WikiPathways:Publications
From WikiPathways
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|Kelder et al. '''Mining Biological Pathways Using WikiPathways Web Services.''' [http://www.plosone.org/article/info:doi/10.1371/journal.pone.0006447 PLoS ONE 4(7), 2009] | |Kelder et al. '''Mining Biological Pathways Using WikiPathways Web Services.''' [http://www.plosone.org/article/info:doi/10.1371/journal.pone.0006447 PLoS ONE 4(7), 2009] | ||
|This article describes the WikiPathways web service interface, with several use case examples. | |This article describes the WikiPathways web service interface, with several use case examples. | ||
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| + | |Kelder et al. '''WikiPathways: Building Research Communities on Biological Pathways.''' [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245032/ NAR, 2012] | ||
| + | |Here we describe the development of WikiPathways and the community of contributors since 2008. | ||
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== Selected citations == | == Selected citations == | ||
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|Jennen et al. '''Biotransformation pathway maps in WikiPathways enable direct visualization of drug metabolism related expression changes.''' [http://highwire.stanford.edu/cgi/medline/pmid;20708095? Drug Discov Today Aug 11, 2010] | |Jennen et al. '''Biotransformation pathway maps in WikiPathways enable direct visualization of drug metabolism related expression changes.''' [http://highwire.stanford.edu/cgi/medline/pmid;20708095? Drug Discov Today Aug 11, 2010] | ||
| - | | | + | |Describes the creation of several biotransformation pathways at WikiPathways, and the visualization of microarray data on these pathways. |
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| + | |Emig et al. '''AltAnalyze and DomainGraph: analyzing and visualizing exon expression data.''' [http://nar.oxfordjournals.org/cgi/content/full/38/suppl_2/W755 Nucleic Acids Research, 2010, Vol. 38, No. suppl_2 W755-W762] | ||
| + | |This articles presents integrated tools for the analysis and visualization of alternative splicing data at multiple levels, including WikiPathways. | ||
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| + | |Pico et al. '''SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system.''' [http://nar.oxfordjournals.org/cgi/content/full/37/suppl_1/D803 Nucleic Acids Research 2009 37(Database issue):D803-D809] | ||
| + | |SNPLogic provides a comprehensive SNP selection, annotation and prioritization system for design and analysis of genotyping experiments. SNPLogic integrates many different types of SNP information, including association to biological pathways. | ||
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[http://highwire.stanford.edu/cgi/searchresults?andorexactfulltext=and&resourcetype=1&src=ml&author1=&fulltext=wikipathways&pubdate_year=&volume=&firstpage=&disp_type= All WikiPathways citations] | [http://highwire.stanford.edu/cgi/searchresults?andorexactfulltext=and&resourcetype=1&src=ml&author1=&fulltext=wikipathways&pubdate_year=&volume=&firstpage=&disp_type= All WikiPathways citations] | ||
Current revision
About WikiPathways
| Pico et al. WikiPathways: Pathway Editing for the People. PLoS Biol 6(7) 2008 | The first article introducing WikiPathways and wiki-based pathway editing. |
| Kelder et al. Mining Biological Pathways Using WikiPathways Web Services. PLoS ONE 4(7), 2009 | This article describes the WikiPathways web service interface, with several use case examples. |
| Kelder et al. WikiPathways: Building Research Communities on Biological Pathways. NAR, 2012 | Here we describe the development of WikiPathways and the community of contributors since 2008. |
Selected citations
| Jennen et al. Biotransformation pathway maps in WikiPathways enable direct visualization of drug metabolism related expression changes. Drug Discov Today Aug 11, 2010 | Describes the creation of several biotransformation pathways at WikiPathways, and the visualization of microarray data on these pathways. |
| Emig et al. AltAnalyze and DomainGraph: analyzing and visualizing exon expression data. Nucleic Acids Research, 2010, Vol. 38, No. suppl_2 W755-W762 | This articles presents integrated tools for the analysis and visualization of alternative splicing data at multiple levels, including WikiPathways. |
| Pico et al. SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system. Nucleic Acids Research 2009 37(Database issue):D803-D809 | SNPLogic provides a comprehensive SNP selection, annotation and prioritization system for design and analysis of genotyping experiments. SNPLogic integrates many different types of SNP information, including association to biological pathways. |
