Seed development (template) (Oryza sativa)

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<?xml version="1.0" encoding="UTF-8"?> <Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Seed development (template)" Data-Source="Rice Ensembl" Version="1" Author="Mamatha Hanumappa, Denise Nemeth, Pankaj Jaiswal" Maintainer="Mamatha Hanumappa; Jaiswal Lab" Email="hanumapm@science.oregonstate.edu" Last-Modified="23-May2012" Organism="Oryza sativa"> <Comment Source="WikiPathways-description">Rice reference network (Supplemental File S1_input.gpml) that is used as template for subsequent projections with Pathway GeneSWAPPER as described in the manuscript. The public version is available as WP2199.</Comment> <Comment Source="WikiPathways-category">Physiological Process</Comment> <Comment Source="WikiPathways-category">Molecular Function</Comment> <Comment Source="WikiPathways-category">Metabolic Process</Comment> <Comment Source="WikiPathways-category">Cellular Process</Comment> <Graphics BoardWidth="5678.000000000008" BoardHeight="4139.221466364335"/> <DataNode TextLabel="psbC " GraphId="e35e9" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2830.3333333333326" CenterY="1192.6394431024903" Width="122.00000000000065" Height="27.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="00cc00"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g24632"/> </DataNode> <DataNode TextLabel="HSP70" GraphId="d04ca" Type="GeneProduct" GroupRef="ed3dc"> <BiopaxRef>e3b</BiopaxRef> <BiopaxRef>bc8</BiopaxRef> <BiopaxRef>b22</BiopaxRef> <Graphics CenterX="1837.0833333333214" CenterY="2163.833333333325" 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Ensembl Gene" ID="LOC_Os07g42300"/> </DataNode> <DataNode TextLabel="DUF630" GraphId="b92eb" Type="GeneProduct"> <Comment>Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3932.783256282289" CenterY="1637.3770876731994" Width="73.11077389985972" Height="25.354577642894583" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g41310"/> </DataNode> <DataNode TextLabel="DOF ZF" GraphId="b531d" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3594.6666666666583" CenterY="1270.6666666666704" Width="89.33333333333329" Height="26.666666666666693" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g49440"/> </DataNode> <DataNode TextLabel="HOX6" GraphId="e19d1" Type="GeneProduct"> <Comment>Cooper et al. 2003 called this leucine zipper and misnamed HOX 22 as HOX 6 (22834)</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2634.949479652065" CenterY="654.6666666666624" Width="63.93437402919982" Height="20.33333333332348" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g35910"/> </DataNode> <DataNode TextLabel="EF-1-g" GraphId="e5a27" Type="GeneProduct"> <Comment>eEF-1G</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3498.333333333331" CenterY="2013.333333333334" Width="117.34554036458333" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g12800"/> </DataNode> <DataNode TextLabel="Phosphotyrosine" GraphId="b35f4" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3952.3333333333335" CenterY="1931.0000000000023" Width="146.66666666666458" Height="29.99999999999988" ZOrder="32768" FontWeight="Bold" FontSize="14" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g44320"/> </DataNode> <DataNode TextLabel="PROLM28" GraphId="f957f" Type="GeneProduct" GroupRef="b4e5e"> <Comment>Prolamin precursor, protein also called PPROL 17 </Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2028.6666666666579" CenterY="1599.6666666666713" Width="100.0" Height="22.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g16890"/> </DataNode> <DataNode TextLabel="CML18" GraphId="f6bad" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3018.1666666666706" CenterY="1932.775510204083" Width="77.0" Height="21.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g13580"/> </DataNode> <DataNode TextLabel="Wx1" GraphId="e72eb" Type="GeneProduct"> <Comment>30% less pre-mRNA in du1 mutant line Granule-bound starch synthase expression diminished during grain filling at high temperatures</Comment> <BiopaxRef>e3b</BiopaxRef> <BiopaxRef>ff5</BiopaxRef> <BiopaxRef>ea9</BiopaxRef> <BiopaxRef>b05</BiopaxRef> <BiopaxRef>d0b</BiopaxRef> <Graphics CenterX="3298.6666666666633" CenterY="905.9999999999998" Width="80.0" Height="28.00000000000026" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g04200"/> </DataNode> <DataNode TextLabel="RPK-TMK1 precursor" GraphId="fad88" Type="GeneProduct" GroupRef="fd4e2"> <Comment>receptor protein kinase TMK1 precursor</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1523.7499999999943" CenterY="2705.8333333334213" Width="236.6250000000091" Height="35.33333333333621" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g58910"/> </DataNode> <DataNode TextLabel="HAD-like" GraphId="a7b26" Type="GeneProduct" GroupRef="fd4e2"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1523.7499999999943" CenterY="2530.324074074142" 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GraphId="a1544" Type="GeneProduct" GroupRef="b4e5e"> <Comment>Helix-loop-helix TF </Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2021.6666666666579" CenterY="1681.6666666666704" Width="100.0" Height="22.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g04390"/> </DataNode> <DataNode TextLabel="Importin alpha-1a" GraphId="eb39c" Type="GeneProduct" GroupRef="add74"> <Comment>NLS RECEPTOR </Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3109.333333333332" CenterY="1045.6666666666674" Width="137.33333333333383" Height="35.3333333333361" ZOrder="32768" FontWeight="Bold" FontSize="14" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g14950"/> </DataNode> <DataNode TextLabel="MADS 6" GraphId="c105b" Type="GeneProduct"> <Comment>Also called MFO1</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1778.333333333334" CenterY="1280.262583585809" Width="80.0" Height="20.0" ZOrder="32768" 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CenterX="3483.865830636456" CenterY="1583.1666666667013" Width="137.33333333333394" Height="35.33333333333621" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g02240"/> </DataNode> <DataNode TextLabel="LOC_Os06g14190" GraphId="de419" Type="GeneProduct" GroupRef="afee5"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3439.4999999999977" CenterY="2295.0000000000005" Width="188.33333333333303" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g14190"/> </DataNode> <DataNode TextLabel="C3H1" GraphId="d7e9b" Type="GeneProduct"> <Comment>Zinc finger CCCH domain-containing protein Glutaredoxin-related </Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3300.748792270536" CenterY="2192.3333333333203" Width="74.83091787438727" Height="27.333333333333826" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g07930"/> </DataNode> <DataNode TextLabel="Anthranilate Phosphoribosyltransferase" GraphId="ec1b9" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3078.6103059583065" CenterY="1830.666666666677" Width="227.22061191661305" Height="26.000000000000455" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="ff0033"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g03450"/> </DataNode> <DataNode TextLabel="Male sterility protein" GraphId="c827b" Type="GeneProduct" GroupRef="f14fb"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4664.093017578124" CenterY="3227.905139833718" Width="222.66666666666674" Height="35.333333333336135" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g43040"/> </DataNode> <DataNode TextLabel="PPR bZIP" GraphId="de08a" Type="GeneProduct"> <Comment>Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4409.575070323485" CenterY="1353.2577355836843" Width="80.99050632911974" Height="27.661744022504976" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g40320"/> </DataNode> <DataNode TextLabel="LOC_Os09g38090" GraphId="a4a0e" Type="GeneProduct" GroupRef="fd4e2"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1523.7499999999943" CenterY="2670.5000000000837" Width="236.6250000000091" Height="35.33333333333621" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g38090"/> </DataNode> <DataNode TextLabel="DAD1" GraphId="dc951" Type="GeneProduct"> <Comment>Defender against cell death 1</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4839.7134520850705" CenterY="1024.5" Width="87.09911552043498" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="ff0033"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g32550"/> </DataNode> <DataNode TextLabel="OSE2" GraphId="ab78d" Type="GeneProduct"> <Comment>bZIP transcription factor domain containing protein</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3588.9166666666697" CenterY="969.1666666666712" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g64730"/> </DataNode> <DataNode TextLabel="TPR-PK" GraphId="afe6b" Type="GeneProduct" GroupRef="fb6d8"> <Comment>Putative protein kinase </Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3630.177928904595" CenterY="2232.333333333294" Width="153.6891911425273" Height="25.333333333333485" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g61010"/> </DataNode> <DataNode TextLabel="SAP11" GraphId="c516c" Type="GeneProduct"> <Comment>Also called ZFP60</Comment> 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TextLabel="Dynamin" GraphId="a05f1" Type="GeneProduct" GroupRef="c1f9f"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="5280.999999999999" CenterY="1166.2499999999973" Width="155.83333333334485" Height="21.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="00cc00"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g13820 "/> </DataNode> <DataNode TextLabel="PP2A1" GraphId="bacb2" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3367.7221651250256" CenterY="2087.0000000000027" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g37660 "/> </DataNode> <DataNode TextLabel="PRP1" GraphId="ad7cd" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1182.0" CenterY="2221.66666666667" Width="68.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g13940 "/> </DataNode> <DataNode TextLabel="Ser/thr PK" GraphId="b3cd4" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3470.8051529790646" CenterY="2117.6666666666747" Width="118.66666666666671" Height="23.333333333332348" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g43290 "/> </DataNode> <DataNode TextLabel="MADS 5" GraphId="f1468" Type="GeneProduct" GroupRef="abb9a"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2240.000000000001" CenterY="1273.000000000002" Width="137.3333333333338" Height="35.333333333336135" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g06750"/> </DataNode> <DataNode TextLabel="Keto acyl CoA thiolase" GraphId="a8cda" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3112.5000000000023" CenterY="1980.999999999996" Width="129.0" Height="18.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="0066ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g57260"/> </DataNode> <DataNode TextLabel="Ring ZF" GraphId="da8d3" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1048.6666666666697" CenterY="2251.0000000000014" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g48050"/> </DataNode> <DataNode TextLabel="MADS 14" GraphId="e84e9" Type="GeneProduct"> <Comment>Also called AGL10, RAP1B</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1722.9999999999993" CenterY="1385.0000000000039" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g54160"/> </DataNode> <DataNode TextLabel="bip110" GraphId="e5e18" Type="GeneProduct" GroupRef="fd4e2"> <Comment>Putative ubiquitin-specific protease 23, BRI1-KD interacting protein 110</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1523.7499999999943" CenterY="2494.18558776174" Width="236.6250000000091" Height="35.33333333333621" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g08530 "/> </DataNode> <DataNode TextLabel="OsPRP1" GraphId="d5554" Type="GeneProduct"> <Comment>Proline rich protein</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3504.333333333323" CenterY="1778.3333333333392" Width="112.00000000000234" Height="24.66666666666677" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g05970 "/> </DataNode> <DataNode TextLabel="RIR 1b" GraphId="f82d9" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3181.3333333333167" CenterY="1623.9999999999968" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="ff0033"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g48260"/> </DataNode> <DataNode TextLabel="Gal1" GraphId="d3083" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3385.853727144861" CenterY="1709.6666666666708" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g35110"/> </DataNode> <DataNode TextLabel="MADS 15" GraphId="db84c" Type="GeneProduct" GroupRef="b8f6a"> <Comment>Also called RAP1A</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1875.3333333333333" CenterY="1129.000000000001" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g01820"/> </DataNode> <DataNode TextLabel="Plasma membrane ATPase" GraphId="d6213" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4841.007583170254" CenterY="1092.5" Width="157.51516634050893" Height="22.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g56160"/> </DataNode> <DataNode TextLabel="CCT/B-box zinc finger " GraphId="c4b2a" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4419.780992565803" CenterY="1176.2948676245526" Width="122.4633313240906" Height="32.782979237532345" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g49230"/> </DataNode> <DataNode TextLabel="RPS20" GraphId="b2f07" Type="GeneProduct"> <Comment>P35686 </Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2648.6666666666697" CenterY="1444.3333333333321" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g04290"/> </DataNode> <DataNode TextLabel="MADS 8" GraphId="d69fb" Type="GeneProduct" GroupRef="ce68c"> <Comment>Also called MADS 24</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1729.3333333333346" CenterY="973.333333333333" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g32948"/> </DataNode> <DataNode TextLabel="AP-1gamma-1" GraphId="df40e" Type="GeneProduct" GroupRef="fd4e2"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1524.9074074074017" CenterY="2354.8148148148593" Width="236.6250000000091" Height="35.33333333333621" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g07090"/> </DataNode> <DataNode TextLabel="APRL3" GraphId="eb5c1" Type="GeneProduct"> <Comment>Disulfide Isomerase </Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3660.9999999999995" CenterY="1801.3333333333387" Width="110.66666666666788" Height="26.000000000000455" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g51850 "/> </DataNode> <DataNode TextLabel="EXPB2" GraphId="f420a" Type="GeneProduct" GroupRef="a7bc9"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4840.954272186299" CenterY="926.6170886075952" Width="101.49511244878141" Height="33.26230661040768" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g40710"/> </DataNode> <DataNode TextLabel="NADPH G-3-P dh" GraphId="fe344" Type="GeneProduct" GroupRef="f2668"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3481.7083333333276" CenterY="1365.1666666666845" Width="137.33333333333394" Height="35.33333333333621" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="00cc00"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g34210"/> </DataNode> <DataNode TextLabel="SGT1" GraphId="d3295" Type="GeneProduct" GroupRef="ed3dc"> <Comment>Responds to salicylic acid in chemically induced biotic response</Comment> <BiopaxRef>bc8</BiopaxRef> <BiopaxRef>b70</BiopaxRef> <BiopaxRef>c16</BiopaxRef> <BiopaxRef>b22</BiopaxRef> <BiopaxRef>a71</BiopaxRef> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1523.3333333333364" CenterY="2219.500000000001" Width="80.0" Height="27.666666666665513" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g43540 "/> </DataNode> <DataNode TextLabel="LOC_Os04g53350" GraphId="ff6e3" Type="GeneProduct" GroupRef="f405f"> <Comment>Cooper 31122 ID</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2563.666666666679" CenterY="1630.0000000000036" Width="128.0283203125" Height="28.000000000004775" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g53350"/> </DataNode> <DataNode TextLabel="Ubiquitin proteinase" GraphId="baa68" Type="GeneProduct"> <Comment>ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3367.0886075949365" CenterY="1661.7194092827017" Width="135.02109704641407" Height="26.77215189873192" ZOrder="32768" FontWeight="Bold" FontSize="14" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g43760 "/> </DataNode> <DataNode TextLabel="PHT4;3" GraphId="b964b" Type="GeneProduct" GroupRef="a7bc9"> <Comment>Na+ dep inorg phosphate cotransporter </Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4837.682716179352" CenterY="966.888537271449" Width="93.97352685367291" Height="35.28059071729956" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g63290"/> </DataNode> <DataNode TextLabel="LOC_Os03g55130 " GraphId="f2afb" Type="GeneProduct" GroupRef="afee5"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3439.4999999999977" CenterY="2255.0000000000005" Width="188.33333333333303" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g55130 "/> </DataNode> <DataNode TextLabel="PIP5K" GraphId="ed321" Type="GeneProduct" GroupRef="c1f9f"> <Comment>Putative phosphatidylinositol-4-phosphate 5-kinase</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="5280.999999999999" CenterY="1026.2499999999973" Width="155.83333333334485" Height="21.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="00cc00"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g57660"/> </DataNode> <DataNode TextLabel="MAPK2" GraphId="ab8b5" Type="GeneProduct"> <Comment>UniProt:MAPK2, BIMK1, MAP3, MAPK5, MPK3, MSRMK2</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2963.9999999999905" CenterY="2025.6666666666715" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g05480"/> </DataNode> <DataNode TextLabel="Mal d 1-AP" GraphId="d32e4" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2648.5" CenterY="978.333333333333" Width="127.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g56470"/> </DataNode> <DataNode TextLabel="VP1" GraphId="d4069" Type="GeneProduct" GroupRef="c5b01"> <Comment>Interaction with Wsi18 and Lea3 by orthology to H vulgare ABA-related Seed dormancy Interaction with Wsi18 and Lea3 by orthology to H vulgare</Comment> <BiopaxRef>e3b</BiopaxRef> <BiopaxRef>e1c</BiopaxRef> <BiopaxRef>b08</BiopaxRef> <Graphics CenterX="4611.249999999994" CenterY="1144.5833333333335" Width="80.0" Height="33.500000000000334" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g68370"/> </DataNode> <DataNode TextLabel="HOX 22" GraphId="a00cd" Type="GeneProduct"> <Comment>In Cooper et al. 2003 protein sequence provided matches HOX 22, however it was named HOX6 (AF145730)</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1721.3333333333335" CenterY="1473.2036751551152" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g45810"/> </DataNode> <DataNode TextLabel="NAC075" GraphId="cbc01" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2802.66666666665" CenterY="1944.499999999999" Width="80.0" Height="27.666666666666874" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g09550"/> </DataNode> <DataNode TextLabel="LOC_Os12g37570" GraphId="fb9ed" Type="GeneProduct"> <Comment>Protein Kinase-UniProt ID</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4063.9943741209568" CenterY="1620.9556962025317" Width="142.0534458509146" Height="23.911392405063395" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g37570"/> </DataNode> <DataNode TextLabel=" EPSPS1" GraphId="af01e" Type="GeneProduct" GroupRef="c1f9f"> <Comment>5-Enolpyruvylshikimate-3-phosphate synthase 1</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="5280.999999999999" CenterY="1080.2499999999973" Width="155.83333333334485" Height="21.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="00cc00"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g04280"/> </DataNode> <DataNode TextLabel="GLUB4" GraphId="c1188" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <BiopaxRef>b19</BiopaxRef> <Graphics CenterX="3181.9166666666542" CenterY="1502.6666666666667" Width="84.0000000000008" Height="26.66666666666768" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g16830"/> </DataNode> <DataNode TextLabel="LOC_Os05g50190" GraphId="f77a6" Type="GeneProduct"> <Comment>Protein Kinase-UniProt ID</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2891.5751445086707" CenterY="1981.1948470209359" Width="106.84971098265854" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g50190"/> </DataNode> <DataNode TextLabel="DIP1" GraphId="fbb8b" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2957.3333333333408" CenterY="1010.2755102040842" Width="134.66666666666669" Height="38.00000000000011" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="3333ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g34070"/> </DataNode> <DataNode TextLabel="Pyrrolidone-Carboxylpeptidase" GraphId="a3b18" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4073.8396624472575" CenterY="1191.4472573839666" Width="229.25457102672294" Height="31.33333333333349" ZOrder="32768" FontWeight="Bold" FontSize="14" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g25270 "/> </DataNode> <DataNode TextLabel="GB2" GraphId="a20fd" Type="GeneProduct" GroupRef="b4e5e"> <Comment>Globulin 2</Comment> <BiopaxRef>e3b</BiopaxRef> <BiopaxRef>a55</BiopaxRef> <BiopaxRef>b19</BiopaxRef> <Graphics CenterX="2021.6666666666579" CenterY="1757.6666666666686" Width="100.0" Height="22.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g57960"/> </DataNode> <DataNode TextLabel="Ser/thr PK" GraphId="ac205" Type="GeneProduct" GroupRef="aca2c"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3383.333333333332" CenterY="1187.166666666668" Width="109.0" Height="23.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="ff0033"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g04880"/> </DataNode> <DataNode TextLabel="CRINKLY4" GraphId="fffe3" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3117.3333333333267" CenterY="1549.333333333333" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g28710"/> </DataNode> <DataNode TextLabel="LOC_Os06g39906 " GraphId="a2308" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4832.278305203938" CenterY="1203.0481715893109" Width="139.94338959212365" Height="27.096343178621744" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g39906 "/> </DataNode> <DataNode TextLabel="AREB" GraphId="c4394" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4804.132829977624" CenterY="1350.833333333333" Width="96.4323266219327" Height="27.333333333332575" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g41070"/> </DataNode> <DataNode TextLabel="MADS 1" GraphId="ce312" Type="GeneProduct" GroupRef="abb9a"> <Comment>Also called LHS1</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2240.000000000001" CenterY="1202.499999999999" Width="137.3333333333338" Height="36.999999999997726" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g11614"/> </DataNode> <DataNode TextLabel="LOC_Os03g07360" GraphId="c5a0d" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3053.571729957806" CenterY="1394.1666666666656" Width="129.14345991561186" Height="29.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g07360"/> </DataNode> <DataNode TextLabel="LOC_Os04g57020" GraphId="ff2ee" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2089.0000000000005" CenterY="949.666666666667" Width="109.99999999999909" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g57020"/> </DataNode> <DataNode TextLabel="MADS 13" GraphId="c3047" Type="GeneProduct"> <Comment>Also called MAF1</Comment> 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FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g50240"/> </DataNode> <DataNode TextLabel="HMG1" GraphId="c04ed" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3496.83333333332" CenterY="1681.0833333333348" Width="75.99999999999997" Height="40.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g51220"/> </DataNode> <DataNode TextLabel="Fibrillin" GraphId="caeaf" Type="GeneProduct" GroupRef="d38ab"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1837.0833333333214" CenterY="2342.3615136876" Width="137.3333333333338" Height="35.333333333336135" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g04790"/> </DataNode> <DataNode TextLabel="SCP40" GraphId="cc89e" Type="GeneProduct"> <Comment>Serine carboxypesidase</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3223.60013046314" CenterY="795.8333333333336" Width="71.46640574036986" Height="19.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g46350"/> </DataNode> <DataNode TextLabel="THF1" GraphId="c7144" Type="GeneProduct"> <Comment>Inositol phosphatase</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3415.9999999998963" CenterY="1282.500000000002" Width="105.33333333333167" Height="37.000000000004086" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g37250"/> </DataNode> <DataNode TextLabel="Acyl carrier" GraphId="caeab" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3933.0806962025404" CenterY="1731.7185302390958" Width="116.25" Height="23.75" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g12150"/> </DataNode> <DataNode TextLabel="TAP46" GraphId="b74d6" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4155.682137834035" CenterY="1567.4472573839664" Width="95.9999999999993" Height="27.333333333333456" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="ff0033"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g04290 "/> </DataNode> <DataNode TextLabel="BTB-TAZ" GraphId="ccb05" Type="GeneProduct" GroupRef="afee5"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3439.4999999999977" CenterY="2275.0000000000005" Width="188.33333333333303" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g66890 "/> </DataNode> <DataNode TextLabel="Pr1b" GraphId="b293e" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2345.6666666666665" CenterY="1626.6666666666645" Width="88.66666666667035" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="ff0033"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g28450"/> </DataNode> <DataNode TextLabel="Ring Finger" GraphId="fecf7" Type="GeneProduct" GroupRef="aca2c"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3383.333333333332" CenterY="1161.666666666668" Width="109.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g01390"/> </DataNode> <DataNode TextLabel="ALDP" GraphId="f00b3" Type="GeneProduct" GroupRef="c1f9f"> <Comment>Aldolase </Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="5280.999999999999" CenterY="1053.2499999999973" Width="155.83333333334485" Height="21.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="00cc00"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g07020"/> </DataNode> <DataNode TextLabel="PSII-OEP33" GraphId="ff601" Type="GeneProduct" GroupRef="c1f9f"> <Comment>No symbol in gramene so OEP33 was assigned. 33kDa oxygen evolving protein of photosystem II</Comment> <BiopaxRef>e3b</BiopaxRef> 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Database="Rice Ensembl Gene" ID="LOC_Os10g40260 "/> </DataNode> <DataNode TextLabel="Centromere protein" GraphId="ece19" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1943.4999999999925" CenterY="1208.6666666666679" Width="113.0000000000149" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="ff0033"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g20580 "/> </DataNode> <DataNode TextLabel="VP2-like" GraphId="e9243" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4276.908023483366" CenterY="817.5527426160338" Width="103.71819960861075" Height="45.33333333333326" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g05750"/> </DataNode> <DataNode TextLabel="REB " GraphId="ed7f3" Type="GeneProduct"> <Comment>Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4613.662081984901" CenterY="1420.5000000000011" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g58250"/> </DataNode> <DataNode TextLabel="Serine protease" GraphId="e8fea" Type="GeneProduct" GroupRef="eedbd"> <Comment>Os04g0542900, </Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3189.8188878533706" CenterY="1207.9388008698354" Width="112.57657657657614" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g45910"/> </DataNode> <DataNode TextLabel="LOC_Os03g56940" GraphId="bc286" Type="GeneProduct" GroupRef="b4e5e"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2020.0" CenterY="1719.6666666666695" Width="106.0" Height="22.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g56940"/> </DataNode> <DataNode TextLabel="Mitrochondrial carrier" GraphId="d816a" Type="GeneProduct" GroupRef="eedbd"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3188.8188878533706" CenterY="1231.6666666666667" Width="127.98067632850234" Height="20.0" ZOrder="32768" FillColor="Transparent" FontWeight="Bold" FontSize="12" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g11510"/> </DataNode> <DataNode TextLabel="MADS 2" GraphId="fb4b5" Type="GeneProduct" GroupRef="f14fb"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4664.093017578125" CenterY="3263.238473167042" Width="222.66666666666652" Height="35.3333333333361" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g66030"/> </DataNode> <DataNode TextLabel="PGI-a" GraphId="e72bb" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3837.383256182322" CenterY="1575.8925808720087" Width="71.39098493848383" Height="35.048171589305625" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g29070 "/> </DataNode> <DataNode TextLabel="vATP synthase C" GraphId="d4bb3" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4997.979879419851" CenterY="1038.454878747974" Width="161.56485438111366" Height="29.981944332463172" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g51530"/> </DataNode> <DataNode TextLabel="eif(iso)4g" GraphId="a93b5" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3538.8150492264404" CenterY="1191.7407223435473" Width="98.72714486638313" Height="24.666666666666856" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="ff0033"/> <Xref Database="Rice Ensembl Gene" ID=" LOC_Os04g42140"/> </DataNode> <DataNode TextLabel="PHD zf" GraphId="c7fb8" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3854.2777492291993" CenterY="1361.416666666664" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g04980 "/> </DataNode> <DataNode TextLabel="MADS 47" GraphId="c54f7" Type="GeneProduct" GroupRef="abb9a"> <Comment>Also called MDP</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2240.000000000001" CenterY="1237.666666666666" Width="137.33333333333383" Height="35.3333333333361" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g08754"/> </DataNode> <DataNode TextLabel="Permease" GraphId="b7def" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3695.3333333333444" CenterY="1325.0000000000025" Width="118.66666666666663" Height="37.3333333333334" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g04180"/> </DataNode> <DataNode TextLabel="Shaggy kinase" GraphId="a4730" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1051.1666666666688" CenterY="2198.3333333333353" Width="87.66666666666254" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g37740"/> </DataNode> <DataNode TextLabel="Myosin like" GraphId="a7c56" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3848.1485583684935" CenterY="1443.1666666666574" Width="106.7971167369933" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="ff0033"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g02820"/> </DataNode> <DataNode TextLabel="Myosin like" GraphId="b8fa1" Type="GeneProduct" GroupRef="f14fb"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4664.093017578125" CenterY="3192.5718065003703" Width="222.66666666666652" Height="35.3333333333361" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g16120"/> </DataNode> <DataNode TextLabel="Pto kinase Interactor 1" GraphId="a47a0" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3651.513687600644" CenterY="2109.6666666666747" Width="143.02737520128846" Height="24.666666666666288" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="ff0033"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g04520"/> </DataNode> <DataNode TextLabel="PROLM26" GraphId="b689c" Type="GeneProduct" GroupRef="b4e5e"> <Comment>Prolamin precursor, also called RP5</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2024.3333333333253" CenterY="1637.0000000000043" Width="100.0" Height="22.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g10580 "/> </DataNode> <DataNode TextLabel="MADS 3" GraphId="bb9c7" Type="GeneProduct"> <Comment>Also called RAG</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics 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CenterY="1171.666666666667" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g41370"/> </DataNode> <DataNode TextLabel="Oryzain alpha Protease" GraphId="b9653" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2957.549114331716" CenterY="1906.1666666666642" Width="136.4315619967935" Height="17.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="ff0033"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g55650"/> </DataNode> <DataNode TextLabel="rbcL" GraphId="c5f93" Type="GeneProduct" GroupRef="c1f9f"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="5280.999999999999" CenterY="1194.2715264187839" Width="155.83333333334485" Height="21.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="00cc00"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g21268"/> </DataNode> <DataNode TextLabel="TRAB1" GraphId="f2647" Type="GeneProduct" GroupRef="c5b01"> <Comment>Interaction with Wsi18 and Lea3 by orthology to H vulgare bZIP transcription factor TRAB1, ABA RESPONSIVE ELEMENT 1=ABA1</Comment> <BiopaxRef>e3b</BiopaxRef> <BiopaxRef>b08</BiopaxRef> <Graphics CenterX="4612.5833333333385" CenterY="1349.6930379746836" Width="80.0" Height="24.280590717299667" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g36790"/> </DataNode> <DataNode TextLabel="Oligopeptide transporter 3" GraphId="f9b9a" Type="GeneProduct" GroupRef="fd4e2"> <Comment>Isp4-like </Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1524.9074074074017" CenterY="2461.8935634664394" Width="236.6250000000091" Height="35.33333333333621" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g54000 "/> </DataNode> <DataNode TextLabel="S-REP " GraphId="fc61e" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2803.0374149659892" CenterY="1340.377551020409" Width="115.0" Height="24.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g47990"/> </DataNode> <DataNode TextLabel="Smt1-1" GraphId="ca857" Type="GeneProduct"> <Comment>Cycloartenol-C24-methyltransferase</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3300.5104166666783" CenterY="1354.083333333338" Width="130.97916666663696" Height="20.583333333331513" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g10600"/> </DataNode> <DataNode TextLabel="PP2A-B" GraphId="b5e6c" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3748.666666666666" CenterY="1192.5935302390994" Width="116.00000000000006" Height="42.66666666666673" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g40350"/> </DataNode> <DataNode TextLabel="bip129&#10;" GraphId="b12bd" Type="GeneProduct" GroupRef="f2668"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3481.7083333333276" CenterY="1400.5000000000205" Width="137.33333333333394" Height="35.333333333335986" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g40790"/> </DataNode> <DataNode TextLabel="bZIP" GraphId="c8f9f" Type="GeneProduct" GroupRef="f14fb"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4664.093017578125" CenterY="3121.9051398336996" Width="222.66666666666652" Height="35.3333333333361" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g06170"/> </DataNode> <DataNode TextLabel="GTP cyclohydrolase" GraphId="baa54" Type="GeneProduct" GroupRef="c1f9f"> <Comment>GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="5280.999999999999" CenterY="997.2499999999973" Width="155.83333333334485" Height="21.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="00cc00"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g38570"/> </DataNode> <DataNode TextLabel="FERTILLIN" GraphId="b1213" Type="GeneProduct" GroupRef="f2668"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3481.7083333333276" CenterY="1435.8333333333567" Width="137.33333333333394" Height="35.333333333335986" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g01650"/> </DataNode> <DataNode TextLabel="PP2A-3" GraphId="a57b9" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3151.3333333333253" CenterY="2087.0000000000023" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g12580"/> </DataNode> <DataNode TextLabel="msrB-1" GraphId="ba85a" Type="GeneProduct"> <Comment>2 more IDs found on Gramene. Hence called 1, 2 and 3 to differentiate. LOC_Os06g27760=msrB-2, LOC_Os05g33510=msrB-3 (D Nemeth and M Hanumappa 08/17/2010).</Comment> <Comment>Type your comment here</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3006.1384863123953" CenterY="2200.493670886076" Width="80.0" Height="29.67932489451391" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g24600"/> </DataNode> <DataNode TextLabel="SCR-like" GraphId="f1da5" Type="GeneProduct"> <Comment>Scarecrow transcriptional regulator-like protein</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3298.8873114463167" CenterY="1049.666666666668" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g45760"/> </DataNode> <DataNode TextLabel="Cyp2" GraphId="a4140" Type="GeneProduct" GroupRef="eedbd"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3188.8188878533706" CenterY="1271.6666666666667" Width="117.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g02890 "/> </DataNode> <DataNode TextLabel="Delta-COP" GraphId="f5e2e" Type="GeneProduct" GroupRef="d38ab"> <Comment>Delta coatamer </Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1837.0833333333214" CenterY="2437.833333333326" Width="137.3333333333338" Height="35.333333333336135" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g61710"/> </DataNode> <DataNode TextLabel="VDAC5" GraphId="cc06f" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3379.666666666778" CenterY="1774.8333333333405" Width="77.33333333333303" Height="24.333333333333485" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g10510"/> </DataNode> <DataNode TextLabel="E3-Ubi Ligase" GraphId="d924b" Type="GeneProduct" GroupRef="eedbd"> 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Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g33570"/> </DataNode> <DataNode TextLabel="ATP synthase" GraphId="f9d21" Type="GeneProduct" GroupRef="f405f"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2562.666666666679" CenterY="1600.3333333333367" Width="128.0283203125" Height="28.000000000004775" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="00cc00"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g17070"/> </DataNode> <DataNode TextLabel="DPK4" GraphId="ee3af" Type="GeneProduct"> <Comment>Ser/thr/tyr kinase </Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3651.585091420532" CenterY="2162.6666666666674" Width="106.00000000000003" Height="25.33333333333325" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g45300 "/> </DataNode> <DataNode TextLabel="ERG3" GraphId="d27ef" Type="GeneProduct"> <Comment>RPP16</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1522.6666666666692" CenterY="2266.3333333333344" Width="115.3333333333303" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g44870"/> </DataNode> <DataNode TextLabel="LOC_Os02g08530" GraphId="ebb24" Type="GeneProduct" GroupRef="fb6d8"> <Comment>Protein Kinase-UniProt ID</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3630.177928904595" CenterY="2257.666666666627" Width="153.6891911425273" Height="25.333333333333485" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g08530"/> </DataNode> <DataNode TextLabel="Fructose-6-phosphate 1-phosphotransferase" GraphId="a9530" Type="GeneProduct" GroupRef="ae365"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3006.1932367149675" CenterY="1670.6666666666601" Width="259.15297906600904" Height="28.666666666656965" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g25720"/> </DataNode> <DataNode TextLabel="MADS 57" GraphId="e4973" Type="GeneProduct" GroupRef="cbe2e"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1911.4999999999955" CenterY="1635.509259259258" Width="99.66666666666463" Height="21.333333333329303" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g49840"/> </DataNode> <DataNode TextLabel="MADS-box IL" GraphId="f9ce1" Type="GeneProduct" GroupRef="f14fb"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4664.093017578125" CenterY="3298.571806500379" Width="222.66666666666652" Height="35.3333333333361" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g54080"/> </DataNode> <DataNode TextLabel="GF14b" GraphId="e018a" Type="GeneProduct"> <BiopaxRef>e3b</BiopaxRef> <BiopaxRef>e1c</BiopaxRef> <Graphics CenterX="2649.9166666666692" CenterY="702.4166666666667" Width="80.0" Height="39.50000000000016" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g38870"/> </DataNode> <DataNode TextLabel="OsAK" GraphId="c715e" Type="GeneProduct"> <Comment>Adenosine kinase </Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3030.1666666666615" CenterY="2087.0000000000023" Width="93.0" Height="21.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g41590 "/> </DataNode> <DataNode TextLabel="Phragmoplast kinase" GraphId="cef25" Type="GeneProduct" GroupRef="f14fb"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4664.093017578125" CenterY="3157.2384731670345" Width="222.66666666666652" Height="35.3333333333361" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g28260 "/> </DataNode> <DataNode TextLabel="U2 snRNP" GraphId="b245e" Type="GeneProduct" GroupRef="ae365"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3007.333333333327" CenterY="1702.9421768707389" Width="226.66666666665242" Height="35.333333333335986" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g41820"/> </DataNode> <DataNode TextLabel="LOC_Os05g06330" GraphId="e4d2d" Type="GeneProduct" GroupRef="fd4e2"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1523.7499999999943" CenterY="2600.9907407408173" Width="236.6250000000091" Height="35.33333333333621" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g06330"/> </DataNode> <DataNode TextLabel=" EF-1-d2" GraphId="a8b73" Type="GeneProduct"> <Comment>Elongation factor 1 beta 2</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3755.333333333332" CenterY="1931.0000000000023" Width="138.66666666666637" Height="24.00000000000053" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="ff0033"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g29260"/> </DataNode> <DataNode TextLabel=" LOC_Os03g43910" GraphId="f0f7e" Type="GeneProduct" GroupRef="aca2c"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3379.746835443038" CenterY="1214.666666666668" Width="151.89873417721537" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID=" LOC_Os03g43910"/> </DataNode> <DataNode TextLabel="FBK21" GraphId="d00a6" Type="GeneProduct"> <Comment>F-box domain and kelch repeat containing protein</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="4953.583333333336" CenterY="1174.1666666666679" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g21930"/> </DataNode> <DataNode TextLabel="ZF-like" GraphId="a2710" Type="GeneProduct" GroupRef="add74"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3109.333333333332" CenterY="1010.3333333333313" Width="137.3333333333336" Height="35.33333333333612" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g40990"/> </DataNode> <DataNode TextLabel="EF-1-g3" GraphId="c8b59" Type="GeneProduct"> <Comment>eEF-1B gamma 3</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3822.043361744296" CenterY="1994.182841068918" Width="77.4322638531803" Height="25.699015471165698" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g37440"/> </DataNode> <DataNode TextLabel="ADP ribosylation GTPase" GraphId="c0d57" Type="GeneProduct" GroupRef="f2668"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3481.7083333333276" CenterY="1471.1666666666927" Width="143.59263754045907" Height="35.33333333333621" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g17020"/> </DataNode> <DataNode TextLabel="AOXDH" GraphId="e8e8b" Type="GeneProduct" GroupRef="fd4e2"> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1524.9074074074017" CenterY="2325.469505433619" Width="236.6250000000091" Height="35.33333333333621" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g31550"/> </DataNode> <DataNode TextLabel="UOS1" GraphId="bb1cc" Type="GeneProduct" GroupRef="fd4e2"> <Comment>NAD(P)-binding/Rossman fold</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="1523.7499999999943" CenterY="2565.6574074074806" Width="236.6250000000091" Height="35.33333333333621" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g49120"/> </DataNode> <DataNode TextLabel="AHOX" GraphId="ca5a2" Type="GeneProduct"> <Comment>Associated with HOX family protein, expressed (UniProt Q8LN25)- Assigned as AHOX by Nemeth D and Hanumappa M (08/19/2010)</Comment> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="3663.9999999999914" CenterY="1364.0000000000039" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g39030"/> </DataNode> <DataNode TextLabel="EBP89" GraphId="fbe5f" Type="GeneProduct"> <Comment>Also called EREBP1</Comment> <BiopaxRef>b6d</BiopaxRef> <BiopaxRef>b05</BiopaxRef> <Graphics CenterX="3465.527426160335" CenterY="822.7580872011274" Width="95.6118143459862" Height="28.18284106891258" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g08460"/> </DataNode> <DataNode TextLabel="KRP3" GraphId="c5503" Type="GeneProduct"> <BiopaxRef>bf5</BiopaxRef> <Graphics CenterX="4708.185338270286" CenterY="3499.4051398337097" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g40030"/> </DataNode> <DataNode TextLabel="CDKA-1" GraphId="c1852" Type="GeneProduct"> <BiopaxRef>bf5</BiopaxRef> <Graphics CenterX="4828.388418782089" CenterY="3501.03115609387" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g02680"/> </DataNode> <DataNode TextLabel="CDKA-2" GraphId="b957c" Type="GeneProduct"> <BiopaxRef>bf5</BiopaxRef> <Graphics CenterX="4707.591808031175" CenterY="3575.925533645245" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g03060"/> </DataNode> <DataNode TextLabel="CycA1-1" GraphId="cf8e8" Type="GeneProduct"> <BiopaxRef>f8b</BiopaxRef> <BiopaxRef>bf5</BiopaxRef> <Graphics CenterX="4554.778868509378" CenterY="3499.4051398337115" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g13260"/> </DataNode> <DataNode TextLabel="CycD2-2" GraphId="af798" Type="GeneProduct"> <BiopaxRef>bf5</BiopaxRef> <Graphics CenterX="4708.4679437128025" CenterY="3429.7503898887235" Width="93.61263578114813" Height="32.49656036816441" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g42860"/> </DataNode> <DataNode TextLabel="MCM2" GraphId="f644b" Type="GeneProduct"> <BiopaxRef>c02</BiopaxRef> <Graphics CenterX="2283.1759259259265" CenterY="1391.3333333333323" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g29380"/> </DataNode> <DataNode TextLabel="CSN5" GraphId="ea328" Type="GeneProduct"> <Comment/> <BiopaxRef>c02</BiopaxRef> <Graphics CenterX="2429.314814814815" CenterY="1391.3333333333328" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g56070"/> </DataNode> <DataNode TextLabel="RACK1A" GraphId="e0d47" Type="GeneProduct"> <Comment>Also called GPB-LR/ RWD</Comment> <BiopaxRef>a55</BiopaxRef> <BiopaxRef>bc8</BiopaxRef> <Graphics CenterX="1617.333333333339" CenterY="2014.333333333327" Width="80.0" Height="33.99999999999806" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g49290"/> </DataNode> <DataNode TextLabel="GP-alpha-1" GraphId="b13fe" Type="GeneProduct"> <Comment>G-alpha protein also called GPA1/D1/GA1</Comment> <BiopaxRef>a55</BiopaxRef> <Graphics CenterX="1769.6018518518545" CenterY="1919.999999999995" Width="90.1296296296357" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g26890"/> </DataNode> <DataNode TextLabel="Phospholipase C" GraphId="f4ce7" Type="GeneProduct"> <BiopaxRef>a55</BiopaxRef> <Graphics CenterX="1617.1803542673108" CenterY="1925.4907407407372" Width="136.3607085346216" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g49330"/> </DataNode> <DataNode TextLabel="RAC" GraphId="eb74b" Type="GeneProduct" GroupRef="ed3dc"> <BiopaxRef>bc8</BiopaxRef> <BiopaxRef>ed7</BiopaxRef> <Graphics CenterX="1445.7753058954354" CenterY="2062.4006200304784" Width="80.0" Height="32.00000000001649" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc9900"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g12900"/> </DataNode> <DataNode TextLabel="MT2b" GraphId="b6c91" Type="GeneProduct"> <BiopaxRef>ed7</BiopaxRef> <Graphics CenterX="1270.6666666666629" CenterY="2060.1759259259175" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc9900"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g02070"/> </DataNode> <DataNode TextLabel="RISBZ1" GraphId="e5e0d" Type="GeneProduct"> <Comment>Functionaly redundant and compensatory expression between RISBZI and RPBF. 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GraphId="d66ce" Type="GeneProduct" GroupRef="f95b3"> <Comment>basic/helix-loop-helix 56 </Comment> <BiopaxRef>f4f</BiopaxRef> <BiopaxRef>e8f</BiopaxRef> <BiopaxRef>aa5</BiopaxRef> <Graphics CenterX="5226.842105263155" CenterY="1676.306682737377" Width="80.0" Height="27.87786259541805" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g72370"/> </DataNode> <DataNode TextLabel="prx61" GraphId="c2ff6" Type="GeneProduct" GroupRef="cb665"> <Comment>Class III peroxidase 61</Comment> <BiopaxRef>aa5</BiopaxRef> <Graphics CenterX="5441.223832528182" CenterY="1600.6666666666647" Width="241.5458937198078" Height="19.99999999999983" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g59190"/> </DataNode> <DataNode TextLabel="RALF24" GraphId="cd09f" Type="GeneProduct" GroupRef="cb665"> <Comment>Rapid ALkalinization Factor</Comment> 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ID="LOC_Os10g05088"/> </DataNode> <DataNode TextLabel="Retrotransposon " GraphId="cfdfc" Type="GeneProduct"> <Comment>Sulfotransferase</Comment> <BiopaxRef>ff9</BiopaxRef> <Graphics CenterX="4024.5510204081183" CenterY="3543.071806500362" Width="214.6666666666606" Height="24.5" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os12g24050"/> </DataNode> <DataNode TextLabel="DUF151" GraphId="d9a8e" Type="GeneProduct"> <Comment/> <BiopaxRef>ff9</BiopaxRef> <Graphics CenterX="4024.5510204081183" CenterY="3567.571806500362" Width="214.6666666666606" Height="24.5" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g50622"/> </DataNode> <DataNode TextLabel="SAM cmtr" GraphId="a82ed" Type="GeneProduct"> <Comment/> <BiopaxRef>ff9</BiopaxRef> <Graphics CenterX="4024.5510204081183" CenterY="3616.571806500362" Width="214.6666666666606" Height="24.5" 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Database="Rice Ensembl Gene" ID="LOC_Os11g38930"/> </DataNode> <DataNode TextLabel="Terpene cyclases" GraphId="f627e" Type="GeneProduct"> <Comment/> <BiopaxRef>ff9</BiopaxRef> <Graphics CenterX="4266.217687074779" CenterY="3713.571806500362" Width="214.6666666666606" Height="24.5" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g27190"/> </DataNode> <DataNode TextLabel="Isocitrate lyase" GraphId="e4580" Type="GeneProduct"> <Comment/> <BiopaxRef>ff9</BiopaxRef> <Graphics CenterX="4266.217687074781" CenterY="3738.071806500362" Width="214.6666666666606" Height="24.5" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g34520"/> </DataNode> <DataNode TextLabel="DUF584" GraphId="cd6a1" Type="GeneProduct"> <Comment/> <BiopaxRef>ff9</BiopaxRef> <Graphics CenterX="4024.5510204081183" CenterY="3665.571806500362" Width="214.6666666666606" Height="24.5" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g45450"/> </DataNode> <DataNode TextLabel="Integrase" GraphId="ce2bd" Type="GeneProduct"> <Comment/> <BiopaxRef>ff9</BiopaxRef> <Graphics CenterX="4024.5510204081183" CenterY="3690.071806500362" Width="214.6666666666606" Height="24.5" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g11694"/> </DataNode> <DataNode TextLabel="LTPL109" GraphId="cc323" Type="GeneProduct"> <Comment>Extensin_2 </Comment> <BiopaxRef>ff9</BiopaxRef> <Graphics CenterX="4027.3639599299186" CenterY="3717.3847460221623" Width="214.6666666666606" Height="24.5" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g37385"/> </DataNode> <DataNode TextLabel="GlyH" GraphId="d35c0" Type="GeneProduct"> <Comment>Chitinase</Comment> <BiopaxRef>ff9</BiopaxRef> <Graphics CenterX="4024.5510204081183" CenterY="3641.071806500362" Width="214.6666666666606" Height="24.5" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g27400"/> </DataNode> <DataNode TextLabel="CKX2/ Gn1a" GraphId="c9155" Type="GeneProduct"> <Comment>Cytokinin oxidase/dehydrogenase 2 </Comment> <BiopaxRef>a17</BiopaxRef> <BiopaxRef>c4c</BiopaxRef> <Graphics CenterX="3400.8843537415232" CenterY="3292.6917441950745" Width="115.66666666666833" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g10110"/> </DataNode> <DataNode TextLabel="Ghd7&#10;" GraphId="e6c26" Type="GeneProduct"> <Comment>yield potential</Comment> <BiopaxRef>dcd</BiopaxRef> <BiopaxRef>fd6</BiopaxRef> <BiopaxRef>a17</BiopaxRef> <BiopaxRef>eb4</BiopaxRef> <BiopaxRef>c4c</BiopaxRef> <Graphics CenterX="3399.635914290837" 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</DataNode> <DataNode TextLabel="SNAC1" GraphId="abb23" Type="GeneProduct"> <BiopaxRef>ebe</BiopaxRef> <Graphics CenterX="4585.488038179506" CenterY="1650.8621659634277" Width="90.80729998770259" Height="33.08860759492836" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g60080"/> </DataNode> <DataNode TextLabel="PUP2" GraphId="e54e9" Type="GeneProduct"> <BiopaxRef>ebe</BiopaxRef> <Graphics CenterX="4727.745415318231" CenterY="1733.3333333333321" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g46740"/> </DataNode> <DataNode TextLabel="NAC 10" GraphId="b84b9" Type="GeneProduct"> <BiopaxRef>bfc</BiopaxRef> <Graphics CenterX="3399.8843537415232" CenterY="3698.292990300982" Width="115.66666666666833" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g03300"/> </DataNode> <DataNode TextLabel="ZOS1-15" GraphId="b428e" Type="GeneProduct"> <Comment>Salt-stress ABA related</Comment> <BiopaxRef>de9</BiopaxRef> <Graphics CenterX="4799.333333333332" CenterY="1476.3642756680745" Width="110.66666666666723" Height="30.08438818565696" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="cc00cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g62190"/> </DataNode> <DataNode TextLabel="Rab21" GraphId="f6b54" Type="GeneProduct"> <Comment>ABA related water stress + cold stress</Comment> <BiopaxRef>a5f</BiopaxRef> <BiopaxRef>f65</BiopaxRef> <Graphics CenterX="3398.8843537415232" CenterY="3759.616977839927" Width="115.66666666666833" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os11g26790"/> </DataNode> <DataNode TextLabel="Wsi18" GraphId="e6c54" Type="GeneProduct"> <Comment>Interaction with TRAB1 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TextLabel="BEIII" GraphId="c3537" Type="GeneProduct"> <BiopaxRef>f4a</BiopaxRef> <BiopaxRef>b09</BiopaxRef> <Graphics CenterX="3399.884353741489" CenterY="3497.9596569676432" Width="121.5" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g26234"/> </DataNode> <DataNode TextLabel="SSII-2" GraphId="f5ff4" Type="GeneProduct"> <Comment>Also called ALK</Comment> <BiopaxRef>ff5</BiopaxRef> <BiopaxRef>b09</BiopaxRef> <Graphics CenterX="2636.192176870749" CenterY="2296.166666666668" Width="121.5" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g51070"/> </DataNode> <DataNode TextLabel="APL4/ AGPL4" GraphId="af6be" Type="GeneProduct"> <BiopaxRef>e78</BiopaxRef> <BiopaxRef>b09</BiopaxRef> <Graphics CenterX="1642.8750000000039" CenterY="3428.666666666671" Width="121.5" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="006666"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g13980"/> </DataNode> <DataNode TextLabel="SSIIIb" GraphId="a8b5c" Type="GeneProduct"> <Comment>Also called ALK</Comment> <BiopaxRef>b09</BiopaxRef> <BiopaxRef>ff5</BiopaxRef> <Graphics CenterX="2447.5255102040815" CenterY="2341.0" Width="121.5" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g53310"/> </DataNode> <DataNode TextLabel="SSIIc" GraphId="fee6c" Type="GeneProduct"> <Comment>Also called ALK</Comment> <BiopaxRef>b09</BiopaxRef> <BiopaxRef>ff5</BiopaxRef> <Graphics CenterX="1642.8750000000039" CenterY="3472.3333333333376" Width="121.5" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g30156"/> </DataNode> <DataNode TextLabel="GBSSII" GraphId="abde4" Type="GeneProduct"> <Comment>Also called ALK</Comment> <BiopaxRef>ff5</BiopaxRef> <BiopaxRef>b09</BiopaxRef> <Graphics CenterX="2395.8588435374218" CenterY="2437.499999999996" Width="121.5" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g22930"/> </DataNode> <DataNode TextLabel="PCNA" GraphId="a4cd3" Type="GeneProduct"> <Comment>Proliferating cell nuclear antigen expressed strongly in the shoot apical meristem</Comment> <BiopaxRef>e3b</BiopaxRef> <BiopaxRef>a18</BiopaxRef> <BiopaxRef>f34</BiopaxRef> <Graphics CenterX="2429.608843537415" CenterY="1438.2755102040817" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="ff0000"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g56130"/> </DataNode> <DataNode TextLabel="CPL1" GraphId="f8866" Type="GeneProduct"> <Comment>Seed Shattering</Comment> <BiopaxRef>edb</BiopaxRef> <Graphics CenterX="3400.8843537415232" CenterY="3245.719781578253" Width="115.66666666666833" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g10690"/> </DataNode> <DataNode TextLabel="CycB1;1" GraphId="fc3de" Type="GeneProduct"> <Comment>Seed Shattering</Comment> <BiopaxRef>ad9</BiopaxRef> <Graphics CenterX="3400.8843537415232" CenterY="3267.71043578386" Width="115.66666666666833" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g59120"/> </DataNode> <DataNode TextLabel="ENOD93-1" GraphId="d1fa2" Type="GeneProduct"> <BiopaxRef>fb5</BiopaxRef> <Graphics CenterX="3399.8843537415232" CenterY="3727.292990300982" Width="115.66666666666833" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g05010"/> </DataNode> <DataNode TextLabel="RSR1" GraphId="a75c6" Type="GeneProduct"> <BiopaxRef>e18</BiopaxRef> <Graphics CenterX="2793.3333333333326" CenterY="2769.4999999999995" Width="80.0" Height="35.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g40280"/> </DataNode> <DataNode TextLabel="ISA2" GraphId="f9424" Type="GeneProduct"> <BiopaxRef>b09</BiopaxRef> <BiopaxRef>eee</BiopaxRef> <Graphics CenterX="2256.583333333333" CenterY="3145.0" Width="121.5" Height="66.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g32710"/> </DataNode> <DataNode TextLabel="PUL" GraphId="c47c1" Type="GeneProduct"> <Comment>expression diminished during grain filling at high temperatures</Comment> <BiopaxRef>ff5</BiopaxRef> <BiopaxRef>f15</BiopaxRef> <BiopaxRef>e18</BiopaxRef> <BiopaxRef>e3b</BiopaxRef> <Graphics CenterX="2605.6666666666606" CenterY="3022.333333333334" Width="100.0" Height="45.33333333333394" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0033ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g08270"/> </DataNode> <DataNode TextLabel="ISA1" GraphId="d904c" Type="GeneProduct"> <Comment>expression diminished during grain filling at high temperatures </Comment> <BiopaxRef>b09</BiopaxRef> <BiopaxRef>d0b</BiopaxRef> <BiopaxRef>eee</BiopaxRef> <Graphics CenterX="2301.8588435374145" CenterY="2738.6666666666642" Width="121.5" Height="40.66666666667152" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g40930"/> </DataNode> <DataNode TextLabel="ISA3" GraphId="db992" Type="GeneProduct"> <BiopaxRef>b09</BiopaxRef> <BiopaxRef>e18</BiopaxRef> <BiopaxRef>eee</BiopaxRef> <Graphics CenterX="2100.525510204081" CenterY="2704.333333333331" Width="121.5" Height="25.999999999995453" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g29404"/> </DataNode> <DataNode TextLabel="PHOL&#9;" GraphId="e25b6" Type="GeneProduct"> <BiopaxRef>f15</BiopaxRef> <BiopaxRef>e18</BiopaxRef> <Graphics CenterX="2111.2755102040815" CenterY="2622.0" Width="80.0" Height="30.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g55090"/> </DataNode> <DataNode TextLabel="SSI" GraphId="f34d1" Type="GeneProduct"> <BiopaxRef>e18</BiopaxRef> <Graphics CenterX="2111.2755102040815" CenterY="2546.4999999999986" Width="80.0" Height="41.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g06560"/> </DataNode> <DataNode TextLabel="SBEIIa" GraphId="ef463" Type="GeneProduct"> <Comment>expression diminished during grain filling at high temperatures</Comment> <BiopaxRef>ea9</BiopaxRef> <BiopaxRef>f4a</BiopaxRef> <BiopaxRef>b09</BiopaxRef> <BiopaxRef>e18</BiopaxRef> <Graphics CenterX="2244.273094745153" CenterY="2386.6103059581264" Width="182.33333333332712" Height="27.333333333333183" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g33460"/> </DataNode> <DataNode TextLabel="PHOH" GraphId="d9c6e" Type="GeneProduct"> <Comment>Also called ALK</Comment> <BiopaxRef>ff5</BiopaxRef> <BiopaxRef>b09</BiopaxRef> <Graphics CenterX="2634.5255102040846" CenterY="2440.166666666665" Width="121.5" Height="29.666666666663073" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g63270"/> </DataNode> <DataNode TextLabel="DPE2" GraphId="d2024" Type="GeneProduct"> <Comment>Also called ALK</Comment> <BiopaxRef>f15</BiopaxRef> <Graphics CenterX="2646.3306631831474" CenterY="2381.5" Width="121.5" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g46790"/> </DataNode> <DataNode TextLabel="SSIVa" GraphId="f0927" Type="GeneProduct"> <Comment>Also called ALK</Comment> <BiopaxRef>b09</BiopaxRef> <BiopaxRef>ff5</BiopaxRef> <Graphics CenterX="1642.8750000000039" CenterY="3511.6666666666647" Width="121.5" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g52250"/> </DataNode> <DataNode TextLabel="SSIVb" GraphId="a6de9" Type="GeneProduct"> <Comment>Also called ALK</Comment> <BiopaxRef>b09</BiopaxRef> <BiopaxRef>ff5</BiopaxRef> <Graphics CenterX="1642.8750000000039" CenterY="3548.3333333333335" Width="121.5" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g45720"/> </DataNode> <DataNode TextLabel="Sci2" GraphId="ecb60" Type="GeneProduct"> <BiopaxRef>d54</BiopaxRef> <Graphics CenterX="4344.030626596587" CenterY="3834.8522600011106" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="ff0000"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g42860"/> </DataNode> <DataNode TextLabel="Amy1A" GraphId="e03d7" Type="GeneProduct"> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3653.8843537414923" CenterY="3205.071806500377" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g52710&#10;"/> </DataNode> <DataNode TextLabel="Amy3A" GraphId="af7fa" Type="GeneProduct"> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3653.8843537414923" CenterY="3244.4051398337083" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g28400"/> </DataNode> <DataNode TextLabel="Amy3B/Amy3C" GraphId="ec2bc" Type="GeneProduct"> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="1642.1041666666686" CenterY="3595.9999999999995" Width="84.20833333333712" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g28420"/> </DataNode> <DataNode TextLabel="Amy3D" GraphId="ddccd" Type="GeneProduct"> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="1642.8750000000039" CenterY="3643.3333333333326" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000ff"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g36910"/> </DataNode> <DataNode TextLabel="Amy3E" GraphId="c2de2" Type="GeneProduct"> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="1642.8750000000039" CenterY="3685.3333333333353" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g36900"/> </DataNode> <DataNode TextLabel="Amy4A" GraphId="b1e4c" Type="GeneProduct"> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3653.8843537414923" CenterY="3284.4051398336983" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g51754"/> </DataNode> <DataNode TextLabel="Bam 5" GraphId="bb033" Type="GeneProduct"> <BiopaxRef>fc4</BiopaxRef> <BiopaxRef>c5c</BiopaxRef> <Graphics CenterX="3548.8843537414714" CenterY="3353.4051398337087" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g32810"/> </DataNode> <DataNode TextLabel="Bam 6" GraphId="f952c" Type="GeneProduct"> <BiopaxRef>fc4</BiopaxRef> <BiopaxRef>c5c</BiopaxRef> <Graphics CenterX="3548.8843537414714" CenterY="3393.4051398337106" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os09g39570"/> </DataNode> <DataNode TextLabel="Bam 7" GraphId="a42d3" Type="GeneProduct"> <BiopaxRef>fc4</BiopaxRef> <BiopaxRef>c5c</BiopaxRef> <Graphics CenterX="3548.8843537414714" CenterY="3433.071806500375" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g04770"/> </DataNode> <DataNode TextLabel="Bam 1" GraphId="e1553" Type="GeneProduct"> <BiopaxRef>c5c</BiopaxRef> <Graphics CenterX="3548.8843537414714" CenterY="3209.071806500376" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os10g41550"/> </DataNode> <DataNode TextLabel="Bam 2" GraphId="cf4e2" Type="GeneProduct"> <BiopaxRef>c5c</BiopaxRef> <Graphics CenterX="3548.8843537414714" CenterY="3246.7384731670427" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g35940"/> </DataNode> <DataNode TextLabel="Bam 3" GraphId="dcb39" Type="GeneProduct"> <BiopaxRef>c5c</BiopaxRef> <Graphics CenterX="3548.8843537414714" CenterY="3283.4051398337083" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g35880"/> </DataNode> <DataNode TextLabel="Bam 4" GraphId="a3800" Type="GeneProduct"> <BiopaxRef>c5c</BiopaxRef> <Graphics CenterX="3548.8843537414714" CenterY="3318.7384731670427" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="006666"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g47120"/> </DataNode> <DataNode TextLabel="Bam 8" GraphId="f4c93" Type="GeneProduct"> <BiopaxRef>c5c</BiopaxRef> <Graphics CenterX="3548.8843537414714" CenterY="3469.7384731670427" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g13550"/> </DataNode> <DataNode TextLabel="Bam 9" GraphId="f2b4c" Type="GeneProduct"> <BiopaxRef>c5c</BiopaxRef> <Graphics CenterX="3548.8843537414714" CenterY="3504.738473167042" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g03690"/> </DataNode> <DataNode TextLabel="Bam 10" GraphId="efbda" Type="GeneProduct"> <BiopaxRef>c5c</BiopaxRef> <Graphics CenterX="3548.8843537414714" CenterY="3543.4051398337115" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g22790"/> </DataNode> <DataNode TextLabel="Vin 2" GraphId="ef59f" Type="GeneProduct"> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3653.8843537414923" CenterY="3353.1884717387916" Width="80.0" Height="19.577212527506006" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g01590"/> </DataNode> <DataNode TextLabel="Vin1" GraphId="daa11" Type="GeneProduct"> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3653.8843537414923" CenterY="3317.64374466921" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g45290"/> </DataNode> <DataNode TextLabel="beta-fructofuranosidase" GraphId="d0055" Type="GeneProduct"> <Comment>Neutral/alkaline invertase 1 Assigned as NA-INV1 by Nemeth D and Hanumappa M (10/21/2010)</Comment> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3621.603644615361" CenterY="3590.880805009504" Width="143.01461100336192" Height="25.35579606398751" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g20020"/> </DataNode> <DataNode TextLabel="INV2" GraphId="ae33b" Type="GeneProduct"> <Comment>Neutral/alkaline invertase 2 Assigned as NA-INV1 by Nemeth D and Hanumappa M (10/21/2010)</Comment> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3653.0792007624264" CenterY="3387.858489313677" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g22900"/> </DataNode> <DataNode TextLabel="INV3" GraphId="f5d61" Type="GeneProduct"> <Comment>Neutral/alkaline invertase 3 Assigned as NA-INV1 by Nemeth D and Hanumappa M (10/21/2010)</Comment> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3654.8843537414923" CenterY="3432.525155980345" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g32730"/> </DataNode> <DataNode TextLabel="SUS1" GraphId="c203c" Type="GeneProduct"> <Comment>Sucrose synthase 1 </Comment> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="1642.8750000000039" CenterY="3727.999999999996" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g28330"/> </DataNode> <DataNode TextLabel="SUS2" GraphId="d72ff" Type="GeneProduct"> <Comment>Sucrose synthase 2 </Comment> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="1642.8750000000039" CenterY="3772.666666666663" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g09450"/> </DataNode> <DataNode TextLabel="SUS3" GraphId="da118" Type="GeneProduct"> <Comment>Sucrose synthase 3 </Comment> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="1642.8750000000039" CenterY="3819.9999999999945" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os07g42490"/> </DataNode> <DataNode TextLabel="SuSy4" GraphId="c159d" Type="GeneProduct"> <Comment>Sucrose synthase 4 </Comment> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3653.8843537414923" CenterY="3467.858489313693" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os03g22120"/> </DataNode> <DataNode TextLabel="SuSy5" GraphId="cd72f" Type="GeneProduct"> <Comment>Sucrose synthase 5 </Comment> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3653.8843537414923" CenterY="3507.191822647027" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g58480"/> </DataNode> <DataNode TextLabel="SuSy6" GraphId="b842e" Type="GeneProduct"> <Comment>Sucrose synthase 6 </Comment> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3653.8843537414923" CenterY="3550.5251559803582" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os04g24430"/> </DataNode> <DataNode TextLabel="SPP2" GraphId="d69c0" Type="GeneProduct"> <Comment>sucrose-phosphatase 2 </Comment> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3755.7593537414477" CenterY="3235.7384731670304" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g05030"/> </DataNode> <DataNode TextLabel="SPP1" GraphId="fc50c" Type="GeneProduct"> <Comment>sucrose-phosphatase 1 </Comment> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3755.7593537414477" CenterY="3202.405139833699" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g27880"/> </DataNode> <DataNode TextLabel="SPS-Hv" GraphId="bd21e" Type="GeneProduct"> <Comment>sucrose-phosphate synthase-Hordeum vulgare= named after table III on Yamakawa et al. (2007) </Comment> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3755.7593537414477" CenterY="3266.0718065003625" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os02g09170"/> </DataNode> <DataNode TextLabel="SPS-Zm" GraphId="b0776" Type="GeneProduct"> <Comment>sucrose-phosphate synthase-Zea mays= named after table III on Yamakawa et al. (2007) </Comment> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3755.7593537414477" CenterY="3301.4051398336946" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os06g42824"/> </DataNode> <DataNode TextLabel="SPS-O spp" GraphId="a3c08" Type="GeneProduct"> <Comment>sucrose-phosphate synthase-Oncidium spp= named after table III on Yamakawa et al. (2007) </Comment> <BiopaxRef>fc4</BiopaxRef> <Graphics CenterX="3755.7593537414477" CenterY="3334.0718065003607" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="009999"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os08g20660"/> </DataNode> <DataNode TextLabel="SPS-So" GraphId="b24c3" Type="GeneProduct"> <Comment>sucrose-phosphate synthase-Saccharum officinarum= named after table III on Yamakawa et al. 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ID="LOC_Os03g31750"/> </DataNode> <DataNode TextLabel="LEA 14-A" GraphId="aa0cd" Type="GeneProduct"> <BiopaxRef>b19</BiopaxRef> <Graphics CenterX="2060.6666666666706" CenterY="3450.3333333333335" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="16" Valign="Middle" Color="0000cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os05g50710"/> </DataNode> <DataNode TextLabel="LOC_Os01g14110" GraphId="b73cb" Type="GeneProduct"> <Comment>Assigned as bHLH-tf by Nemeth D and Hanumappa M (10/21/2010)</Comment> <BiopaxRef>b19</BiopaxRef> <Graphics CenterX="2060.6666666666706" CenterY="3486.9999999999986" Width="108.66666666666606" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" Color="0000cc"/> <Xref Database="Rice Ensembl Gene" ID="LOC_Os01g14110"/> </DataNode> <DataNode TextLabel="Complex 1L" GraphId="b5889" Type="GeneProduct"> <Comment>Assigned as Complex 1L by Nemeth D and Hanumappa M (10/21/2010) complex 1 family protein-like (LYR 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