Download All Pathways

From WikiPathways

Revision as of 17:43, 16 July 2013

The archives available for download on this page includes pathways that are non-featured pathways, but still excludes test or tutorial pathways (such as the Sandbox pathway).

GPML

Click on one of the links below to download all pathways in GPML format. You can view and edit GPML files in PathVisio. You can also use GPML files for analysis in both PathVisio and Cytoscape.

BioPAX

Click on one of the links below to download all pathways in BioPAX level 3 format.

Eu.Gene

Click on one of the links below to download all pathways in the Eu.Gene format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways (read more).

Plain text

Click on one of the links below to download all pathways in plain text format. This format contains a list of all datanodes, with the identifier in the first column, and the database system in the second column.

PDF

Click on one of the links below to download all pathways in Portable Document Format (PDF).

SVG

Click on one of the links below to download all pathways in SVG format. The SVG files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using Inkscape.

PNG

Click on one of the links below to download all pathways in the Portable Network Graphics (png) format.

Flatfile

Click on one of the links below to download all pathways in either a tab-delimited or HTML table format. The output includes gene, protein and small molecule contents. You can choose between "original" and "mapped" versions, which refer to whether only the original identifiers are provided or if you want them mapped to all available identifier systems.

• Anopheles gambiae (original: tab, html) (mapped: tab, html)
• Arabidopsis thaliana (original: tab, html) (mapped: tab, html)
• Bos taurus (original: tab, html) (mapped: tab, html)
• Bacillus subtilis (original: tab, html) (mapped: tab, html)
• Caenorhabditis elegans (original: tab, html) (mapped: tab, html)
• Canis familiaris (original: tab, html) (mapped: tab, html)
• Danio rerio (original: tab, html) (mapped: tab, html)
• Drosophila melanogaster (original: tab, html) (mapped: tab, html)
• Equus caballus (original: tab, html) (mapped: tab, html)
• Gallus gallus (original: tab, html) (mapped: tab, html)
• Homo sapiens (original: tab, html) (mapped: tab, html)
• Mus Musculus (original: tab, html) (mapped: tab, html)
• Mycobacterium tuberculosis (original: tab, html) (mapped: tab, html)
• Oryza sativa (original: tab, html) (mapped: tab, html)
• Pan troglodytes (original: tab, html) (mapped: tab, html)
• Rattus norvegicus (original: tab, html) (mapped: tab, html)
• Saccharomyces cerevisiae (original: tab, html) (mapped: tab, html)
• Sus scrofa (original: tab, html) (mapped: tab, html)
• Zea mays (original: tab, html) (mapped: tab, html)