Download All Pathways

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__NOEDITSECTION__ <!-- Turn off section editing -->
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#REDIRECT [[Download_Pathways]]
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{| align="right"
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  | __TOC__
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All pathways includes non-featured pathways, but still excludes test or tutorial pathways (such as the [[Pathway:Homo sapiens:Sandbox|Sandbox pathway]]).
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== GPML ==
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Click on one of the links below to download all pathways in GPML format. You can view and edit GPML files in [http://pathvisio.org PathVisio]. You can also use GPML files for analysis in both PathVisio and [http://cytoscape.org Cytoscape].
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{|class="prettytable"
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|- valign="top"
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|<batchDownload filetype="gpml" excludetags="Curation:Tutorial;Curation:ProposedDeletion;Curation:UnderConstruction;Curation:Stub"></batchDownload>
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|}
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== BioPAX ==
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Click on one of the links below to download all pathways in [http://www.biopax.org BioPAX] level 3 format.
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{|class="prettytable"
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|- valign="top"
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|<batchDownload filetype="owl" excludetags="Curation:Tutorial;Curation:ProposedDeletion;Curation:UnderConstruction;Curation:Stub"></batchDownload>
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|}
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== Eu.Gene ==
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Click on one of the links below to download all pathways in the [http://www.duccioknights.org/eu-gene/ Eu.Gene] format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways ([http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=retrieve&db=pubmed&list_uids=17599938&dopt=AbstractPlus read more]).
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{|class="prettytable"
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|- valign="top"
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|<batchDownload filetype="pwf" excludetags="Curation:Tutorial;Curation:ProposedDeletion;Curation:UnderConstruction;Curation:Stub"></batchDownload>
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|}
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== Plain text ==
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Click on one of the links below to download all pathways in plain text format. This format contains a list of all datanodes, with the identifier in the first
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column, and the database system in the second column.
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{|class="prettytable"
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|<batchDownload filetype="txt" excludetags="Curation:Tutorial;Curation:ProposedDeletion;Curation:UnderConstruction;Curation:Stub"></batchDownload>
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|}
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== PDF ==
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Click on one of the links below to download all pathways in Portable Document Format (PDF).
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{|class="prettytable"
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|- valign="top"
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|<batchDownload filetype="pdf" excludetags="Curation:Tutorial;Curation:ProposedDeletion;Curation:UnderConstruction;Curation:Stub"></batchDownload>
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|}
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== SVG ==
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Click on one of the links below to download all pathways in [http://www.w3.org/Graphics/SVG/ SVG] format. The [http://www.w3.org/Graphics/SVG/ SVG] files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using [http://www.inkscape.org Inkscape].
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{|class="prettytable"
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|- valign="top"
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|<batchDownload filetype="svg" excludetags="Curation:Tutorial;Curation:ProposedDeletion;Curation:UnderConstruction;Curation:Stub"></batchDownload>
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|}
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== PNG ==
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Click on one of the links below to download all pathways in the Portable Network Graphics (png) format.
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{|class="prettytable"
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|- valign="top"
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|<batchDownload filetype="png" excludetags="Curation:Tutorial;Curation:ProposedDeletion;Curation:UnderConstruction;Curation:Stub"></batchDownload>
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|}
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== Flatfile ==
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Click on one of the links below to download all pathways in either a tab-delimited or HTML table format. The output includes gene, protein and small molecule contents. You can choose between "''original''" and "''mapped''" versions, which refer to whether only the original identifiers are provided or if you want them mapped to all available identifier systems.
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* Anopheles gambiae  (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Anopheles%20gambiae.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Anopheles%20gambiae.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Anopheles%20gambiae.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Anopheles%20gambiae.html html])
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* Arabidopsis thaliana  (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Arabidopsis%20thaliana.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Arabidopsis%20thaliana.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Arabidopsis%20thaliana.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Arabidopsis%20thaliana.html html])
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* Bos taurus (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Bos%20taurus.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Bos%20taurus.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Bos%20taurus.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Bos%20taurus.html html])
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* Bacillus subtilis (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Bacillus%20subtilis.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Bacillus%20subtilis.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Bacillus%20subtilis.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Bacillus%20subtilis.html html])
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* Caenorhabditis elegans (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Caenorhabditis%20elegans.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Caenorhabditis%20elegans.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Caenorhabditis%20elegans.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Caenorhabditis%20elegans.html html])
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* Canis familiaris (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Canis%20familiaris.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Canis%20familiaris.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Canis%20familiaris.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Canis%20familiaris.html html])
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* Danio rerio (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Danio%20rerio.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Danio%20rerio.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Danio%20rerio.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Danio%20rerio.html html])
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* Drosophila melanogaster (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Drosophila%20melanogaster.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Drosophila%20melanogaster.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Drosophila%20melanogaster.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Drosophila%20melanogaster.html html])
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* Equus caballus  (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Equus%20caballus.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Equus%20caballus.html html])  (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Equus%20caballus.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Equus%20caballus.html html])
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* Gallus gallus  (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Gallus%20gallus.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Gallus%20gallus.html html])  (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Gallus%20gallus.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Gallus%20gallus.html html])
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* Homo sapiens (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Homo%20sapiens.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Homo%20sapiens.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Homo%20sapiens.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Homo%20sapiens.html html])
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* Mus Musculus (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Mus%20musculus.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Mus%20musculus.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Mus%20musculus.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Mus%20musculus.html html])
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* Mycobacterium tuberculosis (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Mycobacterium%20tuberculosis.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Mycobacterium%20tuberculosis.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Mycobacterium%20tuberculosis.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Mycobacterium%20tuberculosis.html html])
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* Oryza sativa (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Oryza%20sativa.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Oryza%20sativa.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Oryza%20sativa.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Oryza%20sativa.html html])
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* Pan troglodytes (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Pan%20troglodytes.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Pan%20troglodytes.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Pan%20troglodytes.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Pan%20troglodytes.html html])
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* Rattus norvegicus (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Rattus%20norvegicus.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Rattus%20norvegicus.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Rattus%20norvegicus.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Rattus%20norvegicus.html html])
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* Saccharomyces cerevisiae (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Saccharomyces%20cerevisiae.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Saccharomyces%20cerevisiae.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Saccharomyces%20cerevisiae.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Saccharomyces%20cerevisiae.html html])
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* Sus scrofa (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Sus%20scrofa.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Sus%20scrofa.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Sus%20scrofa.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Sus%20scrofa.html html])
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* Zea mays (''original'': [http://wikipathways.org/wpi/cache/wikipathways_native_data_Zea%20mays.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_native_data_Zea%20mays.html html]) (''mapped'': [http://wikipathways.org/wpi/cache/wikipathways_data_Zea%20mays.tab tab], [http://wikipathways.org/wpi/cache/wikipathways_data_Zea%20mays.html html])
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