WikiPathways:Publications

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Revision as of 03:16, 1 February 2012

Pico et al. WikiPathways: Pathway Editing for the People. PLoS Biol 6(7) 2008	The first article introducing WikiPathways and wiki-based pathway editing.

Kelder et al. Mining Biological Pathways Using WikiPathways Web Services. PLoS ONE 4(7), 2009	This article describes the WikiPathways web service interface, with several use case examples.

Jennen et al. Biotransformation pathway maps in WikiPathways enable direct visualization of drug metabolism related expression changes. Drug Discov Today Aug 11, 2010	Describes the creation of several biotransformation pathways at WikiPathways, and the visualization of microarray data on these pathways.

Emig et al. AltAnalyze and DomainGraph: analyzing and visualizing exon expression data. Nucleic Acids Research, 2010, Vol. 38, No. suppl_2 W755-W762	This articles presents integrated tools for the analysis and visualization of alternative splicing data at multiple levels, including WikiPathways.

Pico et al. SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system. Nucleic Acids Research 2009 37(Database issue):D803-D809	SNPLogic provides a comprehensive SNP selection, annotation and prioritization system for design and analysis of genotyping experiments. SNPLogic integrates many different types of SNP information, including association to biological pathways.