RNA Polymerase I Transcription (Homo sapiens)

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41086, 14172148153, 11, 18, 232, 12, 167922nucleoplasmTWISTNB ERCC3 POLR2EGTF2H5 TAF1D RBBP4 KAT2A ZNRD1 HIST1H2BK POLR2E TTF1 POLR1A HIST1H2AJ HIST1H2BD CD3EAPMe2K10-HIST1H3A HIST1H2BB RNAPolymeraseI:rRNATranscript:TTF-1:Sal Box ComplexMNAT1 RNA Polymerase Ipromoter escapecomplexPOLR2K TAF1B CD3EAP MNAT1 TAF1A TTF1 Sal Box POLR2L rDNA Promoter POLR2H TAF1A POLR2K H2AFJ POLR2E CD3EAP ZNRD1 POLR1C Me2K-10-HIST2H3A TAF1C ERCC2 H2AFB1 HIST2H2BE POLR1E HIST3H2BB H2AFB1 POLR1D Chromatin (H3K9me2,5mC):MBD2CHD4 MNAT1 TAF1A p-UBTF GTF2H2 TWISTNBHIST1H2AB POLR1D GTF2H1 HIST1H2AD PhosphorylatedUBF-1:rDNA promoterCDK7 CCNH Ac-TAF1B TAF1D H2AFX POLR1E POLR1CGTF2H3 H2AFJ H2BFS HIST1H2AJ GTF2H4 POLR2K HIST1H2BN NucleosomeERCC6 CDK7 H2AFX ERCC2 POLR1A ERCC3 rDNA PromoterUBTF DNA TAF1A HIST3H2BB TAF1A TAF1ACD3EAP GTF2H4 POLR2L POLR1E POLR1A POLR2LHDAC1 AcetylayedSL1:PhosUBF-1:rDNApromoterHIST1H2BM ZNRD1 TWISTNB POLR1C HIST1H2BJ HIST1H2BA HIST1H2BO HIST1H2BC ZNRD1 Ac-TAF1B HIST1H2BM POLR1D POLR2F TAF1D CCNH HDAC2 POLR1B H2AFV HIST1H2BK GTP GTF2H5 PTRF:PolymeraseI/Nascent Pre rRNAComplex:TTF-I:SalBoxGATAD2B POLR2L MBD2 p-UBTF POLR2K H2AFV CD3EAP p-T202, Y204 MAPK3dimerZNRD1 Acetylated SL1POLR2L TTF-I:SalBox:CSB:G9a:NuRDUBTF Sal Box UBTF HIST1H2AC HIST1H2BO GTF2H5 TBP POLR2F H2BFS Me2K10-HIST1H3A HIST1H2BN HIST1H2BH GTF2H5 rDNA Promoter HIST1H3A HIST1H2AC POLR1APOLR1E H3F3A TBP RRN3 HIST1H4 HIST2H3A HIST2H2AC Ac-TAF1B GTF2H3 GTF2H2 DNA containing 5-mC TWISTNB Ac-TAF1B TBP Active RNAPolymerase ITWISTNB GTF2H1 GATAD2A ERCC2 HIST1H4 p-T202,Y204-MAPK3 TWISTNB HIST1H2BD TWISTNB MTA1 POLR1D Me2K-10-HIST2H3A POLR1B MTA3 TAF1D GTF2H5 POLR1BUBTFGTF2H3 ERCC3 POLR2H Chromatin(H3K9me2):CBX3POLR2F HIST1H2AD elongating pre-rRNAtranscriptHIST1H2BA Ac-TAF1B POLR1C HIST2H2BE TFIIHPOLR1C UBTF HIST2H2BE HIST1H2BC POLR1B POLR1B MBD3 TAF1BSL1HIST1H4 POLR1D POLR2K UTP GTF2H2 TAF1C Sal Box HIST1H2BD HIST1H2BH POLR2H TTF1H2AFV HIST2H2AA3 HIST1H2BB HIST2H2AC ZNRD1GTF2H3 H2AFZ HIST1H2BJ HIST1H2BL HIST1H2AB RBBP7 HIST2H2AC POLR1C TAF1A POLR2K HIST1H2BM PCAFH2AFJ ATP POLR2H TBP TTF1 POLR2F CCNH H2BFS POLR2L CCNH TAF1CPTRFPOLR1A HIST1H2AB POLR2F Ac-CoACTP MNAT1 H2AFZ POLR2E p-UBTF TBP HIST1H2BL TBPGTF2H4 RRN3 EHMT2 TAF1C POLR2HPOLR2F POLR2FHIST1H2BJ POLR1D TAF1C POLR2E GTF2H1 POLR2KPOLR2L RNA Polymerase IHoloenzymeAc-TAF1B Sal BoxPOLR1A UBF-1:rDNA PromoterH2AFB1 HIST1H2BC TAF1D ERCC2 HIST1H2BH H2AFX GTF2H2 TBP POLR2E RRN3ERCC3 GTF2H1 ZNRD1 KAT2B HIST1H2AD GTF2H2 rDNA Promoter TAF1DMNAT1 NTPPOLR2H POLR1ECDK7 HIST1H2AC CD3EAP CDK7 HIST1H2AJ TAF1C CCNH ERCC3 ATPTBP POLR1DMe2K-10-H3F3A GTF2H1 ERCC2 HIST2H2AA3 CHD3 HIST1H2BL TAF1C H2AFZ TAF1D TAF1C GTF2H4 POLR2H MTA2 TTF-I:Sal BoxMe2K-10-H3F3A HIST3H2BB HIST1H2BK HIST1H2BO GTF2H4 TTF1 TAF1D HIST1H2BA POLR1B CBX3 GTF2H3 POLR1B POLR1A CD3EAP POLR1E rDNA Promoter HIST1H2BN TAF1A HIST1H2BB POLR1C POLR1E CoA-SHCDK7 RNA Polymerase ITranscriptionInitiation complexHIST2H2AA3 Sal Box POLR2E 13, 19, 2059241, 3, 11, 18, 23


Description

RNA polymerase (Pol) I (one of three eukaryotic nuclear RNA polymerases) is devoted to the transcription of the ribosomal DNA genes, which are found in multiple arrayed copies in every eukaryotic cell. These genes encode for the large ribosomal RNA precursor, which is then processed into the three largest subunits of the ribosomal RNA, the 18S, 28S, and 5.8S RNAs. In human cells the rDNA gene clusters are localized on the short arm of the five pairs of the acrocentric chromosomes. The rRNA promoter has two essential and specially spaced sequences: a CORE element and an upstream control element (UCE, also called UPE). The CORE element of the human promoter overlaps with the transcription start site, extending from 20 to 45, and is required for specific initiation of transcription.

The polymerase is a multisubunit complex, composed of two large subunits (the most conserved portions include the catalytic site that shares similarity with other eukaryotic and bacterial multisubunit RNA polymerases) and a number of smaller subunits. Under a number of experimental conditions the core is competent to mediate ribonucleic acid synthesis, in vivo however, it requires additional factors to select the appropriate template. In humans the RNA transcript (45S) is approximately 13,000 nucleotides long. Before leaving the nucleus as assembled ribosomal particles, the 45S rRNA is cleaved to give one copy each of the 28S rRNA, the 18S rRNA, and the 5.8S rRNA. Equal quantities of the three rRNAs are produced by initially transcribing them as one transcript.

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Comments

Reactome-Converter 
Pathway is converted from Reactome ID: 73864
Reactome-version 
Reactome version: 63
Reactome Author 
Reactome Author: Comai, L

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Bibliography

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  1. Zhai W, Comai L.; ''Repression of RNA polymerase I transcription by the tumor suppressor p53.''; PubMed Europe PMC Scholia
  2. Schultz P, Fribourg S, Poterszman A, Mallouh V, Moras D, Egly JM.; ''Molecular structure of human TFIIH.''; PubMed Europe PMC Scholia
  3. Beckmann H, Chen JL, O'Brien T, Tjian R.; ''Coactivator and promoter-selective properties of RNA polymerase I TAFs.''; PubMed Europe PMC Scholia
  4. Comai L.; ''Mechanism of RNA polymerase I transcription.''; PubMed Europe PMC Scholia
  5. Gorski JJ, Pathak S, Panov K, Kasciukovic T, Panova T, Russell J, Zomerdijk JC.; ''A novel TBP-associated factor of SL1 functions in RNA polymerase I transcription.''; PubMed Europe PMC Scholia
  6. Jansa P, Mason SW, Hoffmann-Rohrer U, Grummt I.; ''Cloning and functional characterization of PTRF, a novel protein which induces dissociation of paused ternary transcription complexes.''; PubMed Europe PMC Scholia
  7. Hirschler-Laszkiewicz I, Cavanaugh AH, Mirza A, Lun M, Hu Q, Smink T, Rothblum LI.; ''Rrn3 becomes inactivated in the process of ribosomal DNA transcription.''; PubMed Europe PMC Scholia
  8. Ghoshal K, Majumder S, Datta J, Motiwala T, Bai S, Sharma SM, Frankel W, Jacob ST.; ''Role of human ribosomal RNA (rRNA) promoter methylation and of methyl-CpG-binding protein MBD2 in the suppression of rRNA gene expression.''; PubMed Europe PMC Scholia
  9. Rossignol M, Kolb-Cheynel I, Egly JM.; ''Substrate specificity of the cdk-activating kinase (CAK) is altered upon association with TFIIH.''; PubMed Europe PMC Scholia
  10. Giglia-Mari G, Giglia-Mari G, Coin F, Ranish JA, Hoogstraten D, Theil A, Wijgers N, Jaspers NG, Raams A, Argentini M, van der Spek PJ, Botta E, Stefanini M, Egly JM, Aebersold R, Hoeijmakers JH, Vermeulen W.; ''A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A.''; PubMed Europe PMC Scholia
  11. Tuan JC, Zhai W, Comai L.; ''Recruitment of TATA-binding protein-TAFI complex SL1 to the human ribosomal DNA promoter is mediated by the carboxy-terminal activation domain of upstream binding factor (UBF) and is regulated by UBF phosphorylation.''; PubMed Europe PMC Scholia
  12. Reiter A, Hamperl S, Seitz H, Merkl P, Perez-Fernandez J, Williams L, Gerber J, Németh A, Léger I, Gadal O, Milkereit P, Griesenbeck J, Tschochner H.; ''The Reb1-homologue Ydr026c/Nsi1 is required for efficient RNA polymerase I termination in yeast.''; PubMed Europe PMC Scholia
  13. Comai L, Tanese N, Tjian R.; ''The TATA-binding protein and associated factors are integral components of the RNA polymerase I transcription factor, SL1.''; PubMed Europe PMC Scholia
  14. Jantzen HM, Admon A, Bell SP, Tjian R.; ''Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins.''; PubMed Europe PMC Scholia
  15. Bell SP, Pikaard CS, Reeder RH, Tjian R.; ''Molecular mechanisms governing species-specific transcription of ribosomal RNA.''; PubMed Europe PMC Scholia
  16. Russell J, Zomerdijk JC.; ''The RNA polymerase I transcription machinery.''; PubMed Europe PMC Scholia
  17. Pijnappel WP, Kolkman A, Baltissen MP, Heck AJ, Timmers HM.; ''Quantitative mass spectrometry of TATA binding protein-containing complexes and subunit phosphorylations during the cell cycle.''; PubMed Europe PMC Scholia
  18. Stefanovsky VY, Pelletier G, Hannan R, Gagnon-Kugler T, Rothblum LI, Moss T.; ''An immediate response of ribosomal transcription to growth factor stimulation in mammals is mediated by ERK phosphorylation of UBF.''; PubMed Europe PMC Scholia
  19. Comai L, Zomerdijk JC, Beckmann H, Zhou S, Admon A, Tjian R.; ''Reconstitution of transcription factor SL1: exclusive binding of TBP by SL1 or TFIID subunits.''; PubMed Europe PMC Scholia
  20. Pilsl M, Crucifix C, Papai G, Krupp F, Steinbauer R, Griesenbeck J, Milkereit P, Tschochner H, Schultz P.; ''Structure of the initiation-competent RNA polymerase I and its implication for transcription.''; PubMed Europe PMC Scholia
  21. Muth V, Nadaud S, Grummt I, Voit R.; ''Acetylation of TAF(I)68, a subunit of TIF-IB/SL1, activates RNA polymerase I transcription.''; PubMed Europe PMC Scholia
  22. Evers R, Grummt I.; ''Molecular coevolution of mammalian ribosomal gene terminator sequences and the transcription termination factor TTF-I.''; PubMed Europe PMC Scholia
  23. Engel C, Plitzko J, Cramer P.; ''RNA polymerase I-Rrn3 complex at 4.8 Å resolution.''; PubMed Europe PMC Scholia
  24. Yuan X, Zhao J, Zentgraf H, Hoffmann-Rohrer U, Grummt I.; ''Multiple interactions between RNA polymerase I, TIF-IA and TAF(I) subunits regulate preinitiation complex assembly at the ribosomal gene promoter.''; PubMed Europe PMC Scholia

History

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CompareRevisionActionTimeUserComment
115046view16:58, 25 January 2021ReactomeTeamReactome version 75
113490view11:56, 2 November 2020ReactomeTeamReactome version 74
112690view16:08, 9 October 2020ReactomeTeamReactome version 73
101607view11:47, 1 November 2018ReactomeTeamreactome version 66
101144view21:33, 31 October 2018ReactomeTeamreactome version 65
100672view20:06, 31 October 2018ReactomeTeamreactome version 64
100222view16:51, 31 October 2018ReactomeTeamreactome version 63
99773view15:17, 31 October 2018ReactomeTeamreactome version 62 (2nd attempt)
99331view12:47, 31 October 2018ReactomeTeamreactome version 62
93416view11:23, 9 August 2017ReactomeTeamNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
Rna
ATP MetaboliteCHEBI:15422 (ChEBI)
ATPMetaboliteCHEBI:15422 (ChEBI)
Ac-CoAMetaboliteCHEBI:15351 (ChEBI)
Ac-TAF1B ProteinQ53T94 (Uniprot-TrEMBL)
Acetylated SL1ComplexR-HSA-73693 (Reactome)
Acetylayed

SL1:PhosUBF-1:rDNA

promoter
ComplexR-HSA-73694 (Reactome)
Active RNA Polymerase IComplexR-HSA-73715 (Reactome)
CBX3 ProteinQ13185 (Uniprot-TrEMBL)
CCNH ProteinP51946 (Uniprot-TrEMBL)
CD3EAP ProteinO15446 (Uniprot-TrEMBL)
CD3EAPProteinO15446 (Uniprot-TrEMBL)
CDK7 ProteinP50613 (Uniprot-TrEMBL)
CHD3 ProteinQ12873 (Uniprot-TrEMBL)
CHD4 ProteinQ14839 (Uniprot-TrEMBL)
CTP MetaboliteCHEBI:17677 (ChEBI)
Chromatin (H3K9me2):CBX3ComplexR-HSA-427344 (Reactome)
Chromatin (H3K9me2, 5mC):MBD2ComplexR-HSA-427343 (Reactome)
CoA-SHMetaboliteCHEBI:15346 (ChEBI)
DNA R-ALL-29428 (Reactome)
DNA containing 5-mC R-ALL-212172 (Reactome)
EHMT2 ProteinQ96KQ7 (Uniprot-TrEMBL)
ERCC2 ProteinP18074 (Uniprot-TrEMBL)
ERCC3 ProteinP19447 (Uniprot-TrEMBL)
ERCC6 ProteinQ03468 (Uniprot-TrEMBL)
GATAD2A ProteinQ86YP4 (Uniprot-TrEMBL)
GATAD2B ProteinQ8WXI9 (Uniprot-TrEMBL)
GTF2H1 ProteinP32780 (Uniprot-TrEMBL)
GTF2H2 ProteinQ13888 (Uniprot-TrEMBL)
GTF2H3 ProteinQ13889 (Uniprot-TrEMBL)
GTF2H4 ProteinQ92759 (Uniprot-TrEMBL)
GTF2H5 ProteinQ6ZYL4 (Uniprot-TrEMBL)
GTP MetaboliteCHEBI:15996 (ChEBI)
H2AFB1 ProteinP0C5Y9 (Uniprot-TrEMBL)
H2AFJ ProteinQ9BTM1 (Uniprot-TrEMBL)
H2AFV ProteinQ71UI9 (Uniprot-TrEMBL)
H2AFX ProteinP16104 (Uniprot-TrEMBL)
H2AFZ ProteinP0C0S5 (Uniprot-TrEMBL)
H2BFS ProteinP57053 (Uniprot-TrEMBL)
H3F3A ProteinP84243 (Uniprot-TrEMBL)
HDAC1 ProteinQ13547 (Uniprot-TrEMBL)
HDAC2 ProteinQ92769 (Uniprot-TrEMBL)
HIST1H2AB ProteinP04908 (Uniprot-TrEMBL)
HIST1H2AC ProteinQ93077 (Uniprot-TrEMBL)
HIST1H2AD ProteinP20671 (Uniprot-TrEMBL)
HIST1H2AJ ProteinQ99878 (Uniprot-TrEMBL)
HIST1H2BA ProteinQ96A08 (Uniprot-TrEMBL)
HIST1H2BB ProteinP33778 (Uniprot-TrEMBL)
HIST1H2BC ProteinP62807 (Uniprot-TrEMBL)
HIST1H2BD ProteinP58876 (Uniprot-TrEMBL)
HIST1H2BH ProteinQ93079 (Uniprot-TrEMBL)
HIST1H2BJ ProteinP06899 (Uniprot-TrEMBL)
HIST1H2BK ProteinO60814 (Uniprot-TrEMBL)
HIST1H2BL ProteinQ99880 (Uniprot-TrEMBL)
HIST1H2BM ProteinQ99879 (Uniprot-TrEMBL)
HIST1H2BN ProteinQ99877 (Uniprot-TrEMBL)
HIST1H2BO ProteinP23527 (Uniprot-TrEMBL)
HIST1H3A ProteinP68431 (Uniprot-TrEMBL)
HIST1H4 ProteinP62805 (Uniprot-TrEMBL)
HIST2H2AA3 ProteinQ6FI13 (Uniprot-TrEMBL)
HIST2H2AC ProteinQ16777 (Uniprot-TrEMBL)
HIST2H2BE ProteinQ16778 (Uniprot-TrEMBL)
HIST2H3A ProteinQ71DI3 (Uniprot-TrEMBL)
HIST3H2BB ProteinQ8N257 (Uniprot-TrEMBL)
KAT2A ProteinQ92830 (Uniprot-TrEMBL)
KAT2B ProteinQ92831 (Uniprot-TrEMBL)
MBD2 ProteinQ9UBB5 (Uniprot-TrEMBL)
MBD3 ProteinO95983 (Uniprot-TrEMBL)
MNAT1 ProteinP51948 (Uniprot-TrEMBL)
MTA1 ProteinQ13330 (Uniprot-TrEMBL)
MTA2 ProteinO94776 (Uniprot-TrEMBL)
MTA3 ProteinQ9BTC8 (Uniprot-TrEMBL)
Me2K-10-H3F3A ProteinP84243 (Uniprot-TrEMBL)
Me2K-10-HIST2H3A ProteinQ71DI3 (Uniprot-TrEMBL)
Me2K10-HIST1H3A ProteinP68431 (Uniprot-TrEMBL)
NTPComplexR-ALL-30595 (Reactome)
NucleosomeComplexR-HSA-427402 (Reactome)
PCAFComplexR-HSA-350078 (Reactome)
POLR1A ProteinO95602 (Uniprot-TrEMBL)
POLR1AProteinO95602 (Uniprot-TrEMBL)
POLR1B ProteinQ9H9Y6 (Uniprot-TrEMBL)
POLR1BProteinQ9H9Y6 (Uniprot-TrEMBL)
POLR1C ProteinO15160 (Uniprot-TrEMBL)
POLR1CProteinO15160 (Uniprot-TrEMBL)
POLR1D ProteinQ9Y2S0 (Uniprot-TrEMBL)
POLR1DProteinQ9Y2S0 (Uniprot-TrEMBL)
POLR1E ProteinQ9GZS1 (Uniprot-TrEMBL)
POLR1EProteinQ9GZS1 (Uniprot-TrEMBL)
POLR2E ProteinP19388 (Uniprot-TrEMBL)
POLR2EProteinP19388 (Uniprot-TrEMBL)
POLR2F ProteinP61218 (Uniprot-TrEMBL)
POLR2FProteinP61218 (Uniprot-TrEMBL)
POLR2H ProteinP52434 (Uniprot-TrEMBL)
POLR2HProteinP52434 (Uniprot-TrEMBL)
POLR2K ProteinP53803 (Uniprot-TrEMBL)
POLR2KProteinP53803 (Uniprot-TrEMBL)
POLR2L ProteinP62875 (Uniprot-TrEMBL)
POLR2LProteinP62875 (Uniprot-TrEMBL)
PTRF:Polymerase

I/Nascent Pre rRNA Complex:TTF-I:Sal

Box
ComplexR-HSA-74982 (Reactome)
PTRFProteinQ6NZI2 (Uniprot-TrEMBL)
Phosphorylated UBF-1:rDNA promoterComplexR-HSA-73685 (Reactome)
RBBP4 ProteinQ09028 (Uniprot-TrEMBL)
RBBP7 ProteinQ16576 (Uniprot-TrEMBL)
RNA

Polymerase

I:rRNATranscript:TTF-1:Sal Box Complex
ComplexR-HSA-74979 (Reactome)
RNA Polymerase I HoloenzymeComplexR-HSA-73859 (Reactome)
RNA Polymerase I

Transcription

Initiation complex
ComplexR-HSA-73716 (Reactome)
RNA Polymerase I

promoter escape

complex
ComplexR-HSA-73717 (Reactome)
RRN3 ProteinQ9NYV6 (Uniprot-TrEMBL)
RRN3ProteinQ9NYV6 (Uniprot-TrEMBL)
SL1ComplexR-HSA-73692 (Reactome)
Sal Box ProteinENSG00000266658 (Ensembl) Named the "Sal Box" as a Sal I restriction endonuclease site is located within the sequence. An 18 base pair sequence element found in multiple copies in the nontranscribed spacer downstream of the 18S rRNA coding region. This element provides the termination signal for ribosomal gene transcription.
Sal BoxGeneProductENSG00000266658 (Ensembl) Named the "Sal Box" as a Sal I restriction endonuclease site is located within the sequence. An 18 base pair sequence element found in multiple copies in the nontranscribed spacer downstream of the 18S rRNA coding region. This element provides the termination signal for ribosomal gene transcription.
TAF1A ProteinQ15573 (Uniprot-TrEMBL)
TAF1AProteinQ15573 (Uniprot-TrEMBL)
TAF1B ProteinQ53T94 (Uniprot-TrEMBL)
TAF1BProteinQ53T94 (Uniprot-TrEMBL)
TAF1C ProteinQ15572 (Uniprot-TrEMBL)
TAF1CProteinQ15572 (Uniprot-TrEMBL)
TAF1D ProteinQ9H5J8 (Uniprot-TrEMBL)
TAF1DProteinQ9H5J8 (Uniprot-TrEMBL)
TBP ProteinP20226 (Uniprot-TrEMBL)
TBPProteinP20226 (Uniprot-TrEMBL)
TFIIHComplexR-HSA-109634 (Reactome)
TTF-I:Sal Box:CSB:G9a:NuRDComplexR-HSA-427352 (Reactome)
TTF-I:Sal BoxComplexR-HSA-74977 (Reactome)
TTF1 ProteinQ15361 (Uniprot-TrEMBL)
TTF1ProteinQ15361 (Uniprot-TrEMBL)
TWISTNB ProteinQ3B726 (Uniprot-TrEMBL)
TWISTNBProteinQ3B726 (Uniprot-TrEMBL)
UBF-1:rDNA PromoterComplexR-HSA-73684 (Reactome)
UBTF ProteinP17480 (Uniprot-TrEMBL)
UBTFProteinP17480 (Uniprot-TrEMBL)
UTP MetaboliteCHEBI:15713 (ChEBI)
ZNRD1 ProteinQ9P1U0 (Uniprot-TrEMBL)
ZNRD1ProteinQ9P1U0 (Uniprot-TrEMBL)
elongating pre-rRNA transcriptR-ALL-74985 (Reactome)
nascent pre-rRNA transcript Protein
p-T202, Y204 MAPK3 dimerComplexR-HSA-109845 (Reactome)
p-T202,Y204-MAPK3 ProteinP27361 (Uniprot-TrEMBL)
p-UBTF ProteinP17480 (Uniprot-TrEMBL)
rDNA Promoter R-ALL-73682 (Reactome)
rDNA PromoterR-ALL-73682 (Reactome)

Annotated Interactions

View all...
SourceTargetTypeDatabase referenceComment
ATPR-HSA-73722 (Reactome)
Ac-CoAR-HSA-73736 (Reactome)
Acetylated SL1ArrowR-HSA-73736 (Reactome)
Acetylated SL1R-HSA-73739 (Reactome)
Acetylayed

SL1:PhosUBF-1:rDNA

promoter
ArrowR-HSA-73739 (Reactome)
Acetylayed

SL1:PhosUBF-1:rDNA

promoter
R-HSA-73758 (Reactome)
Active RNA Polymerase IArrowR-HSA-73757 (Reactome)
Active RNA Polymerase IR-HSA-73758 (Reactome)
ArrowR-HSA-74992 (Reactome)
CD3EAPR-HSA-73865 (Reactome)
Chromatin (H3K9me2):CBX3ArrowR-HSA-74986 (Reactome)
Chromatin (H3K9me2, 5mC):MBD2TBarR-HSA-73718 (Reactome)
CoA-SHArrowR-HSA-73736 (Reactome)
NTPR-HSA-74986 (Reactome)
NucleosomeTBarR-HSA-73718 (Reactome)
PCAFmim-catalysisR-HSA-73736 (Reactome)
POLR1AR-HSA-73865 (Reactome)
POLR1BR-HSA-73865 (Reactome)
POLR1CR-HSA-73865 (Reactome)
POLR1DR-HSA-73865 (Reactome)
POLR1ER-HSA-73865 (Reactome)
POLR2ER-HSA-73865 (Reactome)
POLR2FR-HSA-73865 (Reactome)
POLR2HR-HSA-73865 (Reactome)
POLR2KR-HSA-73865 (Reactome)
POLR2LR-HSA-73865 (Reactome)
PTRF:Polymerase

I/Nascent Pre rRNA Complex:TTF-I:Sal

Box
ArrowR-HSA-74993 (Reactome)
PTRF:Polymerase

I/Nascent Pre rRNA Complex:TTF-I:Sal

Box
R-HSA-74992 (Reactome)
PTRFArrowR-HSA-74992 (Reactome)
PTRFR-HSA-74993 (Reactome)
Phosphorylated UBF-1:rDNA promoterArrowR-HSA-73722 (Reactome)
Phosphorylated UBF-1:rDNA promoterR-HSA-73739 (Reactome)
R-HSA-73718 (Reactome) UBF-1 binds directly to the CORE and UCE elements of the ribosomal DNA promoter. This binding is mediated by the HMG boxes (primarily HMG box1). Phosphorylation may play a role in the modulation of UBF's DNA binding activity, as well as in subsequent steps. UBF is thought to bind DNA in a conformation specific manner (as opposed to a sequence specific manner). The binding of UBF to the minor groove of DNA induces strong DNA bending.
R-HSA-73722 (Reactome) Phosphorylation of UBF-1, bound to the promoter, activates UBF-1 and recruits SL1, and eventually polymerase. This phosphorylation of UBF-1 by Erk1, has been shown to both weaken the binding of UBF-1 to DNA and to activate transcription (the authors of the paper showing these data suggest that loosening the binding of UBF-1 with the promoter may somehow promote transcription initiation). Though not definitively worked out phosphorylation of UBF-1 by Erk1 plays a role in the activation of the UBF-1:rDNA complex.
R-HSA-73729 (Reactome) Human SL1 is a four subunit complex composed of the TATA-binding protein (TBP) and three TBP-associated factors (TAFs): TAF(1)110, TAF(1)63, and TAF(1)48. Note that none of these three TAFs for Pol I show any homology to the Pol II or Pol III TAFs. TAFs SL1 is a species specific factor.
R-HSA-73736 (Reactome) Acetylation of the TAFI63 subunit of SL1 by PCAF stimulates the association of TAFI63 with DNA and stimulates pol I transcription in vitro. Conversely, deacetylation by the NAD+-dependent deacetylase Sir2 represses pol I transcription.
R-HSA-73739 (Reactome) Human SL1 does not bind to DNA itself, rather it is recruited to the rDNA promoter through a physical interaction with UBF-1. Phosphorylation of UBF-1 within the carboxy-terminal region is required for SL1 binding. SL1 consists of TATA-binding protein (TBP) and three associated factors (TAFIs). SL1 has no sequence-specific DNA binding activity its recruitment to the promoter being mediated by specific interactions with UBF. Once bound the SL1 complex makes direct contact with the DNA promoter and guides promoter-specific initiation.

Studies to identify the mechanistic relationship between SL1 and UBF-1 have indicated that the interaction between UBF-1 and SL1 is regulated by tumor suppressor proteins such as Rb and P53, although it has also been proposed that Rb prevents UBF-1 from binding to DNA itself.

R-HSA-73757 (Reactome) After the assembly of the RNA Polymerase I Holoenzyme, Rrn3 binding occurs (Engel et al. 2016, Pilsl et al. 2016).
R-HSA-73758 (Reactome) Composed of Acetylated SL1, phosphorylated UBF-1 bound the rDNA promoter as well as the active RNA polymerase holoenzyme, rrn3 and TFIIH the transcription initiation complex is complete. The assembly picture is incomplete, as the point at which TFIIH joins the complex is unknown, though by the time that this complex is formed TFIIH is present (it has been included at this step for completeness). This forms the transcriptionally active enzyme, that is capable of initiating transcription from the rDNA promoter.
R-HSA-73769 (Reactome) Upon transcription initiation it is thought that RRN3 is inactivated and dissociates from the Loss of Rrn3 from the RNA Polymerase I promoter escape complex. SL1 and UBF are thought to remain bound to the promoter for multiple rounds of transcription initiation
R-HSA-73865 (Reactome) At the beginning of this reaction, 1 molecule of each of POLR1A (RPA190, A194), POLR1B (RPA135), POLR1C (RPA40), POLR1D (RPA19), POLR1E (PAF53, RPA49), POLR2E (RPB5), POLR2F (RPB6), POLR2H (RPB8), POLR2K (RPABC4, RPB12), POLR2L (RPB10), TWISTNB (RPA43), CD3EAP (CAST, PAF49), and ZNRD1 (RPA12) are present. At the end of this reaction, 1 molecule of 'RNA Polymerase I Holoenzyme (Human)' is present.
This reaction takes place in the 'nucleolus'.

R-HSA-74986 (Reactome) At the beginning of this reaction, 1 molecule of 'elongating pre-rRNA transcript', and 1 molecule of 'NTP' are present. At the end of this reaction, 1 molecule of 'elongating pre-rRNA transcript' is present.

This reaction takes place in the 'nucleolus' and is mediated by the 'DNA-directed RNA polymerase activity' of 'RNA Polymerase I promoter escape complex'.

R-HSA-74987 (Reactome) As inferred from mouse cell models, the Transcription termination factor (TTF1, also known as TTF-1 and TTF-I) binds an 18 base pair sequence element known as the Sal Box found in multiple copies in the nontranscribed spacer downstream of the 28S rRNA coding region. This element is the termination signal for ribosomal gene transcription. Binding of TTF1 mediates the pausing of the elongating transcription complex. TTF1 has a relatively low affinity for purified DNA but binds cooperatively to chromatin. Oligomers of TTF1 interact in trans to bind adjacent intergenic regions and form loops of the rDNA. Binding of TTF1 to the Sal Box is also influenced by interaction of TTF1 with TIP5 and possibly other proteins.
R-HSA-74992 (Reactome) PTRF binds the quaternary complex and mediates the dissociation of paused complex. PTRF interacts with the RNA polymerase I largest subunit (p194), TTF-I and the U-rich 3' end of the nascent pre-rRNA.
R-HSA-74993 (Reactome) Dissociation of paused ternary complexes requires the Polymerase I-transcript release factor (PTRF) a leucine zipper protein. PTRF is capable of dissociating ternary Pol I transcription complexes, interacting with both TTF-I and Pol I to mediate the release of both Pol I and nascent transcripts from the template.
R-HSA-74994 (Reactome) The Polymerase I promoter escape complex/with the now complete nascent pre rRNA transcript pauses at the TTF-I bound Sal Box (Reiter et al.2012).
RNA

Polymerase

I:rRNATranscript:TTF-1:Sal Box Complex
ArrowR-HSA-74994 (Reactome)
RNA

Polymerase

I:rRNATranscript:TTF-1:Sal Box Complex
R-HSA-74993 (Reactome)
RNA Polymerase I HoloenzymeArrowR-HSA-73865 (Reactome)
RNA Polymerase I HoloenzymeR-HSA-73757 (Reactome)
RNA Polymerase I

Transcription

Initiation complex
ArrowR-HSA-73758 (Reactome)
RNA Polymerase I

Transcription

Initiation complex
R-HSA-73769 (Reactome)
RNA Polymerase I

promoter escape

complex
ArrowR-HSA-73769 (Reactome)
RNA Polymerase I

promoter escape

complex
ArrowR-HSA-74992 (Reactome)
RNA Polymerase I

promoter escape

complex
R-HSA-74994 (Reactome)
RNA Polymerase I

promoter escape

complex
mim-catalysisR-HSA-74986 (Reactome)
RRN3ArrowR-HSA-73769 (Reactome)
RRN3R-HSA-73757 (Reactome)
SL1ArrowR-HSA-73729 (Reactome)
SL1R-HSA-73736 (Reactome)
Sal BoxR-HSA-74987 (Reactome)
TAF1AR-HSA-73729 (Reactome)
TAF1BR-HSA-73729 (Reactome)
TAF1CR-HSA-73729 (Reactome)
TAF1DR-HSA-73729 (Reactome)
TBPR-HSA-73729 (Reactome)
TFIIHR-HSA-73758 (Reactome)
TTF-I:Sal Box:CSB:G9a:NuRDArrowR-HSA-73739 (Reactome)
TTF-I:Sal BoxArrowR-HSA-74987 (Reactome)
TTF-I:Sal BoxR-HSA-74994 (Reactome)
TTF1ArrowR-HSA-74992 (Reactome)
TTF1R-HSA-74987 (Reactome)
TWISTNBR-HSA-73865 (Reactome)
UBF-1:rDNA PromoterArrowR-HSA-73718 (Reactome)
UBF-1:rDNA PromoterR-HSA-73722 (Reactome)
UBTFR-HSA-73718 (Reactome)
ZNRD1R-HSA-73865 (Reactome)
elongating pre-rRNA transcriptArrowR-HSA-74986 (Reactome)
elongating pre-rRNA transcriptR-HSA-74986 (Reactome)
p-T202, Y204 MAPK3 dimermim-catalysisR-HSA-73722 (Reactome)
rDNA PromoterR-HSA-73718 (Reactome)
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