Help:Tutorial
From WikiPathways
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=== WikiPathways and PathVisio === | === WikiPathways and PathVisio === | ||
A set of tutorials and videos describing how to access and edit WikiPathways from PathVisio, using the WikiPathways Client Plugin: | A set of tutorials and videos describing how to access and edit WikiPathways from PathVisio, using the WikiPathways Client Plugin: | ||
| - | * [http://plugins.pathvisio.org/wp-client/tutorials/ Search and browse WikiPathways from PathVisio] | + | <!--* [http://plugins.pathvisio.org/wp-client/tutorials/ Search and browse WikiPathways from PathVisio] --> |
* [[Help:WPClientPluginCuration|Editing pathways with the WikiPathways Client Plugin for PathVisio]] | * [[Help:WPClientPluginCuration|Editing pathways with the WikiPathways Client Plugin for PathVisio]] | ||
These tutorials show you how to use WikiPathways in PathVisio for data analysis. | These tutorials show you how to use WikiPathways in PathVisio for data analysis. | ||
| - | * [ | + | * [https://pathvisio.org/tutorials/visualization.html Data visualization in PathVisio] |
| - | * [ | + | * [https://pathvisio.org/tutorials/multi-omics-tutorial.html Multi-omics data visualization with PathVisio] |
=== WikiPathways and Cytoscape === | === WikiPathways and Cytoscape === | ||
| - | [http://www.cytoscape.org Cytoscape] is a tool for network visualization and analysis. In the following tutorials we will highlight some of the Cytoscape functionality that is relevant for the pathways as used on WikiPathways. For tutorials of other Cytoscape features, visit [ | + | [http://www.cytoscape.org Cytoscape] is a tool for network visualization and analysis. In the following tutorials we will highlight some of the Cytoscape functionality that is relevant for the pathways as used on WikiPathways. For tutorials of other Cytoscape features, visit [https://github.com/cytoscape/cytoscape-tutorials/wiki Cytoscape Tutorials]. The following tutorials will show a few Cytoscape apps at work: |
| - | + | ||
* [https://cytoscape.org/cytoscape-tutorials/protocols/wikipathways-app/#/title Visualizing data on pathways in Cytoscape] | * [https://cytoscape.org/cytoscape-tutorials/protocols/wikipathways-app/#/title Visualizing data on pathways in Cytoscape] | ||
| + | * [https://cytargetlinker.github.io/cytoscape-tutorials/presentations/cytargetlinker#/title CyTargetLinker App] | ||
* [[Help:PathwayStyling|Styling WikiPathways Models in Cytoscape]] | * [[Help:PathwayStyling|Styling WikiPathways Models in Cytoscape]] | ||
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Current revision
Introductory tutorial
WikiPathways Academy will teach you everything you need to know to start contributing to WikiPathways, from how to create a WikiPathways account, how to use our editing tools, and how to make your pathway public at WikiPathways. The Academy is designed as a path, starting with basic terminology and rapidly progressing to using the authoring tools.
Access the Academy here!
Advanced tutorials
WikiPathways and PathVisio
A set of tutorials and videos describing how to access and edit WikiPathways from PathVisio, using the WikiPathways Client Plugin:
These tutorials show you how to use WikiPathways in PathVisio for data analysis.
WikiPathways and Cytoscape
Cytoscape is a tool for network visualization and analysis. In the following tutorials we will highlight some of the Cytoscape functionality that is relevant for the pathways as used on WikiPathways. For tutorials of other Cytoscape features, visit Cytoscape Tutorials. The following tutorials will show a few Cytoscape apps at work:
