WikiPathways

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{|  
{|  
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| <div class="frontPagePanel blueBg" style="width:90%;margin:1em;width=100%">
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<!-- Special Notice Section-->
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<h2 class="frontPagePanel blueFg">A Wiki for Biological Pathways</h2>
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<!--
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<font size=2>'''In the “tradition” of <span class=plainlinks>[http://wikipedia.org Wikipedia]</span> and other wiki platforms, WikiPathways is intended to be an open, public space for content editing dedicated to biological pathways, facilitating the contribution and maintenance of pathway information from the scientific community.'''</font></div>
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|colspan="8"|<div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
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<h2 class="frontPagePanel yellowFg">11 April 2019: Scheduled Downtime</h2>
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<font size=2>'''We will be taking the site down for an hour at 24:00UTC on April 11th. We are switching over to new and improved infrastructure! Sorry for any inconveniences.'''</font></div>
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<div class="frontPagePanel yellowBg" style="width:90%;margin:1em;width=100%">
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<!-- TECHNICAL DIFFICULTIES -->
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<h2 class="frontPagePanel yellowFg">How To Find a Pathway</h2>
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<!--
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:There are many ways to find your pathways of interest. You can search by:
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|-valign="top"
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:* Name of the pathway
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|colspan="8"|<div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
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:* Browse by species
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<h2 class="frontPagePanel yellowFg">2015-Sep-01: Technical issues.</h2>
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:* Browse by pathway categories
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<font size=2>'''We are currently experiencing some technical issues, so some pages are not accessible. We are working hard to fix those issues. Sorry for any inconveniences.'''</font></div>
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-->
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:Coming soon:
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<!-- ANNOUNCEMENTS -->
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:*Search by gene name
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<!--
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:*Advanced search options, limit by organism or category
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|colspan="8"|<div class="frontPagePanel redBg" style="width:95%;margin:1em;width=100%">
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<h2 class="frontPagePanel redFg">Share your pathway knowledge in the fight against COVID-19</h2>
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<font size=2>'''''ACCESS'' the rapidly growing [[Portal:COVID-19|collection of COVID-19 pathways]], ''CONTRIBUTE'' your time and domain knowledge about pathway biology as a [[Help:Authors|pathway author]], and ''USE'' these pathways in [[Help:Tools_using_WikiPathways|your research]].'''</font></div>
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<h2 class="frontPagePanel yellowFg">Viewing Pathways</h2>
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<!-- Page Content -->
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:<big>'''Image'''</big>
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|-valign="top"
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:Once you are on a Pathway Page you can click on the image of the pathway to view the SVG representation.  The pathway image is available for download in SVG and PNG formats.
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|<div class="frontPagePanel greenBg" style="width:95%;margin:1em;width=100%">
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:<big>'''Text'''</big>
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<h2 class="frontPagePanel greenFg">Try the New WikiPathways</h2>
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:Each Pathway Page has a text description, itemized gene list, references and relevant links.
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<font size=2>'''Visit https://wikipathways.org to see the new version of WikiPathways.''' This is the "classic" version of WikiPathways will not be maintained for much longer.
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:<big>'''Data'''</big>
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</font></div>
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:Each pathway is also available for download as a GPML data file (GenMAPP Pathway Markup Language), an XML for annotated, curated pathway content. This format can be used with [http://wiki.bigcat.unimaas.nl/pathvisio/Main_Page PathVisio].
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<h2 class="frontPagePanel yellowFg">Editing Pathways</h2>
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<div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
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:In addition to editing the text fields on a given Pathway Page, this wiki also support the ability to edit the pathway itself!  Click on "EDIT" and a webstart version of PathVisio will open with the current pathway loaded. You can then add, edit or delete content from the pathway. When you save, updated version of the images, controlled text, and data files are generated and are immediately available.
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<h2 class="frontPagePanel blueFg">Find Pathways</h2>
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{|style="width:100%;" border="0" valign="top" cellspacing="2" cellpadding="1" align="center"
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|-
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|rowspan="2" align="center" style="width:25%;"|
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|align="center" valign="top"|<big>'''Search'''</big><BR>{{#searchPathwaysBox:}}
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|rowspan="2" align="center" style="width:25%;"|
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|rowspan="2" align="center" style="width:25%;"|
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|rowspan="2" align="center" valign="top"|<big>'''Browse'''</big>{{#imgLink:Browse_thumb.png|200|center||special|BrowsePathwaysPage|Browse}}
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'''Browse by species and category'''
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|rowspan="2" align="center" style="width:25%;"|
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|-
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|align="left" valign="top"|'''You can search by:'''
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*Pathway name ''(Apoptosis)''
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*Gene or protein name ''(p53)''
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*Any page content ''(cancer)''
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|-
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|colspan="7"|
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|}
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:'''Try it out in the [[Pathway:Human:Sandbox | Sandbox]] pathway!'''
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<h2 class="frontPagePanel blueFg">Get Pathways</h2>
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{|style="width:100%;" border="0" valign="top" cellspacing="2" cellpadding="1" align="center"
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|-
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|rowspan="1" align="center" style="width:25%;"|
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|align="center" valign="top"|<big>'''Download'''</big>{{#imgLink:Download_label.png|215|center|||Download_Pathways|Download}}
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'''Multiple formats and methods'''
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|rowspan="1" align="center" style="width:25%;"|
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|rowspan="1" align="center" style="width:25%;"|
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|rowspan="1" align="center" valign="top"|<big>'''Growth'''</big>{{#imgLink:Wp_growth_label.png|200|center|||WikiPathways:Statistics|Growth}}
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'''New pathways added each month'''
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|rowspan="1" align="center" style="width:25%;"|
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|-
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|colspan="7"|
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|}
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:'''Also see the [[Help:Contents |Help pages]]'''
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<h2 class="frontPagePanel blueFg">Edit Pathways</h2>
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</div>
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{|style="width:100%;" border="0" valign="top" cellspacing="2" cellpadding="1" align="center"
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|-
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|rowspan="1" align="center" style="width:25%;"|
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|align="center" valign="top"|<big>'''Learn'''</big>{{#imgLink:AcademyPath.png|200|center||external|http://academy.wikipathways.org|WikiPathways Academy}}
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'''Play with the editor tools'''
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|rowspan="1" align="center" style="width:25%;"|
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|rowspan="1" align="center" style="width:25%;"|
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|align="center" valign="top"|<big>'''Request'''</big>{{#imgLink:RequestForm2.png|210|center||external|https://github.com/wikipathways/pathway-curation-tasks/issues|Figure Conversion}}
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'''Queue figures for conversion'''
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|rowspan="1" align="center" style="width:25%;"|
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|-
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|colspan="7"|
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|}
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<div class="frontPagePanel redBg" style="width:90%;margin:1em;width=100%">
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<!-- SURVEY -->
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<h2 class="frontPagePanel redFg">''UNDER CONSTRUCTION''</h2>
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{|style="width:100%;margin-top:3em;" border="0" cellspacing="2" cellpadding="1" align="center"
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'''This site is undergoing rigorous beta testing through the end of May 2007.  We are still implementing critical features and making major changes to these pages. Nevertheless, feel free to use the site to find, edit and create pathway content.'''
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|-
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|<div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
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If you have any questions or suggestions, you can add them to the [[CommentsAndSuggestions | Comments and Suggestions]] page, or email them directly to us:
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<h2 class="frontPagePanel yellowFg">We want your feedback! A quick survey to help us focus development: [https://www.surveymonkey.com/r/wikipathways https://www.surveymonkey.com/r/wikipathways]</h2></div>
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|-
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Thomas Kelder: ''Thomas.Kelder[AT]BIGCAT.unimaas.nl''
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|colspan="7"|
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<br>
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Alex Pico: ''apico[AT]gladstone.ucsf.edu''
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Also see the [http://ftp2.bigcat.unimaas.nl/~martijn.vaniersel/mantis/my_view_page.php PathVisio bug tracker] for WikiPathays and PathVisio related bugs.
 
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<div class="frontPagePanel greenBg" style="width:90%;margin:1em;width=100%;">
 
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<h2 class="frontPagePanel greenFg">Today's featured pathway</h2>
 
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{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} }}
 
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| valign="top"|
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<div class="frontPagePanel blueBg" style="width:90%;margin:1em;width=100%;">
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<h2 class="frontPagePanel blueFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:CurrentHighlight | true}}
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<h2 class="frontPagePanel blueFg" style="margin-top:0.5em;">Updates</h2>
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* '''October 2024 Release''': [[Special:RecentPathwayChanges|167 edits]] by [[WikiPathways:Statistics#Contribution_scores|4 contributors]] and [https://www.wikipathways.org/browse/new.html 2 new pathways].
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* '''September 2024 Release''': [[Special:RecentPathwayChanges|179 edits]] by [[WikiPathways:Statistics#Contribution_scores|6 contributors]] and [https://www.wikipathways.org/browse/new.html 4 new pathways].
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* '''August 2024 Release''': [[Special:RecentPathwayChanges|1,114 edits]] by [[WikiPathways:Statistics#Contribution_scores|4 contributors]] and [https://www.wikipathways.org/browse/new.html 1 new pathway].
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* '''July 2024 Release''': [[Special:RecentPathwayChanges|53 edits]] by [[WikiPathways:Statistics#Contribution_scores|8 contributors]] and [https://www.wikipathways.org/browse/new.html 3 new pathways].
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* '''June 2024 Release''': [[Special:RecentPathwayChanges|345 edits]] by [[WikiPathways:Statistics#Contribution_scores|13 contributors]] and [https://www.wikipathways.org/browse/new.html 4 new pathways].
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* '''May 2024 Release''': [[Special:RecentPathwayChanges|110 edits]] by [[WikiPathways:Statistics#Contribution_scores|10 contributors]] and [https://www.wikipathways.org/browse/new.html 6 new pathways].
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* '''April 2024 Release''': [[Special:RecentPathwayChanges|290 edits]] by [[WikiPathways:Statistics#Contribution_scores|11 contributors]] and [https://www.wikipathways.org/browse/new.html 2 new pathways].
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* '''March 2024 Release''': [[Special:RecentPathwayChanges|542 edits]] by [[WikiPathways:Statistics#Contribution_scores|9 contributors]] and [https://www.wikipathways.org/browse/new.html 10 new pathways].
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* '''February 2024 Release''': [[Special:RecentPathwayChanges|586 edits]] by [[WikiPathways:Statistics#Contribution_scores|12 contributors]] and [https://www.wikipathways.org/browse/new.html 16 new pathways].
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&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Updates|more...]]
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<h2 class="frontPagePanel blueFg">Discussions</h2><recentChanges class="blueBg" style="border:none" namespace='90' limit='2'></recentChanges>&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Discussions|more...]]
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<h2 class="frontPagePanel blueFg">Forum</h2><rss>https://groups.google.com/group/wikipathways-discuss/feed/rss_v2_0_msgs.xml|short|max=2</rss>&nbsp;&nbsp;&nbsp;&nbsp;[http://groups.google.com/group/wikipathways-discuss Google group wikipathways-discuss]
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<h2 class="frontPagePanel greenFg">Contents</h2>
 
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[[:Category:Human|Overview of all human pathways]]
 
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[[:Category:Mouse|Overview of all mouse pathways]]
 
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[[:Category:Rat|Overview of all rat pathways]]
 
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[[:Category:Cellular Process|Cellular Process category]]
 
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[[:Category:Metabolic Process|Metabolic Process category]]
 
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[[:Category:Physiological Process|Physiological Process category]]
 
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[[:Category:Molecular Function|Molecular Function category]]
 
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<h2 class="frontPagePanel greenFg">Statistics</h2>
 
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{{ #siteStats: class="greenBg" style="border: 0;"}}
 
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Revision as of 20:08, 15 October 2024

Try the New WikiPathways

Visit https://wikipathways.org to see the new version of WikiPathways. This is the "classic" version of WikiPathways will not be maintained for much longer.

Find Pathways

Search

 Browse

Browse by species and category

You can search by:
  • Pathway name (Apoptosis)
  • Gene or protein name (p53)
  • Any page content (cancer)

Get Pathways

Download

Multiple formats and methods

Growth

New pathways added each month

Edit Pathways

Learn

Play with the editor tools

Request

Queue figures for conversion

We want your feedback! A quick survey to help us focus development: https://www.surveymonkey.com/r/wikipathways

Today's Featured Pathway

RAS and bradykinin pathways in COVID-19 (Homo sapiens)

Image does not exist
RAS and bradykinin pathways in COVID-19

Updates

    more...

Discussions

No recent changes    more...

Forum

        Google group wikipathways-discuss


    Retrieved from "https://classic.wikipathways.org/index.php/WikiPathways"
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