Help:WikiPathways RDF
From WikiPathways
(Difference between revisions)
(New page: The pathways from WikiPathways are now available in the [http://www.w3.org/RDF/ RDF] format. The entire collection of pathways available in WikiPathways, only the Cutrated collection and...) |
|||
| Line 1: | Line 1: | ||
| - | + | Two subsets of pathways from WikiPathways are now available in the [http://www.w3.org/RDF/ RDF] format: | |
| + | the [http://wikipathways.org/index.php?title=Special%3ABrowsePathways&browse=---&tag=Curation%3AAnalysisCollection&view=thumbs Curated] and the [http://wikipathways.org/index.php?title=Special%3ABrowsePathways&browse=---&tag=Curation%3AReactome_Approved&view=thumbs Reactome] collections. | ||
| - | + | = Download RDF = | |
| - | [http://rdf.wikipathways.org/ | + | The RDF can be [http://rdf.wikipathways.org/ downloaded]. |
| + | |||
| + | = Open PHACTS API = | ||
| + | |||
| + | The [http://www.openphacts.org/ Open PHACTS projects] provides an alternative to work with the WikiPathways RDF, as it is loaded in the data cache of Open PHACTS. The [https://dev.openphacts.org/docs Open PHACTS API] provides various queries, like "give me all targets in a pathway". It requires a [https://dev.openphacts.org/signup (free) account] to use this system. | ||
| + | |||
| + | = SPARQL Endpoint = | ||
| + | |||
| + | There is also [http://sparql.wikipathways.org/ an (experimental) SPARQL endpoint] where data queries can be done. Example queries are available from [http://www.wikipathways.org/index.php/Help:WikiPathways_Sparql_queries this page]. | ||
Revision as of 13:58, 27 January 2015
Two subsets of pathways from WikiPathways are now available in the RDF format: the Curated and the Reactome collections.
Download RDF
The RDF can be downloaded.
Open PHACTS API
The Open PHACTS projects provides an alternative to work with the WikiPathways RDF, as it is loaded in the data cache of Open PHACTS. The Open PHACTS API provides various queries, like "give me all targets in a pathway". It requires a (free) account to use this system.
SPARQL Endpoint
There is also an (experimental) SPARQL endpoint where data queries can be done. Example queries are available from this page.
