot divergence.</Comment> <BiopaxRef>d2b</BiopaxRef> <BiopaxRef>d09</BiopaxRef> <Graphics CenterX="170.0" CenterY="715.75" Width="34.0" Height="24.5" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="ff0033"/> <Xref Database="" ID=""/> </DataNode> <DataNode TextLabel="OsMADS15" GraphId="ecadd" Type="GeneProduct" GroupRef="f06f3"> <Comment>Retrieved through Gramene</Comment> <BiopaxRef>f20</BiopaxRef> <BiopaxRef>ae3</BiopaxRef> <BiopaxRef>bc1</BiopaxRef> <BiopaxRef>cdc</BiopaxRef> <Graphics CenterX="688.0578231292496" CenterY="1100.0816326530578" Width="65.00000000000009" Height="22.061224489795677" ZOrder="32769" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g01820"/> </DataNode> <DataNode TextLabel="Hd3a" GraphId="c99aa" Type="GeneProduct" GroupRef="e5339"> <Comment>Florigen</Comment> <Comment/> <Graphics CenterX="872.5" CenterY="1132.75" Width="51.0" Height="13.5" ZOrder="32770" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g06320"/> </DataNode> <DataNode TextLabel="FD1" GraphId="d5155" Type="GeneProduct" GroupRef="e5339"> <Comment>Binds to promoter of MADS15 to activate transcription.</Comment> <Comment/> <Graphics CenterX="809.5" CenterY="1157.75" Width="51.0" Height="13.5" ZOrder="32771" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g36910"/> </DataNode> <DataNode TextLabel="GF14c" GraphId="e9e23" Type="GeneProduct" GroupRef="e5339"> <Comment>Bridges Hd3a and FD1.</Comment> <Comment/> <Graphics CenterX="870.5" CenterY="1157.75" Width="51.0" Height="13.5" ZOrder="32772" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g33370"/> </DataNode> <DataNode TextLabel="Hd3a" GraphId="b1fac" Type="GeneProduct"> <Comment>Ortholog of Arabidopsis thaliana FT. Paralogs FTL1 and RFT1 orthologs of AtTSF.</Comment> <BiopaxRef>cf4</BiopaxRef> <BiopaxRef>cee</BiopaxRef> <BiopaxRef>ba9</BiopaxRef> <BiopaxRef>afc</BiopaxRef> <Graphics CenterX="755.25" CenterY="806.75" Width="81.5" Height="40.5" ZOrder="32778" FontSize="10" Valign="Middle" Color="ff00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g06320"/> </DataNode> <DataNode TextLabel="ZTLa" GraphId="eb9a5" Type="GeneProduct"> <Comment>Alternate Gene_ID: ZTL2</Comment> <Comment>Retrieved through NCBI (August 25, 2010)</Comment> <BiopaxRef>a60</BiopaxRef> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="504.0" CenterY="344.25" Width="38.0" Height="18.5" ZOrder="32784" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g47890"/> </DataNode> <DataNode TextLabel="GI" GraphId="bb29d" Type="GeneProduct"> <Comment>Required for induction of Ehd1 and Hd3a, but not thru Se5 and Ghd7 repression</Comment> <Comment>Retrieved through NCBI (August 25, 2010)</Comment> <BiopaxRef>d2b</BiopaxRef> <BiopaxRef>cee</BiopaxRef> <Graphics CenterX="509.0" CenterY="362.25" Width="26.0" Height="18.5" ZOrder="32785" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g08700"/> </DataNode> <DataNode TextLabel="NF-YB2" GraphId="e6c3c" Type="GeneProduct" GroupRef="acc58"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="1347.2941176470583" CenterY="510.69047619047615" Width="66.58823529411684" Height="11.380952380952415" ZOrder="32790" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g61810"/> </DataNode> <DataNode TextLabel="MAF4" GraphId="d2e51" Type="GeneProduct"> <Comment>Retrieved through Gramene/NCBI (August 25, 2010)</Comment> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="1350.6666666666665" CenterY="1220.8214285714278" Width="42.857142857143074" Height="14.499999999999913" ZOrder="32795" FontSize="10" Valign="Middle" Color="ff0000"/> <Xref Database="TAIR" ID="AT5G65070"/> </DataNode> <DataNode TextLabel="MAF5" GraphId="e3e86" Type="GeneProduct"> <Comment>Retrieved through Gramene/NCBI (August 25, 2010); Annotated with Arabidopsis ortholog; Not found in Oryza</Comment> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="1350.6666666666667" CenterY="1232.9285714285713" Width="42.857142857143074" Height="12.142857142857338" ZOrder="32796" FontSize="10" Valign="Middle" Color="ff0000"/> <Xref Database="TAIR" ID="AT5G65080"/> </DataNode> <DataNode TextLabel="PHYE" GraphId="da482" Type="GeneProduct"> <Comment>Retrieved through NCBI/Gramene (August 25, 2010)</Comment> <BiopaxRef>b99</BiopaxRef> <Graphics CenterX="1350.6666666666665" CenterY="1244.8690476190475" Width="42.857142857143074" Height="11.738095238094967" ZOrder="32800" FontSize="10" Valign="Middle" Color="ff0000"/> <Xref Database="TAIR" ID="AT4G18130"/> </DataNode> <DataNode TextLabel="PIF7" GraphId="d123c" Type="GeneProduct"> <Comment>Retrieved through Gramene/NCBI (August 25, 2010)</Comment> <BiopaxRef>c8f</BiopaxRef> <Graphics CenterX="1350.6666666666667" CenterY="1256.321428571428" Width="42.857142857143074" Height="12.261904761903462" ZOrder="32801" FontSize="10" Valign="Middle" Color="ff0000"/> <Xref Database="TAIR" ID="AT5G61270"/> </DataNode> <DataNode TextLabel="SMZ" GraphId="fa48f" Type="GeneProduct"> <Comment>Retrieved through Gramene/NCBI (August 25, 2010)</Comment> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="1350.6666666666667" CenterY="1268.6785714285702" Width="42.857142857143074" Height="14.499999999999913" ZOrder="32802" FontSize="10" Valign="Middle" Color="ff0000"/> <Xref Database="TAIR" ID="AT3G54990"/> </DataNode> <DataNode TextLabel="SNZ" GraphId="e518c" Type="GeneProduct"> <Comment>Retrieved through Gramene/NCBI (August 25, 2010)</Comment> <BiopaxRef>ec0</BiopaxRef> <Graphics CenterX="1350.6666666666665" CenterY="1282.1190476190475" Width="42.857142857143074" Height="14.238095238094957" ZOrder="32803" FontSize="10" Valign="Middle" Color="ff0000"/> <Xref Database="TAIR" ID="AT2G39250"/> </DataNode> <DataNode TextLabel="U2AF" GraphId="a7571" Type="GeneProduct"> <Graphics CenterX="237.0" CenterY="770.25" Width="28.0" Height="16.0" ZOrder="32804" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g48960"/> </DataNode> <DataNode TextLabel="LTPL112" GraphId="d49f7" Type="GeneProduct"> <Graphics CenterX="122.0" CenterY="778.625" Width="48.0" Height="13.25" ZOrder="32807" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g44310"/> </DataNode> <DataNode TextLabel="CRP" GraphId="e62c3" Type="GeneProduct"> <Comment>Symbol assigned by Mamatha Hanumappa, 16-Nov-2011</Comment> <Graphics CenterX="1240.25" CenterY="1272.8822722283203" Width="40.5" Height="16.0" ZOrder="32808" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g45400"/> </DataNode> <DataNode TextLabel="BZR1" GraphId="fdaac" Type="GeneProduct"> <Graphics CenterX="81.0" CenterY="1015.125" Width="38.0" Height="16.25" ZOrder="32809" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g39220"/> </DataNode> <DataNode TextLabel="POLE1" GraphId="a1190" Type="GeneProduct"> <Graphics CenterX="255.0" CenterY="873.5" Width="36.0" Height="13.0" ZOrder="32810" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g30800"/> </DataNode> <DataNode TextLabel="POLA1" GraphId="f49a1" Type="GeneProduct" GroupRef="fdfb7"> <Graphics CenterX="813.25" CenterY="916.0" Width="39.5" Height="16.0" ZOrder="32811" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g64820"/> </DataNode> <DataNode TextLabel="DPNPase" GraphId="c3558" Type="GeneProduct"> <Graphics CenterX="1240.25" CenterY="1342.2989388949868" Width="47.5" Height="17.0" ZOrder="32812" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g08280"/> </DataNode> <DataNode TextLabel="MYB29 " GraphId="d3a5e" Type="GeneProduct"> <Graphics CenterX="556.25" CenterY="244.25" Width="37.5" Height="13.5" ZOrder="32813" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g01670"/> </DataNode> <DataNode TextLabel="ZOS1-05" GraphId="fb681" Type="GeneProduct"> <Graphics CenterX="1118.25" CenterY="684.0" Width="47.5" Height="12.0" ZOrder="32814" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g14010"/> </DataNode> <DataNode TextLabel="FAS2" GraphId="f6434" Type="GeneProduct"> <Graphics CenterX="863.25" CenterY="1003.0" Width="47.5" Height="16.0" ZOrder="32815" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g01680"/> </DataNode> <DataNode TextLabel="SUS2" GraphId="cb2ae" Type="GeneProduct"> <Graphics CenterX="1116.25" CenterY="723.0" Width="47.5" Height="17.0" ZOrder="32817" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g09450"/> </DataNode> <DataNode TextLabel="SFR6" GraphId="c26c6" Type="GeneProduct"> <Comment>Symbol assigned by Mamatha Hanumappa, 16-Nov-2011</Comment> <Graphics CenterX="1240.25" CenterY="1290.6322722283203" Width="47.5" Height="17.0" ZOrder="32818" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g35560"/> </DataNode> <DataNode TextLabel="PHDfL" GraphId="b6b7d" Type="GeneProduct"> <Comment>Symbol assigned by Mamatha Hanumappa, 16-Nov-2011</Comment> <Graphics CenterX="114.25" CenterY="761.0" Width="40.5" Height="16.0" ZOrder="32820" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g09920"/> </DataNode> <DataNode TextLabel="WNK8" GraphId="c3fd6" Type="GeneProduct"> <Graphics CenterX="1291.6785714285725" CenterY="1342.8227484187967" Width="47.5" Height="16.0" ZOrder="32821" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g02250"/> </DataNode> <DataNode TextLabel="UV-DDB2" GraphId="d6eb8" Type="GeneProduct"> <Graphics CenterX="680.5" CenterY="232.5" Width="45.0" Height="11.0" ZOrder="32824" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g04870"/> </DataNode> <DataNode TextLabel="WNK1" GraphId="a2fb1" Type="GeneProduct"> <Graphics CenterX="559.25" CenterY="170.0" Width="35.5" Height="16.0" ZOrder="32825" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g38530"/> </DataNode> <DataNode TextLabel="DREB1G" GraphId="a87c0" Type="GeneProduct"> <Graphics CenterX="416.5" CenterY="629.5" Width="47.0" Height="13.0" ZOrder="32826" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g45450"/> </DataNode> <DataNode TextLabel="DREB1F" GraphId="b4197" Type="GeneProduct"> <Graphics CenterX="409.25" CenterY="604.0" Width="47.5" Height="16.0" ZOrder="32827" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g73770"/> </DataNode> <DataNode TextLabel="SNF2L" GraphId="c0151" Type="GeneProduct" GroupRef="a7c7f"> <Comment>Partially redundant with autonomous pathway; acts through photoperiod pathway to suppress the floral promoters CO, FT and SOC1 and the floral repressor FLC. Symbol assigned by Mamatha Hanumappa, 16-Nov-2011</Comment> <BiopaxRef>f0c</BiopaxRef> <Graphics CenterX="145.18466761170617" CenterY="274.42677070828415" Width="30.857142857142776" Height="18.836734693878896" ZOrder="32919" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g02290"/> </DataNode> <DataNode TextLabel="Hd1" GraphId="acf5d" Type="GeneProduct" GroupRef="a7c7f"> <Graphics CenterX="122.31622336167534" CenterY="318.21158463385353" Width="25.13225915900199" Height="12.585234093637915" ZOrder="32920" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g16370"/> </DataNode> <DataNode TextLabel="OsMADS50" GraphId="f7050" Type="GeneProduct" GroupRef="a7c7f"> <Graphics CenterX="168.73098926803786" CenterY="319.9414765906359" Width="52.05062650594092" Height="17.528811524610408" ZOrder="32922" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g03070"/> </DataNode> <DataNode TextLabel="Hd3a" GraphId="dd088" Type="GeneProduct" GroupRef="a7c7f"> <Graphics CenterX="142.36774084099784" CenterY="337.53751500600293" Width="24.59183673469383" Height="10.010204081634583" ZOrder="32923" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g06320"/> </DataNode> <DataNode TextLabel="DH1" GraphId="f3133" Type="GeneProduct"> <Comment>Retrieved through NCBI (August 25, 2010); Could not find identifier, but found lit reference (see associated bibliography recored)</Comment> <Comment>Type your comment here</Comment> <BiopaxRef>c9b</BiopaxRef> <Graphics CenterX="354.8215211754537" CenterY="780.9358254105448" Width="26.999999999999886" Height="13.5" ZOrder="32929" FontSize="10" Valign="Middle"/> <Xref Database="" ID=""/> </DataNode> <DataNode TextLabel="MADS47" GraphId="f6961" Type="GeneProduct"> <Comment>Retrieved through NCBI (August 25, 2010)</Comment> <Graphics CenterX="278.04761904761915" CenterY="764.25" Width="48.0952380952383" Height="19.5" ZOrder="32930" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g08754"/> </DataNode> <DataNode TextLabel="MADS72" GraphId="d7a77" Type="GeneProduct"> <Graphics CenterX="337.75" CenterY="1129.0" Width="47.5" Height="16.0" ZOrder="32934" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g14850"/> </DataNode> <DataNode TextLabel="MADS61" GraphId="ab1bb" Type="GeneProduct"> <Graphics CenterX="332.75" CenterY="1102.0" Width="47.5" Height="16.0" ZOrder="32935" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g38770"/> </DataNode> <DataNode TextLabel="SNB" GraphId="b92e1" Type="GeneProduct"> <Comment/> <BiopaxRef>e39</BiopaxRef> <Graphics CenterX="273.0" CenterY="616.5" Width="38.0" Height="11.0" ZOrder="32941" FontSize="10" Valign="Middle" Color="ff00ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g13170"/> </DataNode> <DataNode TextLabel="LRK1" GraphId="c1876" Type="GeneProduct"> <Graphics CenterX="1240.75" CenterY="1357.7989388949868" Width="47.5" Height="17.0" ZOrder="32943" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g03240"/> </DataNode> <DataNode TextLabel="POLE1" GraphId="e870f" Type="GeneProduct" GroupRef="fdfb7"> <Graphics CenterX="814.25" CenterY="959.0" Width="39.5" Height="16.0" ZOrder="32944" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g30800"/> </DataNode> <DataNode TextLabel="ES43b" GraphId="bce2c" Type="GeneProduct" GroupRef="fb2c0"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010). Paralog of JMJ704.</Comment> <Comment>Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF</Comment> <Graphics CenterX="956.6071428571424" CenterY="750.75" Width="44.619047619048615" Height="13.5" ZOrder="32948" FontSize="10" Valign="Middle" Color="ff33cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g32620"/> </DataNode> <DataNode TextLabel="ES43a" GraphId="d400c" Type="GeneProduct" GroupRef="e23cd"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="875.3095238095243" CenterY="940.75" Width="44.619047619048615" Height="13.5" ZOrder="32949" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g21770"/> </DataNode> <DataNode TextLabel="ES43b" GraphId="d4559" Type="GeneProduct" GroupRef="e23cd"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010). Paralog of JMJ704.</Comment> <Comment>Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF</Comment> <Graphics CenterX="875.3095238095243" CenterY="952.75" Width="44.619047619048615" Height="13.5" ZOrder="32950" FontSize="10" Valign="Middle" Color="ff33cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g32620"/> </DataNode> <DataNode TextLabel="EZ1" GraphId="e2a44" Type="GeneProduct"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Graphics CenterX="831.5" CenterY="878.5" Width="27.0" Height="13.0" ZOrder="32951" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g16390"/> </DataNode> <DataNode TextLabel="ZOS9-03" GraphId="af9a0" Type="GeneProduct" GroupRef="a16bf"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010). Paralog of JMJ704.</Comment> <Comment>Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF</Comment> <Graphics CenterX="235.3095238095243" CenterY="646.75" Width="44.619047619048615" Height="13.5" ZOrder="32953" FontSize="10" Valign="Middle" Color="ff33cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g13630"/> </DataNode> <DataNode TextLabel="EMF" GraphId="cf778" Type="GeneProduct" GroupRef="bc8b8"> <Comment>Retrieved through Gramene (August 25, 2010)</Comment> <Graphics CenterX="867.5" CenterY="890.75" Width="29.0" Height="13.5" ZOrder="32959" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g08034"/> </DataNode> <DataNode TextLabel="ZOS9-03" GraphId="e6b31" Type="GeneProduct" GroupRef="bc8b8"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010). Paralog of JMJ704.</Comment> <Comment>Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF</Comment> <Graphics CenterX="875.3095238095243" CenterY="904.4642857142862" Width="44.619047619048615" Height="13.5" ZOrder="32960" FontSize="10" Valign="Middle" Color="ff33cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g13630"/> </DataNode> <DataNode TextLabel="MYB" GraphId="a926d" Type="GeneProduct"> <Comment>Possible Arabidopsis WER ortholog</Comment> <Graphics CenterX="1241.75" CenterY="1373.7989388949868" Width="47.5" Height="17.0" ZOrder="32965" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g43550"/> </DataNode> <DataNode TextLabel="Hd2" GraphId="bca43" Type="GeneProduct"> <Comment>Alternate Gene_ID: Hd2</Comment> <Comment>Retrieved through NCBI</Comment> <Graphics CenterX="560.0252100840336" CenterY="193.0" Width="30.050420168067213" Height="16.0" ZOrder="32966" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g49460"/> </DataNode> <DataNode TextLabel="CKA2" GraphId="eab00" Type="GeneProduct" GroupRef="fb134"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Comment>LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab</Comment> <Graphics CenterX="207.23214285714232" CenterY="100.75" Width="39.53571428571536" Height="13.5" ZOrder="32968" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g10940"/> </DataNode> <DataNode TextLabel="HD6" GraphId="ea878" Type="GeneProduct" GroupRef="fb134"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Comment>LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab</Comment> <Graphics CenterX="207.23214285714232" CenterY="113.5" Width="39.53571428571536" Height="15.0" ZOrder="32969" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g02350"/> </DataNode> <DataNode TextLabel="CK2alphaCp" GraphId="be9b4" Type="GeneProduct" GroupRef="fb134"> <Comment>Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)</Comment> <Comment>LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab</Comment> <Graphics CenterX="217.23214285714232" CenterY="123.75" Width="59.53571428571536" Height="13.5" ZOrder="32970" FontSize="10" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g55490"/> </DataNode> <DataNode TextLabel="WNK8a" GraphId="ea0d6" Type="GeneProduct"> <Comment>Assigned by Mamatha Hanumappa, 20-Nov-2011</Comment> <Graphics CenterX="1291.6785714285725" CenterY="1358.9656055616535" Width="47.5" Height="16.0" ZOrder="32971" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g02305"/> </DataNode> <DataNode TextLabel="WNK8b" GraphId="c1ab4" Type="GeneProduct"> <Comment>Assigned by Mamatha Hanumappa, 20-Nov-2011</Comment> <Graphics CenterX="1291.6785714285725" CenterY="1373.251319847368" Width="47.5" Height="16.0" ZOrder="32972" FontSize="10" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g02300"/> </DataNode> <Interaction GraphId="id4ab7f394"> <Graphics ZOrder="-26" LineThickness="1.0"> <Point X="796.0" Y="806.75" GraphRef="b1fac" RelX="1.0" RelY="0.0"/> <Point X="859.0" Y="800.625" GraphRef="a9b9e" RelX="-1.0" RelY="0.5"/> </Graphics> <Xref Database="" ID=""/> </Interaction> <Interaction GraphId="a529e" GroupRef="cb730"> <Graphics ZOrder="12288" LineThickness="1.0"> <Point X="1231.6666666666647" Y="789.6666666666631"/> <Point X="1309.6666666666647" Y="788.6666666666631" ArrowHead="Arrow"/> </Graphics> <Xref Database="" ID=""/> </Interaction> <Interaction GraphId="b850d" GroupRef="cb730"> <Graphics ZOrder="12288" LineStyle="Broken" LineThickness="1.0" Color="0000ff"> <Point 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