Help:Databases/Resources
From WikiPathways
(Difference between revisions)
(New page: * [http://ensembl.org/ Ensembl] for vertebrates, metazoa and fungi * [http://www.gramene.org/ Gramene] for plant species * [http://bacteria.ensembl.org/index.html Ensembl Genomes] for bac...) |
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| + | Gene and protein databases are built ''in sync'' with Ensembl's build releases. The BridgeDb system can generate Derby database for WikiPathways from any "ensemblized" genome database. Our current sources include: | ||
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* [http://ensembl.org/ Ensembl] for vertebrates, metazoa and fungi | * [http://ensembl.org/ Ensembl] for vertebrates, metazoa and fungi | ||
* [http://www.gramene.org/ Gramene] for plant species | * [http://www.gramene.org/ Gramene] for plant species | ||
* [http://bacteria.ensembl.org/index.html Ensembl Genomes] for bacterial collections | * [http://bacteria.ensembl.org/index.html Ensembl Genomes] for bacterial collections | ||
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| + | Small molecule, metabolite databases are generated from the following resources: | ||
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| + | * [http://www.hmdb.ca/ HMDB] | ||
Revision as of 01:25, 24 May 2009
Gene and protein databases are built in sync with Ensembl's build releases. The BridgeDb system can generate Derby database for WikiPathways from any "ensemblized" genome database. Our current sources include:
- Ensembl for vertebrates, metazoa and fungi
- Gramene for plant species
- Ensembl Genomes for bacterial collections
Small molecule, metabolite databases are generated from the following resources:
