Help:Databases/Resources

From WikiPathways

Revision as of 16:50, 3 November 2015 (view source) Jmelius (Talk | contribs) (Update Ensembl Genome content) ← Previous diff		Revision as of 13:52, 26 February 2016 (view source) Jmelius (Talk | contribs) Next diff →
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	* [http://www.hmdb.ca/ HMDB]		* [http://www.hmdb.ca/ HMDB]
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		+	The interaction database are generated from the following resource:
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		+	* [http://www.rhea-db.org/ Rhea]

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Revision as of 13:52, 26 February 2016

Gene and protein databases are built in sync with Ensembl's build releases. The BridgeDb system can generate Derby database for WikiPathways from any "ensemblized" genome database. Our current sources include:

• Ensembl for vertebrates and other eukaryotic species
• Ensembl Genomes for fungi, metazoa, plants, protists and bacterial collections

Small molecule, metabolite databases are generated from the following resources:

• HMDB

The interaction database are generated from the following resource:

• Rhea