| invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/a/a7/WP3972_91857.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException
at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
at org.pathvisio.core.Engine.importPathway(Unknown Source)
at org.pathvisio.core.util.Converter.main(Unknown Source)
Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/a/a7/WP3972_91857.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
- 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
- 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
- 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
- 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
- 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'PDGFR-beta path...', 'https://classic...', , , 'pwthumb', '250px')
- 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP3972', '250px', , 'PDGFR-beta path...')
- 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
- 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
- 8 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
- 9 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| style="margi...')
- 10 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| style="margi...')
- 11 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| style="margi...', Object(Title), Object(ParserOptions), true, true, 97461)
- 12 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| style="margi...', Object(Title), true, true)
- 13 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| style="margi...', Object(Title), true)
- 14 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| style="margi...')
- 15 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
- 16 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
- 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
- 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
- 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
- 20 {main}
Zhang, et al. Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer
|
