Help:Tutorial:Step 9
From WikiPathways
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{{TutorialVideo|FxjWo1KFX9M|360|Adding bibliography and saving the pathway}} | {{TutorialVideo|FxjWo1KFX9M|360|Adding bibliography and saving the pathway}} | ||
| - | In this step, we are going to add references to literature to the pathway. Providing your modifications to a pathway with evidence from peer-reviewed publications is important to guarantee quality of the pathway. It also enables other users to get more | + | In this step, we are going to add references to literature to the pathway. Providing your modifications to a pathway with evidence from peer-reviewed publications is important to guarantee quality of the pathway. It also enables other users to get more detailed information or background about the process you are describing in the pathway, e.g. by adding references to review articles. Here we are going to add a reference to the following review article: |
<biblio> | <biblio> | ||
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{|class=prettytable | {|class=prettytable | ||
| - | | | + | |{{TutorialImage|literature_dialog.png}} |
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==== Save the pathway to WikiPathways ==== | ==== Save the pathway to WikiPathways ==== | ||
| - | We are now done with editing the pathway, so it can be saved to WikiPathways. Press the | + | We are now done with editing the pathway, so it can be saved to WikiPathways. Press the {{TutorialImage|savetoweb.gif}} ''Save to WikiPathways'' button to save the pathway to the server. When the pathway is saved, close the applet using the {{TutorialImage|cancel.gif}} button. Your browser will be redirected to the pathway page. You will see an image of the pathway you have created and under the ''Bibliography'' section, you will see a reference to the review article you added in this step. |
| - | {{Template:TutorialHint|You can also save the pathway locally on your hard disk, using the | + | {{Template:TutorialHint|You can also save the pathway locally on your hard disk, using the {{TutorialImage|export.gif}} ''Export'' button and selecting 'gpml' as file type. Saving a pathway locally once in a while is usually a good habit to prevent losing your changes when an error occurs}}. |
{{Template:TutorialNavigate|10}} | {{Template:TutorialNavigate|10}} | ||
Revision as of 17:13, 13 May 2010
Adding bibliography
| Adding bibliography and saving the pathway |
In this step, we are going to add references to literature to the pathway. Providing your modifications to a pathway with evidence from peer-reviewed publications is important to guarantee quality of the pathway. It also enables other users to get more detailed information or background about the process you are describing in the pathway, e.g. by adding references to review articles. Here we are going to add a reference to the following review article:
- Error fetching PMID 17430084:
Add a literature reference to the pathway
To add a reference to the pathway as a whole, right click on the infobox and select Literature->add literature reference. In the dialog that appears, you can fill in the reference information manually or by querying the information from PubMed by filling in a PubMed id. In this case, the reference is available in PubMed under the id 17430084. Fill in this id in the PubMed ID field and click the Query Pubmed button. The title, year, source and author fields are now automatically filled:
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Click Ok to save the information.
Note: You can also add references to individual elements or groups, by right-clicking on the selected element(s) instead of the infobox
Save the pathway to WikiPathways
We are now done with editing the pathway, so it can be saved to WikiPathways. Press the 
Save to WikiPathways button to save the pathway to the server. When the pathway is saved, close the applet using the 
button. Your browser will be redirected to the pathway page. You will see an image of the pathway you have created and under the Bibliography section, you will see a reference to the review article you added in this step.
Note: You can also save the pathway locally on your hard disk, using the 
Export button and selecting 'gpml' as file type. Saving a pathway locally once in a while is usually a good habit to prevent losing your changes when an error occurs
