Help:DataVisualizationInCytoscape

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(Import data to Cytoscape)
Current revision (22:03, 9 November 2018) (view source)
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This tutorial describes how to visualize experimental data on WikiPathways in Cytoscape. After importing pathways using the WikiPathways App, they are mapped to the same identifier system as used by the data. Data are then imported, and a visual style is created to visualize the data on pathways.
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'''This tutorial has been replaced by the [https://cytoscape.org/cytoscape-tutorials/protocols/wikipathways-app/#/title WikiPathways App Tutorial].'''
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Also see the [https://cytoscape.github.io/cytoscape-tutorials/protocols/modules/pathway-data-visualization/#/title Cytoscape tutorial for pathway visualization].
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= Installation =
= Installation =
=== Cytoscape ===
=== Cytoscape ===
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* For the purposes of this tutorial, click the key symbol. This defines the '''ensid''' column as being the key column, which will be used to link the data to the pathways.
* For the purposes of this tutorial, click the key symbol. This defines the '''ensid''' column as being the key column, which will be used to link the data to the pathways.
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[[image:DataImport.png|left|]]<br clear="all" />
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[[image:DataImport.png|600px|left|]]<br clear="all" />
* Click '''OK''' to import the data.
* Click '''OK''' to import the data.
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[[image:ExportPathway.png|left|]]<br clear="all" />
[[image:ExportPathway.png|left|]]<br clear="all" />
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Current revision

This tutorial has been replaced by the WikiPathways App Tutorial.

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