Portal:Semantic Web/Intro
From WikiPathways
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This portal describes the Semantic Web features of the WikiPathways databases, such as the Resource Description Framework translation, the ontology, and the new nanopublications. | This portal describes the Semantic Web features of the WikiPathways databases, such as the Resource Description Framework translation, the ontology, and the new nanopublications. | ||
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| + | Two subsets of pathways from WikiPathways are now available in the [http://www.w3.org/RDF/ RDF] format: | ||
| + | There is a subset for the WP vocabulary and a subset for the GPML vocabulary. The WP vocabulary is for the semantic information about the pathway, datanodes, and interactions and the GPML vocabulary is for the graphical information about how the pathway diagram is laid out and represented. | ||
| + | Contained in the RDF collection for both the WP and the GPML vocabulary sets, is the [http://wikipathways.org/index.php?title=Special%3ABrowsePathways&browse=---&tag=Curation%3AAnalysisCollection&view=thumbs Curated] and the [http://wikipathways.org/index.php?title=Special%3ABrowsePathways&browse=---&tag=Curation%3AReactome_Approved&view=thumbs Reactome] collections. | ||
| + | Information for the collection about the interactions is also available included in the RDF. | ||
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| + | Updates are currently not immediate. Meaning that if you add a new pathway or edit an existing one these updates will not be available in the RDF immediately. We do test builds of the RDF daily though. If you need an RDF update please contact us (on the mailing is best) and we can see what can be done. | ||
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| + | The RDF was created using these [http://vocabularies.wikipathways.org vocabularies] and database identifiers are given as [http://identifiers.org identifiers.org] URIs. | ||
Revision as of 07:22, 5 May 2017
Welcome to the WikiPathways Semantic Web Portal!
This portal describes the Semantic Web features of the WikiPathways databases, such as the Resource Description Framework translation, the ontology, and the new nanopublications.
Two subsets of pathways from WikiPathways are now available in the RDF format: There is a subset for the WP vocabulary and a subset for the GPML vocabulary. The WP vocabulary is for the semantic information about the pathway, datanodes, and interactions and the GPML vocabulary is for the graphical information about how the pathway diagram is laid out and represented.
Contained in the RDF collection for both the WP and the GPML vocabulary sets, is the Curated and the Reactome collections.
Information for the collection about the interactions is also available included in the RDF.
Updates are currently not immediate. Meaning that if you add a new pathway or edit an existing one these updates will not be available in the RDF immediately. We do test builds of the RDF daily though. If you need an RDF update please contact us (on the mailing is best) and we can see what can be done.
The RDF was created using these vocabularies and database identifiers are given as identifiers.org URIs.
