Glycogen synthesis and degradation (Bombyx mori)

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<?xml version="1.0" encoding="UTF-8"?> <Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Glycogen synthesis and degradation" Data-Source="WikiPathways" Version="WP500_r141799" Author="[Kotaro470]" Last-Modified="20251123120257" Organism="Bombyx mori"> <Comment Source="WikiPathways-description">Glycogen is a very large, branched polymer of glucose residues. Within skeletal muscle and liver glucose is stored as glycogen. In the liver, glycogen synthesis and degradation are regulated to maintain blood-glucose levels as required to meet the needs of the organism as a whole. In contrast, in muscle, these processes are regulated to meet the energy needs of the muscle itself. '''Glycogen synthesis''' is, unlike its breakdown, endergonic. This means that glycogen synthesis requires the input of energy. Energy for glycogen synthesis comes from UTP, which reacts with glucose-1-phosphate, forming UDP-glucose, in reaction catalyzed by UDP-glucose pyrophosphorylase. Glycogen is synthesized from monomers of UDP-glucose by the enzyme glycogen synthase, which progressively lengthens the glycogen chain with (a1-&gt;4) bonded glucose. As glycogen synthase can only lengthen an existing chain, the protein glycogenin is needed to initiate the synthesis of glycogen. The glycogen-branching enzyme, amylo (a1-&gt;4) to (a1-&gt;6) transglycosylase, catalyzes the transfer of a terminal fragment of 6-7 glucose residues from a nonreducing end to the C-6 hydroxyl group of a glucose residue deeper into the interior of the glycogen molecule. The branching enzyme can act upon only a branch having at least 11 residues, and the enzyme may transfer to the same glucose chain or adjacent glucose chains. '''Glycogen degradation''' consists of three steps: (1) the release of glucose 1-phosphate from glycogen, (2) the remodeling of the glycogen substrate to permit further degradation, and (3) the conversion of glucose 1-phosphate into glucose 6-phosphate for further metabolism. Information partly derived from "Biochemistry" by Stryer and [Wikipedia](http://en.wikipedia.org/wiki/Glycogen). The original pathway (https://www.wikipathways.org/pathways/WP500) was lifted into Bombyx mori.</Comment> <BiopaxRef>d7e</BiopaxRef> <Graphics BoardWidth="1074.0" BoardHeight="766.3945178953635" /> <DataNode TextLabel="PYGM" GraphId="a03" Type="GeneProduct"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="PYGM | phosphorylase glycogen; muscle (McArdle..." /> <Graphics CenterX="344.43586916574804" CenterY="361.1025358324136" Width="60.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="KWMTBOMO07250" /> </DataNode> <DataNode TextLabel="PPP2CB" GraphId="a2e" Type="GeneProduct" GroupRef="ec7ec"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="PPP2CB | protein phosphatase 2 (formerly 2A) c..." /> <Graphics CenterX="416.11978418710504" CenterY="453.3500659359661" Width="66.66666666666667" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="KWMTBOMO01147" /> </DataNode> <DataNode TextLabel="PHKB" GraphId="a31" Type="GeneProduct" GroupRef="a37a0"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="PHKB | phosphorylase kinase beta" /> <Graphics CenterX="389.61940226327516" CenterY="175.0528097494934" Width="60.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="KWMTBOMO02146" /> </DataNode> <DataNode TextLabel="PYGM" GraphId="a362c" Type="Protein" GroupRef="aa888"> <Comment>"PYG, muscle form" originally</Comment> <Graphics CenterX="952.9999999999999" CenterY="227.33333333333297" Width="60.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Uniprot-TrEMBL" ID="P11217" /> </DataNode> <DataNode TextLabel="GYS2" GraphId="a3c" Type="GeneProduct"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="GYS2 | glycogen synthase 2 (liver)" /> <Graphics CenterX="628.333333333333" CenterY="364.33333333333263" Width="60.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="MSTRG.13081.1" /> </DataNode> <DataNode TextLabel="PHKG2" GraphId="a9b" Type="GeneProduct" GroupRef="a37a0"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="PHKG2 | phosphorylase kinase gamma 2 (testis)" /> <Graphics CenterX="449.61940226327494" CenterY="115.05280974949319" Width="60.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="MSTRG.7400.2" /> </DataNode> <DataNode TextLabel="Glycogen" GraphId="aa2" Type="Metabolite"> <Graphics CenterX="268.66666666666737" CenterY="304.66666666666595" Width="78.33333333333333" Height="19.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff" /> <Xref Database="CAS" ID="9005-79-2" /> </DataNode> <DataNode TextLabel="PPP2R5C" GraphId="ac1" Type="GeneProduct" GroupRef="ec7ec"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="PPP2R5C | protein phosphatase 2 regulatory sub..." /> <Graphics CenterX="416.11978418710504" CenterY="653.350065935966" Width="66.66666666666667" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="KWMTBOMO06980" /> </DataNode> <DataNode TextLabel="CALM1" GraphId="af6" Type="GeneProduct" GroupRef="a37a0"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="CALM1 | calmodulin 1 (phosphorylase kinase del..." /> <Graphics CenterX="449.61940226327494" CenterY="135.0528097494932" Width="60.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="MSTRG.1924.2" /> </DataNode> <DataNode TextLabel="cAMP" GraphId="afdba" Type="Metabolite"> <Graphics CenterX="481.0000000000002" CenterY="19.99999999999993" Width="56.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff" /> <Xref Database="HMDB" ID="HMDB0000058" /> </DataNode> <DataNode TextLabel="PHKA1" GraphId="b13" Type="GeneProduct" GroupRef="a37a0"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="PHKA1 | phosphorylase kinase alpha 1 (muscle)" /> <Graphics CenterX="389.61940226327516" CenterY="115.05280974949319" Width="60.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="KWMTBOMO07759" /> </DataNode> <DataNode TextLabel="UGP2" GraphId="b6f" Type="GeneProduct" GroupRef="aab63"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="UGP2 | UDP-glucose pyrophosphorylase 2" /> <Graphics CenterX="734.9999999999997" CenterY="128.0000000000004" Width="60.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="KWMTBOMO04170" /> </DataNode> <DataNode TextLabel="Glycogen (n+1)" GraphId="b8494" Type="Metabolite"> <Graphics CenterX="75.33333333333336" CenterY="411.33333333333314" Width="120.33333333333333" Height="19.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff" /> <Xref Database="CAS" ID="9005-79-2" /> </DataNode> <DataNode TextLabel="Glucose-1-phosphate" GraphId="b9f" Type="Metabolite"> <Graphics CenterX="648.9999999999999" CenterY="90.33333333333347" Width="140.0" Height="19.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff" /> <Xref Database="CAS" ID="59-56-3" /> </DataNode> <DataNode TextLabel="PYGL" GraphId="bbcb8" Type="Protein" GroupRef="aa888"> <Comment>"PYG, liver form" originally</Comment> <Graphics CenterX="952.9999999999999" CenterY="207.33333333333292" Width="60.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Uniprot-TrEMBL" ID="P06737" /> </DataNode> <DataNode TextLabel="GSK3A" GraphId="bf3" Type="GeneProduct" GroupRef="d27c7"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="GSK3A | glycogen synthase kinase 3 alpha" /> <Graphics CenterX="628.6666666666664" CenterY="441.9999999999993" Width="60.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="MSTRG.1434.4" /> </DataNode> <DataNode TextLabel="PPP2R3A" GraphId="bf6" Type="GeneProduct" GroupRef="ec7ec"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="PPP2R3A | protein 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TextLabel="CALM3" GraphId="c2a" Type="GeneProduct" GroupRef="a37a0"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="CALM3 | calmodulin 3 (phosphorylase kinase del..." /> <Graphics CenterX="569.6194022632769" CenterY="115.05280974949319" Width="60.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="KWMTBOMO01260" /> </DataNode> <DataNode TextLabel="PPP2R5E" GraphId="c42" Type="GeneProduct" GroupRef="ec7ec"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="PPP2R5E | protein phosphatase 2 regulatory sub..." /> <Graphics CenterX="549.453117520438" CenterY="653.3500659359657" Width="66.66666666666667" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="KWMTBOMO15169" /> </DataNode> <DataNode TextLabel="UDP-glucose" GraphId="d1c90" Type="Metabolite"> <Graphics CenterX="647.9999999999998" CenterY="286.9999999999996" Width="90.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff" /> <Xref Database="HMDB" ID="HMDB0000286" /> </DataNode> <DataNode TextLabel="PPP2R5D" GraphId="d4b" Type="GeneProduct" GroupRef="ec7ec"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="PPP2R5D | protein phosphatase 2 regulatory sub..." /> <Graphics CenterX="482.78645085377246" CenterY="593.3500659359655" Width="66.66666666666667" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="KWMTBOMO10896" /> </DataNode> <DataNode TextLabel="Glucose 1-phosphate" GraphId="d5dd2" Type="Metabolite"> <Graphics CenterX="268.6666666666665" CenterY="415.99999999999983" Width="123.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff" /> <Xref Database="HMDB" ID="HMDB0001586" /> </DataNode> <DataNode TextLabel="Glycogen" GraphId="da6" Type="Metabolite"> <Graphics CenterX="721.9999999999998" CenterY="522.9999999999991" Width="78.33333333333333" Height="19.0" ZOrder="32768" FontSize="12" Valign="Middle" Color="0000ff" /> 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CenterX="267.9999999999998" CenterY="576.0000000000003" Width="80.0" Height="20.0" ZOrder="32768" FontWeight="Bold" FontSize="12" Valign="Middle" ShapeType="RoundedRectangle" Color="14961e" /> <Xref Database="WikiPathways" ID="WP534" /> </DataNode> <DataNode TextLabel="GSK3B" GraphId="ea5" Type="GeneProduct" GroupRef="d27c7"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="GSK3B | glycogen synthase kinase 3 beta" /> <Graphics CenterX="628.6666666666664" CenterY="481.9999999999993" Width="60.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="KWMTBOMO10958" /> </DataNode> <DataNode TextLabel="HK1" GraphId="ea53e" Type="Protein"> <Comment>"Hexokinase-1 (Brain)" originally</Comment> <Graphics CenterX="140.00000000000006" CenterY="547.0000000000001" Width="60.0" Height="20.0" ZOrder="32768" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="KWMTBOMO13777" /> </DataNode> <DataNode TextLabel="PHKG1" GraphId="eb4" Type="GeneProduct" 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phosphorylase kinase beta" /> <Graphics CenterX="449.61940226327494" CenterY="215.05280974949343" Width="60.0" Height="20.0" ZOrder="32787" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="MSTRG.17878.7" /> </DataNode> <DataNode TextLabel="PHKB" GraphId="eb778" Type="GeneProduct" GroupRef="a37a0"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="PHKB | phosphorylase kinase beta" /> <Graphics CenterX="449.61940226327494" CenterY="235.05280974949343" Width="60.0" Height="20.0" ZOrder="32788" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="MSTRG.17878.9" /> </DataNode> <DataNode TextLabel="PHKB" GraphId="e2bea" Type="GeneProduct" GroupRef="a37a0"> <Attribute Key="org.pathvisio.model.BackpageHead" Value="PHKB | phosphorylase kinase beta" /> <Graphics CenterX="449.61940226327494" CenterY="255.05280974949346" Width="60.0" Height="20.0" ZOrder="32789" FontSize="12" Valign="Middle" /> <Xref Database="Other" ID="MSTRG.17878.10" /> </DataNode> <DataNode 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rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Takuma Sakamoto</bp:AUTHORS> <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Takeya Kasukawa</bp:AUTHORS> <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Hiroko Tabunoki</bp:AUTHORS> </bp:PublicationXref> <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="d7e"> <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">5083874</bp:ID> <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PubMed</bp:DB> <bp:TITLE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Glycogen metabolism in the normal red blood cell.</bp:TITLE> <bp:SOURCE rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Blood</bp:SOURCE> <bp:YEAR rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1972</bp:YEAR> <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Moses SW</bp:AUTHORS> <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Bashan N</bp:AUTHORS> <bp:AUTHORS rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Gutman A</bp:AUTHORS> </bp:PublicationXref> </Biopax> </Pathway>

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