Help:How to create pathways

From WikiPathways

(Difference between revisions)
Jump to: navigation, search
(new page)
Current revision (23:16, 6 April 2017) (view source)
(→Creating a New Pathway)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
= Editing Tools =
+
<span style="color:#ff0000; font-size:120%">'''We are working on an update to the WikiPathways editor for creating new pathways.''' </span>
-
'''The main editor for WikiPathways is PathVisio. You can also edit  data node annotation and style directly at WikiPathways using the QuickEdit feature.'''
+
In the meantime, creating new pathways is possible using PathVisio and the WikiPathways Client Plugin. See below for details. 
-
* To edit a pathway, click the '''Edit pathway''' button on any pathway page to launch [http://www.pathvisio.org PathVisio] with the pathway in question loaded.  
+
=== Creating a New Pathway ===
-
* To make data node edits in QuickEdit, use the QuickEdit feature available in each pathway.
+
* Launch PathVisio with the WP Client Plugin.
 +
* Load the appropriate [https://www.pathvisio.org/downloads/download-bridgedbs/ species database] and the metabolite database, if applicable.  
 +
* Give your pathway name and assign a species: Select the "Pathway Information Area" (upper left corner), and in the "Properties" tab, enter a title in the "Title" field and select the correct species in the "Organism" drop-down.
 +
* Create your pathway.
 +
* Select '''Plugins -> WikiPathways -> Upload New'''. You will be asked to specify your login information and a description of the pathway.
 +
* That's it! Now go to the [[:Special:NewPathwaysPage|New Pathways]] listing to see your pathway.
-
For detailed information on how to use the above options, see [[:Help:Editing_Pathways|Editing Pathways]].
+
For more information about how to setup PathVisio with the WikiPathways Client Plugin, see [[:Help:WPClientPluginCuration| WikiPathways Client plugin documentation]].
-
 
+
-
* You can also browse WikiPathways and open and edit any pathway from within PathVisio, as well as create new pathways. For more details, see [[:Help:WPClientPluginCuration|Using the WikiPathways Client plugin]].
+
-
 
+
-
= Editing Guidelines =
+
-
 
+
-
== Best practices ==
+
-
 
+
-
* Our comprehensive [http://wikipathways.org/img_auth.php/d/d0/Instructions_for_WikiPathways_Authors.pdf Instructions for Authors] outlines how to author pathways from a beginner's perspective and includes recommendations for best practices for authoring pathways.
+
-
 
+
-
* The [[:Help:Guidelines_EditorPalette|Editor Palette guide]] describes the recommended utilization of the most commonly used elements of the WikiPathways editor palette. Examples are taken directly from the WikiPathways archives.
+
-
 
+
-
 
+
-
== General Guidelines ==
+
-
 
+
-
* Complete pathway authoring guidelines are available [[:Help:Guidelines|here]].
+

Current revision

We are working on an update to the WikiPathways editor for creating new pathways.

In the meantime, creating new pathways is possible using PathVisio and the WikiPathways Client Plugin. See below for details.

Creating a New Pathway

  • Launch PathVisio with the WP Client Plugin.
  • Load the appropriate species database and the metabolite database, if applicable.
  • Give your pathway name and assign a species: Select the "Pathway Information Area" (upper left corner), and in the "Properties" tab, enter a title in the "Title" field and select the correct species in the "Organism" drop-down.
  • Create your pathway.
  • Select Plugins -> WikiPathways -> Upload New. You will be asked to specify your login information and a description of the pathway.
  • That's it! Now go to the New Pathways listing to see your pathway.

For more information about how to setup PathVisio with the WikiPathways Client Plugin, see WikiPathways Client plugin documentation.

Retrieved from "https://classic.wikipathways.org/index.php/Help:How_to_create_pathways"
Personal tools