Help:DataVisualizationInCytoscape

From WikiPathways

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(Install Cytoscape)
(Install WP Apps)
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== Install WP Apps ==
== Install WP Apps ==
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* In Cytoscape, open the '''App Manager''' under '''Apps > App Manager'''.
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* In the '''Search''' field, type ''WikiPathways'' to search for the WikiPathways app. In the search results, select the WikiPathways app and click '''Install'''.
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* Next, find and install the BridgeDb app in the same way.
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Alternatively, Cytoscape apps can be installed directly from the Cytoscape App Store. If Cytoscape is open on your computer, you can click '''Install''' on the relevant app page, and the app will install.
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[http://apps.cytoscape.org/apps/wikipathways WikiPathways app]
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[http://apps.cytoscape.org/apps/bridgedb BridgeDb app]
== Download and prepare tutorial data ==
== Download and prepare tutorial data ==

Revision as of 22:05, 5 January 2016

UNDER CONSTRUCTION

Contents

Installation

Install Cytoscape

Install WP Apps

  • In Cytoscape, open the App Manager under Apps > App Manager.
  • In the Search field, type WikiPathways to search for the WikiPathways app. In the search results, select the WikiPathways app and click Install.
  • Next, find and install the BridgeDb app in the same way.

Alternatively, Cytoscape apps can be installed directly from the Cytoscape App Store. If Cytoscape is open on your computer, you can click Install on the relevant app page, and the app will install.

WikiPathways app

BridgeDb app

Download and prepare tutorial data

Importing and mapping data

Data import

Identifier mapping with BridgeDb

Viewing data on pathways

Open WikiPathways in Cytoscape

Visual Styles

Personal tools