Download Pathways
From WikiPathways
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== Flatfile == | == Flatfile == | ||
| - | Click on one of the links below to download all pathways in either a tab-delimited or HTML table format. The output | + | Click on one of the links below to download all pathways in either a tab-delimited or HTML table format. The output includes gene, protein and small molecule contents. |
* '''All species''' ([http://www.wikipathways.org/wpi/pathway_content_flatfile.php?output=tab tab], [http://www.wikipathways.org/wpi/pathway_content_flatfile.php?output=html html]) | * '''All species''' ([http://www.wikipathways.org/wpi/pathway_content_flatfile.php?output=tab tab], [http://www.wikipathways.org/wpi/pathway_content_flatfile.php?output=html html]) | ||
Revision as of 04:39, 9 March 2008
GPML
Click on one of the links below to download all pathways in GPML format. You can view and edit GPML files in PathVisio. From PathVisio you can also export these files to the [www.genmapp.org GenMAPP] mapp format and PDF.
- Unspecified
- Acetobacterium woodii
- Anopheles gambiae
- Arabidopsis thaliana
- Bacillus subtilis
- Beta vulgaris
- Brassica napus
- Bos taurus
- Caenorhabditis elegans
- Canis familiaris
- Clostridium thermocellum
- Caulobacter vibrioides
- Danio rerio
- Daphnia magna
- Daphnia pulex
- Drosophila melanogaster
- Escherichia coli
- Equus caballus
- Gallus gallus
- Glycine max
- Gibberella zeae
- Homo sapiens
- Hordeum vulgare
- Mus musculus
- Mycobacterium tuberculosis
- Oryza sativa
- Ovis aries
- Pan troglodytes
- Populus trichocarpa
- Rattus norvegicus
- Saccharomyces cerevisiae
- Solanum lycopersicum
- Solanum tuberosum
- Sus scrofa
- Triticum aestivum
- Vitis vinifera
- Xenopus tropicalis
- Zea mays
- Plasmodium falciparum
Eu.Gene
Click on one of the links below to download all pathways in the Eu.Gene format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways (read more).
- Unspecified
- Acetobacterium woodii
- Anopheles gambiae
- Arabidopsis thaliana
- Bacillus subtilis
- Beta vulgaris
- Brassica napus
- Bos taurus
- Caenorhabditis elegans
- Canis familiaris
- Clostridium thermocellum
- Caulobacter vibrioides
- Danio rerio
- Daphnia magna
- Daphnia pulex
- Drosophila melanogaster
- Escherichia coli
- Equus caballus
- Gallus gallus
- Glycine max
- Gibberella zeae
- Homo sapiens
- Hordeum vulgare
- Mus musculus
- Mycobacterium tuberculosis
- Oryza sativa
- Ovis aries
- Pan troglodytes
- Populus trichocarpa
- Rattus norvegicus
- Saccharomyces cerevisiae
- Solanum lycopersicum
- Solanum tuberosum
- Sus scrofa
- Triticum aestivum
- Vitis vinifera
- Xenopus tropicalis
- Zea mays
- Plasmodium falciparum
Plain text
Click on one of the links below to download all pathways in plain text format. This format contains a list of all datanodes, with the identifier in the first column, and the database system in the second column.
- Unspecified
- Acetobacterium woodii
- Anopheles gambiae
- Arabidopsis thaliana
- Bacillus subtilis
- Beta vulgaris
- Brassica napus
- Bos taurus
- Caenorhabditis elegans
- Canis familiaris
- Clostridium thermocellum
- Caulobacter vibrioides
- Danio rerio
- Daphnia magna
- Daphnia pulex
- Drosophila melanogaster
- Escherichia coli
- Equus caballus
- Gallus gallus
- Glycine max
- Gibberella zeae
- Homo sapiens
- Hordeum vulgare
- Mus musculus
- Mycobacterium tuberculosis
- Oryza sativa
- Ovis aries
- Pan troglodytes
- Populus trichocarpa
- Rattus norvegicus
- Saccharomyces cerevisiae
- Solanum lycopersicum
- Solanum tuberosum
- Sus scrofa
- Triticum aestivum
- Vitis vinifera
- Xenopus tropicalis
- Zea mays
- Plasmodium falciparum
Click on one of the links below to download all pathways in Portable Document Format (PDF).
- Unspecified
- Acetobacterium woodii
- Anopheles gambiae
- Arabidopsis thaliana
- Bacillus subtilis
- Beta vulgaris
- Brassica napus
- Bos taurus
- Caenorhabditis elegans
- Canis familiaris
- Clostridium thermocellum
- Caulobacter vibrioides
- Danio rerio
- Daphnia magna
- Daphnia pulex
- Drosophila melanogaster
- Escherichia coli
- Equus caballus
- Gallus gallus
- Glycine max
- Gibberella zeae
- Homo sapiens
- Hordeum vulgare
- Mus musculus
- Mycobacterium tuberculosis
- Oryza sativa
- Ovis aries
- Pan troglodytes
- Populus trichocarpa
- Rattus norvegicus
- Saccharomyces cerevisiae
- Solanum lycopersicum
- Solanum tuberosum
- Sus scrofa
- Triticum aestivum
- Vitis vinifera
- Xenopus tropicalis
- Zea mays
- Plasmodium falciparum
SVG
Click on one of the links below to download all pathways in SVG format. The SVG files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using Inkscape.
- Unspecified
- Acetobacterium woodii
- Anopheles gambiae
- Arabidopsis thaliana
- Bacillus subtilis
- Beta vulgaris
- Brassica napus
- Bos taurus
- Caenorhabditis elegans
- Canis familiaris
- Clostridium thermocellum
- Caulobacter vibrioides
- Danio rerio
- Daphnia magna
- Daphnia pulex
- Drosophila melanogaster
- Escherichia coli
- Equus caballus
- Gallus gallus
- Glycine max
- Gibberella zeae
- Homo sapiens
- Hordeum vulgare
- Mus musculus
- Mycobacterium tuberculosis
- Oryza sativa
- Ovis aries
- Pan troglodytes
- Populus trichocarpa
- Rattus norvegicus
- Saccharomyces cerevisiae
- Solanum lycopersicum
- Solanum tuberosum
- Sus scrofa
- Triticum aestivum
- Vitis vinifera
- Xenopus tropicalis
- Zea mays
- Plasmodium falciparum
PNG
Click on one of the links below to download all pathways in the Portable Network Graphics (png) format.
- Unspecified
- Acetobacterium woodii
- Anopheles gambiae
- Arabidopsis thaliana
- Bacillus subtilis
- Beta vulgaris
- Brassica napus
- Bos taurus
- Caenorhabditis elegans
- Canis familiaris
- Clostridium thermocellum
- Caulobacter vibrioides
- Danio rerio
- Daphnia magna
- Daphnia pulex
- Drosophila melanogaster
- Escherichia coli
- Equus caballus
- Gallus gallus
- Glycine max
- Gibberella zeae
- Homo sapiens
- Hordeum vulgare
- Mus musculus
- Mycobacterium tuberculosis
- Oryza sativa
- Ovis aries
- Pan troglodytes
- Populus trichocarpa
- Rattus norvegicus
- Saccharomyces cerevisiae
- Solanum lycopersicum
- Solanum tuberosum
- Sus scrofa
- Triticum aestivum
- Vitis vinifera
- Xenopus tropicalis
- Zea mays
- Plasmodium falciparum
Flatfile
Click on one of the links below to download all pathways in either a tab-delimited or HTML table format. The output includes gene, protein and small molecule contents.
