Help:DataVisualizationInCytoscape
From WikiPathways
(Difference between revisions)
| Line 3: | Line 3: | ||
= Installation = | = Installation = | ||
| - | == Cytoscape == | + | === Cytoscape === |
* Download Cytoscape here: http://www.cytoscape.org/. | * Download Cytoscape here: http://www.cytoscape.org/. | ||
* Launch Cytoscape | * Launch Cytoscape | ||
| - | == WikiPathways Apps == | + | === WikiPathways Apps === |
* In Cytoscape, open the '''App Manager''' under '''Apps > App Manager'''. | * In Cytoscape, open the '''App Manager''' under '''Apps > App Manager'''. | ||
* In the '''Search''' field, type ''WikiPathways'' to search for the WikiPathways app. In the search results, select the WikiPathways app and click '''Install'''. | * In the '''Search''' field, type ''WikiPathways'' to search for the WikiPathways app. In the search results, select the WikiPathways app and click '''Install'''. | ||
Revision as of 18:43, 6 January 2016
UNDER CONSTRUCTION
Contents |
Installation
Cytoscape
- Download Cytoscape here: http://www.cytoscape.org/.
- Launch Cytoscape
WikiPathways Apps
- In Cytoscape, open the App Manager under Apps > App Manager.
- In the Search field, type WikiPathways to search for the WikiPathways app. In the search results, select the WikiPathways app and click Install.
- Next, find and install the BridgeDb app in the same way. When the installation is complete, click Close to exit the App Manager.
Alternatively, Cytoscape apps can be installed directly from the Cytoscape App Store. If Cytoscape is open on your computer, you can click Install on the relevant app page, and the app will install.
Download and prepare tutorial data
The experimental data for this tutorial can be found here: link to follow.
The data is in the form of an Excel spreadsheet, which can be read by Cytoscape.
