Download Pathways
From WikiPathways
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Choose one of the file types below to download a set of pathways in that format. Choose between the following sets: | Choose one of the file types below to download a set of pathways in that format. Choose between the following sets: | ||
| - | ; | + | ;Categorized pathways: Only pathways that have been explicitly categorized. This includes pathways that have been carefully curated and typically excludes draft or test pathways not intended for distribution. ''(recommended)'' |
| - | ;All pathways: All pathways on the wiki, | + | ;All pathways: All pathways on the wiki, including draft or test pathways (such as the [[Pathway:Homo sapiens:Sandbox|Sandbox pathway]]). |
== GPML == | == GPML == | ||
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{|class="prettytable" | {|class="prettytable" | ||
!All pathways | !All pathways | ||
| - | ! | + | !Categorized pathways |
|- | |- | ||
|<batchDownload filetype="gpml"></batchDownload> | |<batchDownload filetype="gpml"></batchDownload> | ||
| - | |<batchDownload filetype="gpml" | + | |<batchDownload filetype="gpml" onlyCategorized="true"></batchDownload> |
|} | |} | ||
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{|class="prettytable" | {|class="prettytable" | ||
!All pathways | !All pathways | ||
| - | ! | + | !Categorized pathways |
|- | |- | ||
|<batchDownload filetype="pwf"></batchDownload> | |<batchDownload filetype="pwf"></batchDownload> | ||
| - | |<batchDownload filetype=" | + | |<batchDownload filetype="gpml" onlyCategorized="true"></batchDownload> |
|} | |} | ||
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{|class="prettytable" | {|class="prettytable" | ||
!All pathways | !All pathways | ||
| - | ! | + | !Categorized pathways |
|- | |- | ||
|<batchDownload filetype="txt"></batchDownload> | |<batchDownload filetype="txt"></batchDownload> | ||
| - | |<batchDownload filetype=" | + | |<batchDownload filetype="gpml" onlyCategorized="true"></batchDownload> |
|} | |} | ||
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{|class="prettytable" | {|class="prettytable" | ||
!All pathways | !All pathways | ||
| - | ! | + | !Categorized pathways |
|- | |- | ||
|<batchDownload filetype="pdf"></batchDownload> | |<batchDownload filetype="pdf"></batchDownload> | ||
| - | |<batchDownload filetype=" | + | |<batchDownload filetype="gpml" onlyCategorized="true"></batchDownload> |
|} | |} | ||
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{|class="prettytable" | {|class="prettytable" | ||
!All pathways | !All pathways | ||
| - | ! | + | !Categorized pathways |
|- | |- | ||
|<batchDownload filetype="svg"></batchDownload> | |<batchDownload filetype="svg"></batchDownload> | ||
| - | |<batchDownload filetype=" | + | |<batchDownload filetype="gpml" onlyCategorized="true"></batchDownload> |
|} | |} | ||
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{|class="prettytable" | {|class="prettytable" | ||
!All pathways | !All pathways | ||
| - | ! | + | !Categorized pathways |
|- | |- | ||
|<batchDownload filetype="png"></batchDownload> | |<batchDownload filetype="png"></batchDownload> | ||
| - | |<batchDownload filetype=" | + | |<batchDownload filetype="gpml" onlyCategorized="true"></batchDownload> |
|} | |} | ||
Revision as of 20:20, 25 June 2008
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Choose one of the file types below to download a set of pathways in that format. Choose between the following sets:
- Categorized pathways
- Only pathways that have been explicitly categorized. This includes pathways that have been carefully curated and typically excludes draft or test pathways not intended for distribution. (recommended)
- All pathways
- All pathways on the wiki, including draft or test pathways (such as the Sandbox pathway).
GPML
Click on one of the links below to download all pathways in GPML format. You can view and edit GPML files in PathVisio. From PathVisio you can also export these files to the [www.genmapp.org GenMAPP] mapp format and PDF.
Eu.Gene
Click on one of the links below to download all pathways in the Eu.Gene format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways (read more).
Plain text
Click on one of the links below to download all pathways in plain text format. This format contains a list of all datanodes, with the identifier in the first column, and the database system in the second column.
Click on one of the links below to download all pathways in Portable Document Format (PDF).
SVG
Click on one of the links below to download all pathways in SVG format. The SVG files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using Inkscape.
PNG
Click on one of the links below to download all pathways in the Portable Network Graphics (png) format.
Flatfile
Click on one of the links below to download all pathways in either a tab-delimited or HTML table format. The output includes gene, protein and small molecule contents.
