Portal:Reactome/Other
From WikiPathways
(Difference between revisions)
| Line 14: | Line 14: | ||
* Introduction to [http://www.pathvisio.org/biological-pathways-software/ PathVisio] | * Introduction to [http://www.pathvisio.org/biological-pathways-software/ PathVisio] | ||
* How to [http://www.pathvisio.org/getting-started/ started]. | * How to [http://www.pathvisio.org/getting-started/ started]. | ||
| - | * You can edit the pathways in PathVisio in the same way as in WikiPathways | + | * You can edit the pathways in PathVisio in the same way as in WikiPathways. |
| + | * Download the entire collection of human Reactome pathways [http://www.wikipathways.org//wpi/batchDownload.php?species=Homo%20sapiens&fileType=gpml&tag=Curation:Reactome_Approved here] and use them for [http://www.pathvisio.org/documentation/tutorials/tutorial-2/ pathway analysis] in PathVisio. | ||
<p> | <p> | ||
Feel free to [mailto:[email protected] contact us] directly with any questions. | Feel free to [mailto:[email protected] contact us] directly with any questions. | ||
</p> | </p> | ||
Revision as of 11:23, 30 December 2015
In collaboration with WikiPathways, we have established a custom pathway data exchange pipeline. Reactome pathways are now incorporated into WikiPathways, an open, collaborative platform dedicated to the curation of biological pathways. We encourage you to edit, curate and create pathway content here. The Reactome team will periodically assess and selectively incorporate changes back into our centralized collection.
An open source format converter has been developed that converts Reactome pathways to the GPML format. The converter is available on GitHub.
Getting Started
Use in WikiPathways
- Introduction to WikiPathways (slides)
- How to get started and use Reactome Pathways in [[Help:New_Contributor_Quickstart|quick-start pathway analysis].
- General help pages
Use in PathVisio
- Introduction to PathVisio
- How to started.
- You can edit the pathways in PathVisio in the same way as in WikiPathways.
- Download the entire collection of human Reactome pathways here and use them for pathway analysis in PathVisio.
Feel free to contact us directly with any questions.
