Download Pathways
From WikiPathways
(Difference between revisions)
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__NOEDITSECTION__ <!-- Turn off section editing --> | __NOEDITSECTION__ <!-- Turn off section editing --> | ||
| - | + | {| align="right" | |
| + | | __TOC__ | ||
| + | |} | ||
| + | |||
| + | Choose one of the file types below to download a set of pathways in that format. Choose between the following sets: | ||
| + | ;Featured pathways: A subset of featured pathways, maintained by the WikiPathways community (see [[FeaturedPathways]] for more information). | ||
| + | ;All pathways: All pathways on the wiki, this may include draft or test pathways (such as the [[Pathway:Homo sapiens:Sandbox|Sandbox pathway]]). | ||
| + | |||
== GPML == | == GPML == | ||
Click on one of the links below to download all pathways in GPML format. You can view and edit GPML files in [http://pathvisio.org PathVisio]. From [http://pathvisio.org PathVisio] you can also export these files to the [www.genmapp.org GenMAPP] mapp format and [http://en.wikipedia.org/wiki/Portable_Document_Format PDF]. | Click on one of the links below to download all pathways in GPML format. You can view and edit GPML files in [http://pathvisio.org PathVisio]. From [http://pathvisio.org PathVisio] you can also export these files to the [www.genmapp.org GenMAPP] mapp format and [http://en.wikipedia.org/wiki/Portable_Document_Format PDF]. | ||
| - | <batchDownload filetype="gpml"></batchDownload> | + | {|class="prettytable" |
| + | ![[FeaturedPathways|Featured pathways]] | ||
| + | !All pathways | ||
| + | |- | ||
| + | |<batchDownload filetype="gpml"></batchDownload> | ||
| + | |<batchDownload filetype="gpml" listPage="FeaturedPathways"></batchDownload> | ||
| + | |} | ||
== Eu.Gene == | == Eu.Gene == | ||
Click on one of the links below to download all pathways in the [http://www.ducciocavalieri.org/bio.htm Eu.Gene] format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways ([http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=retrieve&db=pubmed&list_uids=17599938&dopt=AbstractPlus read more]). | Click on one of the links below to download all pathways in the [http://www.ducciocavalieri.org/bio.htm Eu.Gene] format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways ([http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=retrieve&db=pubmed&list_uids=17599938&dopt=AbstractPlus read more]). | ||
| - | <batchDownload filetype="pwf"></batchDownload> | + | {|class="prettytable" |
| + | ![[FeaturedPathways|Featured pathways]] | ||
| + | !All pathways | ||
| + | |- | ||
| + | |<batchDownload filetype="pwf"></batchDownload> | ||
| + | |<batchDownload filetype="pwf" listPage="FeaturedPathways"></batchDownload> | ||
| + | |} | ||
== Plain text == | == Plain text == | ||
| Line 15: | Line 34: | ||
column, and the database system in the second column. | column, and the database system in the second column. | ||
| - | <batchDownload filetype="txt"></batchDownload> | + | {|class="prettytable" |
| + | ![[FeaturedPathways|Featured pathways]] | ||
| + | !All pathways | ||
| + | |- | ||
| + | |<batchDownload filetype="txt"></batchDownload> | ||
| + | |<batchDownload filetype="txt" listPage="FeaturedPathways"></batchDownload> | ||
| + | |} | ||
== PDF == | == PDF == | ||
Click on one of the links below to download all pathways in Portable Document Format (PDF). | Click on one of the links below to download all pathways in Portable Document Format (PDF). | ||
| - | <batchDownload filetype="pdf"></batchDownload> | + | {|class="prettytable" |
| + | ![[FeaturedPathways|Featured pathways]] | ||
| + | !All pathways | ||
| + | |- | ||
| + | |<batchDownload filetype="pdf"></batchDownload> | ||
| + | |<batchDownload filetype="pdf" listPage="FeaturedPathways"></batchDownload> | ||
| + | |} | ||
== SVG == | == SVG == | ||
Click on one of the links below to download all pathways in [http://www.w3.org/Graphics/SVG/ SVG] format. The [http://www.w3.org/Graphics/SVG/ SVG] files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using [http://www.inkscape.org Inkscape]. | Click on one of the links below to download all pathways in [http://www.w3.org/Graphics/SVG/ SVG] format. The [http://www.w3.org/Graphics/SVG/ SVG] files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using [http://www.inkscape.org Inkscape]. | ||
| - | <batchDownload filetype="svg"></batchDownload> | + | {|class="prettytable" |
| + | ![[FeaturedPathways|Featured pathways]] | ||
| + | !All pathways | ||
| + | |- | ||
| + | |<batchDownload filetype="svg"></batchDownload> | ||
| + | |<batchDownload filetype="svg" listPage="FeaturedPathways"></batchDownload> | ||
| + | |} | ||
== PNG == | == PNG == | ||
Click on one of the links below to download all pathways in the Portable Network Graphics (png) format. | Click on one of the links below to download all pathways in the Portable Network Graphics (png) format. | ||
| - | <batchDownload filetype="png"></batchDownload> | + | |
| + | {|class="prettytable" | ||
| + | ![[FeaturedPathways|Featured pathways]] | ||
| + | !All pathways | ||
| + | |- | ||
| + | |<batchDownload filetype="png"></batchDownload> | ||
| + | |<batchDownload filetype="png" listPage="FeaturedPathways"></batchDownload> | ||
| + | |} | ||
== Flatfile == | == Flatfile == | ||
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* Caenorhabditis elegans ([http://www.wikipathways.org/wpi/pathway_content_flatfile.php?species=Caenorhabditis%20elegans&output=tab tab], [http://www.wikipathways.org/wpi/pathway_content_flatfile.php?species=Caenorhabditis%20elegans&output=html html]) | * Caenorhabditis elegans ([http://www.wikipathways.org/wpi/pathway_content_flatfile.php?species=Caenorhabditis%20elegans&output=tab tab], [http://www.wikipathways.org/wpi/pathway_content_flatfile.php?species=Caenorhabditis%20elegans&output=html html]) | ||
* Saccharomyces cerevisiae ([http://www.wikipathways.org/wpi/pathway_content_flatfile.php?species=Saccharomyces%20cerevisiae&output=tab tab], [http://www.wikipathways.org/wpi/pathway_content_flatfile.php?species=Saccharomyces%20cerevisiae&output=html html]) | * Saccharomyces cerevisiae ([http://www.wikipathways.org/wpi/pathway_content_flatfile.php?species=Saccharomyces%20cerevisiae&output=tab tab], [http://www.wikipathways.org/wpi/pathway_content_flatfile.php?species=Saccharomyces%20cerevisiae&output=html html]) | ||
| + | * Danio rerio ([http://www.wikipathways.org/wpi/pathway_content_flatfile.php?species=Danio%20rerioe&output=tab tab], [http://www.wikipathways.org/wpi/pathway_content_flatfile.php?species=Danio%20rerio&output=html html]) | ||
Revision as of 14:50, 17 May 2008
|
Choose one of the file types below to download a set of pathways in that format. Choose between the following sets:
- Featured pathways
- A subset of featured pathways, maintained by the WikiPathways community (see FeaturedPathways for more information).
- All pathways
- All pathways on the wiki, this may include draft or test pathways (such as the Sandbox pathway).
GPML
Click on one of the links below to download all pathways in GPML format. You can view and edit GPML files in PathVisio. From PathVisio you can also export these files to the [www.genmapp.org GenMAPP] mapp format and PDF.
Eu.Gene
Click on one of the links below to download all pathways in the Eu.Gene format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways (read more).
Plain text
Click on one of the links below to download all pathways in plain text format. This format contains a list of all datanodes, with the identifier in the first column, and the database system in the second column.
Click on one of the links below to download all pathways in Portable Document Format (PDF).
SVG
Click on one of the links below to download all pathways in SVG format. The SVG files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using Inkscape.
PNG
Click on one of the links below to download all pathways in the Portable Network Graphics (png) format.
Flatfile
Click on one of the links below to download all pathways in either a tab-delimited or HTML table format. The output includes gene, protein and small molecule contents.
