Nephrin family interactions (Homo sapiens)

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Bibliography

1. Tryggvason K.; ''Unraveling the mechanisms of glomerular ultrafiltration: nephrin, a key component of the slit diaphragm.''; PubMed Europe PMC Scholia
2. Garg P, Verma R, Nihalani D, Johnstone DB, Holzman LB.; ''Neph1 cooperates with nephrin to transduce a signal that induces actin polymerization.''; PubMed Europe PMC Scholia
3. Li H, Lemay S, Aoudjit L, Kawachi H, Takano T.; ''SRC-family kinase Fyn phosphorylates the cytoplasmic domain of nephrin and modulates its interaction with podocin.''; PubMed Europe PMC Scholia
4. Neumann-Haefelin E, Kramer-Zucker A, Slanchev K, Hartleben B, Noutsou F, Martin K, Wanner N, Ritter A, Gödel M, Pagel P, Fu X, Müller A, Baumeister R, Walz G, Huber TB.; ''A model organism approach: defining the role of Neph proteins as regulators of neuron and kidney morphogenesis.''; PubMed Europe PMC Scholia
5. Huber TB, Kottgen M, Schilling B, Walz G, Benzing T.; ''Interaction with podocin facilitates nephrin signaling.''; PubMed Europe PMC Scholia
6. Schwarz K, Simons M, Reiser J, Saleem MA, Faul C, Kriz W, Shaw AS, Holzman LB, Mundel P.; ''Podocin, a raft-associated component of the glomerular slit diaphragm, interacts with CD2AP and nephrin.''; PubMed Europe PMC Scholia
7. Zhu J, Sun N, Aoudjit L, Li H, Kawachi H, Lemay S, Takano T.; ''Nephrin mediates actin reorganization via phosphoinositide 3-kinase in podocytes.''; PubMed Europe PMC Scholia
8. Lehtonen S, Ryan JJ, Kudlicka K, Iino N, Zhou H, Farquhar MG.; ''Cell junction-associated proteins IQGAP1, MAGI-2, CASK, spectrins, and alpha-actinin are components of the nephrin multiprotein complex.''; PubMed Europe PMC Scholia
9. Lehtonen S, Lehtonen E, Kudlicka K, Holthöfer H, Farquhar MG.; ''Nephrin forms a complex with adherens junction proteins and CASK in podocytes and in Madin-Darby canine kidney cells expressing nephrin.''; PubMed Europe PMC Scholia
10. Huber TB, Benzing T.; ''The slit diaphragm: a signaling platform to regulate podocyte function.''; PubMed Europe PMC Scholia
11. Ruotsalainen V, Ljungberg P, Wartiovaara J, Lenkkeri U, Kestilä M, Jalanko H, Holmberg C, Tryggvason K.; ''Nephrin is specifically located at the slit diaphragm of glomerular podocytes.''; PubMed Europe PMC Scholia
12. Verma R, Wharram B, Kovari I, Kunkel R, Nihalani D, Wary KK, Wiggins RC, Killen P, Holzman LB.; ''Fyn binds to and phosphorylates the kidney slit diaphragm component Nephrin.''; PubMed Europe PMC Scholia
13. Rohatgi R, Nollau P, Ho HY, Kirschner MW, Mayer BJ.; ''Nck and phosphatidylinositol 4,5-bisphosphate synergistically activate actin polymerization through the N-WASP-Arp2/3 pathway.''; PubMed Europe PMC Scholia
14. Verma R, Kovari I, Soofi A, Nihalani D, Patrie K, Holzman LB.; ''Nephrin ectodomain engagement results in Src kinase activation, nephrin phosphorylation, Nck recruitment, and actin polymerization.''; PubMed Europe PMC Scholia
15. Tryggvason K, Patrakka J, Wartiovaara J.; ''Hereditary proteinuria syndromes and mechanisms of proteinuria.''; PubMed Europe PMC Scholia
16. Lahdenperä J, Kilpeläinen P, Liu XL, Pikkarainen T, Reponen P, Ruotsalainen V, Tryggvason K.; ''Clustering-induced tyrosine phosphorylation of nephrin by Src family kinases.''; PubMed Europe PMC Scholia
17. Huber TB, Hartleben B, Kim J, Schmidts M, Schermer B, Keil A, Egger L, Lecha RL, Borner C, Pavenstädt H, Shaw AS, Walz G, Benzing T.; ''Nephrin and CD2AP associate with phosphoinositide 3-OH kinase and stimulate AKT-dependent signaling.''; PubMed Europe PMC Scholia
18. Liu XL, Kilpeläinen P, Hellman U, Sun Y, Wartiovaara J, Morgunova E, Pikkarainen T, Yan K, Jonsson AP, Tryggvason K.; ''Characterization of the interactions of the nephrin intracellular domain.''; PubMed Europe PMC Scholia
19. Liu G, Kaw B, Kurfis J, Rahmanuddin S, Kanwar YS, Chugh SS.; ''Neph1 and nephrin interaction in the slit diaphragm is an important determinant of glomerular permeability.''; PubMed Europe PMC Scholia
20. Jones N, New LA, Fortino MA, Eremina V, Ruston J, Blasutig IM, Aoudjit L, Zou Y, Liu X, Yu GL, Takano T, Quaggin SE, Pawson T.; ''Nck proteins maintain the adult glomerular filtration barrier.''; PubMed Europe PMC Scholia
21. Zenker M, Machuca E, Antignac C.; ''Genetics of nephrotic syndrome: new insights into molecules acting at the glomerular filtration barrier.''; PubMed Europe PMC Scholia
22. Khoshnoodi J, Sigmundsson K, Ofverstedt LG, Skoglund U, Obrink B, Wartiovaara J, Tryggvason K.; ''Nephrin promotes cell-cell adhesion through homophilic interactions.''; PubMed Europe PMC Scholia
23. Patrakka J, Tryggvason K.; ''Nephrin--a unique structural and signaling protein of the kidney filter.''; PubMed Europe PMC Scholia
24. Tryggvason K, Pikkarainen T, Patrakka J.; ''Nck links nephrin to actin in kidney podocytes.''; PubMed Europe PMC Scholia
25. Gerke P, Sellin L, Kretz O, Petraschka D, Zentgraf H, Benzing T, Walz G.; ''NEPH2 is located at the glomerular slit diaphragm, interacts with nephrin and is cleaved from podocytes by metalloproteinases.''; PubMed Europe PMC Scholia
26. Wartiovaara J, Ofverstedt LG, Khoshnoodi J, Zhang J, Mäkelä E, Sandin S, Ruotsalainen V, Cheng RH, Jalanko H, Skoglund U, Tryggvason K.; ''Nephrin strands contribute to a porous slit diaphragm scaffold as revealed by electron tomography.''; PubMed Europe PMC Scholia
27. Aaltonen P, Holthöfer H.; ''The nephrin-based slit diaphragm: new insight into the signalling platform identifies targets for therapy.''; PubMed Europe PMC Scholia
28. Huber TB, Simons M, Hartleben B, Sernetz L, Schmidts M, Gundlach E, Saleem MA, Walz G, Benzing T.; ''Molecular basis of the functional podocin-nephrin complex: mutations in the NPHS2 gene disrupt nephrin targeting to lipid raft microdomains.''; PubMed Europe PMC Scholia
29. Jones N, Blasutig IM, Eremina V, Ruston JM, Bladt F, Li H, Huang H, Larose L, Li SS, Takano T, Quaggin SE, Pawson T.; ''Nck adaptor proteins link nephrin to the actin cytoskeleton of kidney podocytes.''; PubMed Europe PMC Scholia
30. Li S, Wang Q, Chakladar A, Bronson RT, Bernards A.; ''Gastric hyperplasia in mice lacking the putative Cdc42 effector IQGAP1.''; PubMed Europe PMC Scholia
31. Gerke P, Huber TB, Sellin L, Benzing T, Walz G.; ''Homodimerization and heterodimerization of the glomerular podocyte proteins nephrin and NEPH1.''; PubMed Europe PMC Scholia

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External references

DataNodes

Name	Type	Database reference	Comment
ADP	Metabolite	CHEBI:16761 (ChEBI)
ATP	Metabolite	CHEBI:15422 (ChEBI)
Alpha-actinin		R-HSA-451402 (Reactome)
CASK	Protein	O14936 (Uniprot-TrEMBL)
CASK	Protein	O14936 (Uniprot-TrEMBL)
CD2AP	Protein	Q9Y5K6 (Uniprot-TrEMBL)
CD2AP:p-Nephrin:Fyn:NEPH1	Complex	R-HSA-373680 (Reactome)
CD2AP	Protein	Q9Y5K6 (Uniprot-TrEMBL)
FYN	Protein	P06241 (Uniprot-TrEMBL)
FYN	Protein	P06241 (Uniprot-TrEMBL)
IQGAP1	Protein	P46940 (Uniprot-TrEMBL)
IQGAP1	Protein	P46940 (Uniprot-TrEMBL)
KIRREL	Protein	Q96J84 (Uniprot-TrEMBL)
KIRREL2	Protein	Q6UWL6 (Uniprot-TrEMBL)
KIRREL2, KIRREL3	Complex	R-HSA-936056 (Reactome)
KIRREL3	Protein	Q8IZU9 (Uniprot-TrEMBL)
KIRREL	Protein	Q96J84 (Uniprot-TrEMBL)
MAGI2	Protein	Q86UL8 (Uniprot-TrEMBL)
N-WASP	Protein	O00401 (Uniprot-TrEMBL)
N-WASP	Protein	O00401 (Uniprot-TrEMBL)
NCK1	Protein	P16333 (Uniprot-TrEMBL)
NCK1,NCK2	Complex	R-HSA-381949 (Reactome)
NCK2	Protein	O43639 (Uniprot-TrEMBL)
NEPH1:p-Nephrin:Fyn:NCK:N-WASP	Complex	R-HSA-532605 (Reactome)
NEPH1:p-Nephrin:Fyn:NCK	Complex	R-HSA-373677 (Reactome)
NPHS1 dimer:KIRREL2,KIRREL3	Complex	R-HSA-451719 (Reactome)
NPHS1 dimer:KIRREL:FYN	Complex	R-HSA-8981533 (Reactome)
NPHS1	Protein	O60500 (Uniprot-TrEMBL)
NPHS1 dimer:KIRREL	Complex	R-HSA-373679 (Reactome)
NPHS1 dimer	Complex	R-HSA-373670 (Reactome)
NPHS1	Protein	O60500 (Uniprot-TrEMBL)
Nephrin dimer:adherins junction-associated proteins	Complex	R-HSA-451387 (Reactome)
Nephrin dimer:CASK	Complex	R-HSA-373681 (Reactome)
Nephrin dimer:IQGAP1	Complex	R-HSA-451398 (Reactome)
PI3K:CD2AP:p-Nephrin:Fyn:NEPH1	Complex	R-HSA-451720 (Reactome)
PI3K	Complex	R-HSA-74693 (Reactome)
PIK3CA	Protein	P42336 (Uniprot-TrEMBL)
PIK3CB	Protein	P42338 (Uniprot-TrEMBL)
PIK3R1	Protein	P27986 (Uniprot-TrEMBL)
PIK3R2	Protein	O00459 (Uniprot-TrEMBL)
Podocin oligomer		R-HSA-451771 (Reactome)
Podocin oligomer		R-HSA-451771 (Reactome)
Podocin:p-Nephrin:Fyn:NEPH1	Complex	R-HSA-373691 (Reactome)
SPTAN1	Protein	Q13813 (Uniprot-TrEMBL)
SPTBN1	Protein	Q01082 (Uniprot-TrEMBL)
adherens junction-associated proteins	Complex	R-HSA-451386 (Reactome)
p-Y1158,Y1176,Y1193,Y1217-NPHS1	Protein	O60500 (Uniprot-TrEMBL)
p-Y1158,Y1176,Y1193,Y1217-NPHS1:KIRREL:FYN	Complex	R-HSA-374555 (Reactome)

Annotated Interactions

Source	Target	Type	Database reference	Comment
	ADP	Arrow	R-HSA-373747 (Reactome)
ATP			R-HSA-373747 (Reactome)
CASK			R-HSA-373722 (Reactome)
	CD2AP:p-Nephrin:Fyn:NEPH1	Arrow	R-HSA-373727 (Reactome)
CD2AP:p-Nephrin:Fyn:NEPH1			R-HSA-451758 (Reactome)
CD2AP			R-HSA-373727 (Reactome)
FYN			R-HSA-8981534 (Reactome)
IQGAP1			R-HSA-451377 (Reactome)
KIRREL2, KIRREL3			R-HSA-451757 (Reactome)
KIRREL			R-HSA-373714 (Reactome)
N-WASP			R-HSA-532603 (Reactome)
NCK1,NCK2			R-HSA-373724 (Reactome)
	NEPH1:p-Nephrin:Fyn:NCK:N-WASP	Arrow	R-HSA-532603 (Reactome)
	NEPH1:p-Nephrin:Fyn:NCK	Arrow	R-HSA-373724 (Reactome)
NEPH1:p-Nephrin:Fyn:NCK			R-HSA-532603 (Reactome)
	NPHS1 dimer:KIRREL2,KIRREL3	Arrow	R-HSA-451757 (Reactome)
	NPHS1 dimer:KIRREL:FYN	Arrow	R-HSA-8981534 (Reactome)
NPHS1 dimer:KIRREL:FYN			R-HSA-373747 (Reactome)
NPHS1 dimer:KIRREL:FYN		mim-catalysis	R-HSA-373747 (Reactome)
	NPHS1 dimer:KIRREL	Arrow	R-HSA-373714 (Reactome)
NPHS1 dimer:KIRREL			R-HSA-373722 (Reactome)
NPHS1 dimer:KIRREL			R-HSA-451377 (Reactome)
NPHS1 dimer:KIRREL			R-HSA-451403 (Reactome)
NPHS1 dimer:KIRREL			R-HSA-8981534 (Reactome)
	NPHS1 dimer	Arrow	R-HSA-373732 (Reactome)
NPHS1 dimer			R-HSA-373714 (Reactome)
NPHS1 dimer			R-HSA-451757 (Reactome)
NPHS1			R-HSA-373732 (Reactome)
	Nephrin dimer:adherins junction-associated proteins	Arrow	R-HSA-451403 (Reactome)
	Nephrin dimer:CASK	Arrow	R-HSA-373722 (Reactome)
	Nephrin dimer:IQGAP1	Arrow	R-HSA-451377 (Reactome)
	PI3K:CD2AP:p-Nephrin:Fyn:NEPH1	Arrow	R-HSA-451758 (Reactome)
PI3K			R-HSA-451758 (Reactome)
Podocin oligomer			R-HSA-373734 (Reactome)
	Podocin:p-Nephrin:Fyn:NEPH1	Arrow	R-HSA-373734 (Reactome)
			R-HSA-373714 (Reactome)	Nephrin (NPHS1) forms heterodimers with KIRREL (NEPH1) molecules in a cis-configuration within the slit diaphram (SD). This heterologous protein protein interaction seems to be an important factor in maintaining the normal permeability characteristics of the slit diaphragm by relaying signals from the extracellular side into the podocyte. NPHS1:KIRREL heterodimer formation is highly conserved from C.elegans to human and serves different functions in different species and different tissues.
			R-HSA-373722 (Reactome)	CASK is a scaffolding protein that participates in maintenance of polarized epithelial cell architecture by linking membrane proteins and signaling molecules to the actin cytoskeleton. CASK is identified as one of the binding partners of nephrin and this interaction likely plays an important role in establishing the structural integrity and functional properties of the glomerular slit diaphragm.
			R-HSA-373724 (Reactome)	Nephrin tyrosine phosphorylation regulates podocyte cell morphology via NCK adaptor proteins. NCK via its SH2 domain interacts with the three phosphotyrosines (1176, 1193 and 1217) on nephrin, and through its SH3 domain can recruit several other proteins involved in the regulation of the actin cytoskeleton such as N WASP, WIP, ARP2/3 and PAK to the slit diaphragm. The importance of this mechanism is the maintenance of the filtration barrier. When rapid actin polymerization and cytoskeletal reorganization is needed, for example during development or injury and repair, the level of nephrin phosphorylation increases and leads to recruitment of NCK and its downstream effectors to the cytoplasmic side of the slit diaphragm.
			R-HSA-373727 (Reactome)	CD2-associated protein (CD2AP) is an adapter molecule of the immunoglobulin superfamily that was first identified as an SH3-containing protein that binds to the cytoplasmic domain of CD2. In the glomerulus, CD2AP is located in the cytoplasm beneath the slit-diaphragm, where it binds to the cytoplasmic domain of nephrin. CD2AP acts as a linker protein and may be involved in connecting nephrin to the actin cytoskeleton in podocytes, although direct evidence of this is still lacking. Interaction with CD2AP might be important in the steady-state situation. In addition CD2AP can facilitate nephrin-induced PI3K-AKT signaling, a pathway that has been shown to be important for nephrin-mediated actin reorganization in podocytes and protection of podocytes from apoptosis.
			R-HSA-373732 (Reactome)	Foot processes are slender, actin rich protrusions of the cytoplasm that are anchored to the glomerular basement membrane. Adjacent foot processes are laterally interconnected by a highly specialized cell-cell junction, the slit diaphragm (SD). Nephrin (NPHS1) is the critical structural component within the slit diaphragm. Nephrin molecules of adjacent foot processes from neighboring podocytes interact with each other in the middle of the slit diaphragm forming a filter with a zipper like structure and with pores just the size of albumin on both sides of the midline density.
			R-HSA-373734 (Reactome)	NPHS2 encodes podocin, a protein exclusively expressed in podocytes in developing and mature glomeruli. Podocin is a member of the stomatin protein family with a short N terminal domain, a membrane-anchoring region, and a cytosolic C-terminal domain. Podocin accumulates in an oligomeric form in lipid rafts of the slit diaphragm. The C-terminal domain of Podocin binds to the cytoplasmic domain of nephrin thus it may function as a scaffolding protein connecting nephrin with the actin cytoskeleton. Beside nephrin it was shown that podocin also interacts with several other SD proteins, hence forming functional microdomains
			R-HSA-373747 (Reactome)	Nephrin has eight putative phosphorylation sites, which nicely match with substrate sites for the Src kinase family. Nephrin, is tyrosine phosphorylated by the Src family tyrosine kinase, Fyn in developing and injured podocytes. Phosphorylation of three of these tyrosines (1176, 1193 and 1217) results in the formation of a preferred binding motif (YDXV) for the SH2 domain of the adaptor protein NCK, which is one of the bricks linking Nephrin to the cytoskeleton. Phosphorylation of tyrosine 1158 results in a binding motif for the p85 regulatory subunit of PI3K.
			R-HSA-451377 (Reactome)	IQGAP1, an effector protein of the small GTPases Rac1 and Cdc42 and a putative regulator of cell-cell adherens junctions, is expressed in podocytes at significant levels, and located in the immediate vicinity of the slit diaphragm. IQGAP1 is identified as one of the interacting partners of nephrin. This interaction takes place strictly and specifically between the C-terminal half of the nephrin intracellular domain and IQGAP1. IQGAP1 knock-out mouse does not have any obvious nephrotic phenotype, hence IQGAP1 function can either be substituted by other proteins or its role in vivo is much less important than that attributed to it from cell culture experiments.
			R-HSA-451403 (Reactome)	The nephrin-slit diaphragm protein complex contains a group of scaffolding proteins that function to connect junctional membrane proteins to the actin cytoskeleton and signaling cascades. By mass spectrometry four of the proteins identified, alphaII spectrin, betaII spectrin, alpha-actinin, and IQGAP1, represent adherens junction-associated proteins, and two, MAGI-2/S-SCAM and CASK, represent MAGUK family scaffolding proteins that associate with Ig superfamily proteins. The presence of these proteins in slit diaphragms and their association with nephrin suggests that they may form a scaffolding protein complex in the podocyte slit diaphragm and thus contribute to the regulation of ultrafiltration by binding slit membrane proteins and establishing their cytosolic connections.
			R-HSA-451757 (Reactome)	NEPH2 and NEPH3 specifically interact with the extracellular domains of nephrin in the slit diaphragm of podocytes and potentially other tissues as well (eg. brain). The functional significance of these interactions is unknown.
			R-HSA-451758 (Reactome)	The regulatory p85 subunit of PI3K recognizes and binds to both phosphorylated nephrin and its binding partner, CD2AP. By mutation analysis, nephrin Y1158 was shown to be necessary for the interaction. This interaction allows the catalytic subunit p110 to act on phospholipids of the inner leaflet of the cell membrane. This leads to downstream phosphorylation and inactivation of the apoptotic factor Bad via the serine-threonine kinase AKT.
			R-HSA-532603 (Reactome)	The NCK adaptor protein binds to a proline rich region on WASP and N-WASP through its SH3 domains and has been implicated in the recruitment of WASP/N-WASP to sites of tyrosine phosphorylation. NCK stimulates actin nucleation by N WASP:Arp2/3 complexes. Recruitment of NCK to phosphorylated YDxV sites on nephrin could therefore directly control the cytoskeletal actin architecture of podocytes.
			R-HSA-8981534 (Reactome)	Nephrin (NPHS1) is tyrosine phosphorylated by the Src family tyrosine kinase FYN in developing and injured podocytes. Phosphorylation of three tyrosines (1176, 1193 and 1217) results in the formation of a preferred binding motif (YDXV) for the SH2 domain of the adaptor protein NCK, which links Nephrin to the cytoskeleton. Phosphorylation of NPHS1 tyrosine 1158 results in a binding motif for the p85 regulatory subunit of PI3K.
adherens junction-associated proteins			R-HSA-451403 (Reactome)
	p-Y1158,Y1176,Y1193,Y1217-NPHS1:KIRREL:FYN	Arrow	R-HSA-373747 (Reactome)
p-Y1158,Y1176,Y1193,Y1217-NPHS1:KIRREL:FYN			R-HSA-373724 (Reactome)
p-Y1158,Y1176,Y1193,Y1217-NPHS1:KIRREL:FYN			R-HSA-373727 (Reactome)
p-Y1158,Y1176,Y1193,Y1217-NPHS1:KIRREL:FYN			R-HSA-373734 (Reactome)