Help:DataVisualizationInCytoscape
From WikiPathways
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| - | This tutorial | + | '''This tutorial has been replaced by the [https://cytoscape.org/cytoscape-tutorials/protocols/wikipathways-app/#/title WikiPathways App Tutorial].''' |
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= Installation = | = Installation = | ||
=== Cytoscape === | === Cytoscape === | ||
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=== Import data to Cytoscape === | === Import data to Cytoscape === | ||
| - | * To import the experimental data, select '''File > Import > Table | + | * To import the experimental data, select '''File > Import > Table from File...'''. Select the ''starvation_dataset_trans.txt'' file and click '''Open'''. |
* Under '''Where to Import Table Data''', choose '''To selected networks only'''. | * Under '''Where to Import Table Data''', choose '''To selected networks only'''. | ||
* To select both pathways, click the '''Select All''' button. | * To select both pathways, click the '''Select All''' button. | ||
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* For the purposes of this tutorial, click the key symbol. This defines the '''ensid''' column as being the key column, which will be used to link the data to the pathways. | * For the purposes of this tutorial, click the key symbol. This defines the '''ensid''' column as being the key column, which will be used to link the data to the pathways. | ||
| - | [[image:DataImport.png|left|]]<br clear="all" /> | + | [[image:DataImport.png|600px|left|]]<br clear="all" /> |
* Click '''OK''' to import the data. | * Click '''OK''' to import the data. | ||
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[[image:ExportPathway.png|left|]]<br clear="all" /> | [[image:ExportPathway.png|left|]]<br clear="all" /> | ||
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Current revision
This tutorial has been replaced by the WikiPathways App Tutorial.
