Help:Databases/Resources
From WikiPathways
(Difference between revisions)
(New page: * [http://ensembl.org/ Ensembl] for vertebrates, metazoa and fungi * [http://www.gramene.org/ Gramene] for plant species * [http://bacteria.ensembl.org/index.html Ensembl Genomes] for bac...) |
Current revision (09:56, 18 April 2016) (view source) (Updated the list of metabolite ID mapping sources.) |
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| - | * [http://ensembl.org/ Ensembl] for vertebrates, metazoa and | + | Gene and protein databases are built ''in sync'' with Ensembl's build releases. The BridgeDb system can generate Derby database for WikiPathways from any "ensemblized" genome database. Our current sources include: |
| - | * [http://www. | + | |
| - | * [http:// | + | * [http://ensembl.org/ Ensembl] for vertebrates and other eukaryotic species |
| + | * [http://ensemblgenomes.org/ Ensembl Genomes] for fungi, metazoa, plants, protists and bacterial collections | ||
| + | |||
| + | Small molecule, metabolite databases are generated from the following resources: | ||
| + | |||
| + | * [http://www.hmdb.ca/ HMDB] | ||
| + | * [http://www.ebi.ac.uk/chebi/ ChEBI] | ||
| + | * [http://www.wikidata.org/ Wikidata] | ||
| + | |||
| + | The interaction database are generated from the following resource: | ||
| + | |||
| + | * [http://www.rhea-db.org/ Rhea] | ||
Current revision
Gene and protein databases are built in sync with Ensembl's build releases. The BridgeDb system can generate Derby database for WikiPathways from any "ensemblized" genome database. Our current sources include:
- Ensembl for vertebrates and other eukaryotic species
- Ensembl Genomes for fungi, metazoa, plants, protists and bacterial collections
Small molecule, metabolite databases are generated from the following resources:
The interaction database are generated from the following resource:
