Primary carbon metabolism (Populus trichocarpa)

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1, 2PLASMA MEMBRANELumenstromatransketolasephosphoribulokinaseRuBisCO subunit bindingferredoxin NADP + reductasesedoheptulose-1,7-bisphosphatecarbonic acidRuBisCOPSI reaction center subunit IIIribulose-5-phosphate-3-epimeraseATPase betafructose-1,6-bisphosphatesedoheptulose-1,7-bisphosphataseglyceraldehyde-3-phosphate dehydrogenasephosphoglycerate kinaseO2-evolving Enhancer 1light-harvesting complex II protein Lhcb1PSI reaction center subunit IIdihydroxy-acetone phosphatelight-harvesting complex I protein Lhca1carbonic anhydraseO2-evolving Enhancerfructose-1,6-bisphosphatasefructose-6-phosphateerythrose-4-phosphatexylulose-5-phosphatelight harvesting complex I protein Lhca3carbon dioxidetriose phosphate isomeraseNADP MDHNADP malic enzymeRuBisCO activasefructose-1,6-bisphosphataseO2-evolving Enhancer 2ADPATPNADP+NADPH3-phosphoglycerateglyceraldehyde-3-phosphateribose-5-phosphatealdolaseribulose-1,5-bisphosphateribulose-5-phosphatepyruvateacetyl-CoAmalateglucosesucrosefructose-6-phosphatecitric acidcis-aconitic acidisocitric acid2-oxoglutaric acidsuccinic acidsuccinyl-CoAfructose 1,6 Bisphosphateglyceraldehyde 3-phosphate1,3-bisphosphoglycerate3-phosphoglyceric acid2-phosphoglyceric acidphosphoenolpyruvic acidpyruvateoxaloacetic acidmalic acidoxaloacetic acidDHAPglucose-6-phosphatefructose-1,6-bisphosphate aldolaseglyceraldehyde-3-phosphate dehydrogenaseCYTOSOLCHOLOROPLASTstarch1,3-bisphosphoglyceratetransketolasealdolasesedoheptulose-7-phosphateribulose-5-phosphate epimeraseADPATPNADP+NADPHADPATPfumaric acidMITOCHONDRIONNAD+NADHNAD+NADHNAD+NADHNAD+NADHADPATPFAD+FADHADPATPADPATPADPATPNAD+NADHADPATP


Description

This plant pathway represents the primary carbon metabolism in plants including Calvin cycle (WP2860) and Photosynthetic electron transport chain (WP2861)(chloroplast), Glycolysis (WP2862) (cytosol) and Krebs cycle (WP2863) (mitochondrion).

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Quality Tags

Ontology Terms

 

Bibliography

  1. Lincoln Taiz, Eduardo Zeiger; ''Plant Physiology''; Sinauer Associates, third edition, 2002
  2. Bohler S, Sergeant K, Lefèvre I, Jolivet Y, Hoffmann L, Renaut J, Dizengremel P, Hausman JF; ''Differential impact of chronic ozone exposure on expanding and fully expanded poplar leaves.''; Tree Physiol, 2010 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
125290view17:15, 31 January 2023LarsgwAdd ISBN to reference
124811view21:46, 11 December 2022AlexanderPicofixed citations
124782view06:36, 11 December 2022AlexanderPicofixed citations
124470view13:50, 30 October 2022EgonwReplaced with an equivalent identifier in Wikidata
117379view10:28, 21 May 2021EweitzModified title
102770view21:08, 23 January 2019MaintBotFixed the casing of two ChEBI identifiers (prefix should be CHEBI: instead of ChEBI:)
88346view16:11, 1 August 2016FehrhartOntology Term : 'classic metabolic pathway' added !
82863view15:54, 10 November 2015JmeliusUpdate outdated id
78463view10:27, 7 January 2015MaintBotadded missing graphIds
78142view13:15, 5 December 2014AnweshaFixed metabolite and protein annotations
77847view08:36, 22 October 2014SbohlerPeriodical save, work in progress
77846view08:25, 22 October 2014SbohlerAdded NAD(H), FAD(H), and ADP/ATP couples to Krebs cycle
77742view13:03, 16 October 2014SbohlerModified description
77732view12:41, 16 October 2014AnweshaAdded literature refernce and the organelle mitochondrion
77722view12:21, 16 October 2014SbohlerModified description
77721view12:18, 16 October 2014SbohlerAdded book reference
77719view12:04, 16 October 2014AnweshaNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
1,3-bisphosphoglycerateMetaboliteC00236 (KEGG Compound)
2-oxoglutaric acidMetaboliteCHEBI:30915 (ChEBI)
2-phosphoglyceric acidMetaboliteCHEBI:24344 (ChEBI)
3-phosphoglycerateMetaboliteCHEBI:17050 (ChEBI)
3-phosphoglyceric acidMetaboliteCHEBI:17050 (ChEBI)
ADPMetaboliteCHEBI:16761 (ChEBI)
ATPMetaboliteCHEBI:15422 (ChEBI)
ATPase betaProteinQ8MCB3 (Uniprot-TrEMBL)
DHAPMetaboliteCHEBI:16108 (ChEBI)
FAD+MetaboliteCHEBI:18009 (ChEBI)
FADHMetaboliteCHEBI:16474 (ChEBI)
NAD+MetaboliteCHEBI:18009 (ChEBI)
NADHMetaboliteCHEBI:16474 (ChEBI)
NADP MDHProteinA9P8R3 (Uniprot-TrEMBL)
NADP malic enzymeProteinB9ILT5 (Uniprot-TrEMBL)
NADP+MetaboliteCHEBI:18009 (ChEBI)
NADPHMetaboliteCHEBI:16474 (ChEBI)
O2-evolving Enhancer 1ProteinB3VY32 (Uniprot-TrEMBL)
O2-evolving Enhancer 2ProteinA9PHM0 (Uniprot-TrEMBL)
O2-evolving EnhancerProteinA9PFR3 (Uniprot-TrEMBL)
PSI reaction center subunit IIProteinA9PJR8 (Uniprot-TrEMBL)
PSI reaction center subunit IIIProteinPOPTR_0002s25510 (Ensembl)
RuBisCO activaseProteinA9PFQ2 (Uniprot-TrEMBL)
RuBisCO subunit bindingProteinB9HQD5 (Uniprot-TrEMBL)
RuBisCOProteinB9GXY0 (Uniprot-TrEMBL)
acetyl-CoAMetaboliteCHEBI:15351 (ChEBI)
aldolaseProteinA9PJC9 (Uniprot-TrEMBL)
carbon dioxideMetaboliteCHEBI:16526 (ChEBI)
carbonic acidMetaboliteCHEBI:28976 (ChEBI)
carbonic anhydraseProteinQ41088 (Uniprot-TrEMBL)
cis-aconitic acidMetaboliteCHEBI:32805 (ChEBI)
citric acidMetaboliteCHEBI:30769 (ChEBI)
dihydroxy-acetone phosphateMetaboliteCHEBI:16108 (ChEBI)
erythrose-4-phosphateMetaboliteCHEBI:48153 (ChEBI)
ferredoxin NADP + reductaseProteinP00455 (Uniprot-TrEMBL)
fructose 1,6 BisphosphateMetaboliteCHEBI:28013 (ChEBI)
fructose-1,6-bisphosphataseProtein3.1.3.11 (Enzyme Nomenclature)
fructose-1,6-bisphosphataseProteinB9H7R7 (Uniprot-TrEMBL)
fructose-1,6-bisphosphate aldolaseProteinA9PJC9 (Uniprot-TrEMBL)
fructose-1,6-bisphosphateMetaboliteCHEBI:32966 (ChEBI)
fructose-6-phosphateMetaboliteCHEBI:78697 (ChEBI)
fumaric acidMetaboliteCHEBI:18012 (ChEBI)
glucose-6-phosphateMetaboliteCHEBI:14314 (ChEBI)
glucoseMetaboliteCHEBI:17234 (ChEBI)
glyceraldehyde 3-phosphateMetaboliteCHEBI:17138 (ChEBI)
glyceraldehyde-3-phosphate dehydrogenaseProteinQ9SNX8 (Uniprot-TrEMBL)
glyceraldehyde-3-phosphateMetaboliteCHEBI:17050 (ChEBI)
isocitric acidMetaboliteCHEBI:30887 (ChEBI)
light harvesting complex I protein Lhca3ProteinA9PK62 (Uniprot-TrEMBL)
light-harvesting complex I protein Lhca1ProteinA9PJ58 (Uniprot-TrEMBL)
light-harvesting complex II protein Lhcb1ProteinA9PJK6 (Uniprot-TrEMBL)
malateMetaboliteCHEBI:15361 (ChEBI)
malic acidMetaboliteCHEBI:6650 (ChEBI)
oxaloacetic acidMetaboliteCHEBI:30744 (ChEBI)
phosphoenolpyruvic acidMetaboliteCHEBI:44897 (ChEBI)
phosphoglycerate kinaseProteinB9HY29 (Uniprot-TrEMBL)
phosphoribulokinaseProteinB9GZT5 (Uniprot-TrEMBL)
pyruvateMetaboliteCHEBI:15361 (ChEBI)
ribose-5-phosphateMetaboliteCHEBI:17050 (ChEBI)
ribulose-1,5-bisphosphateMetaboliteCHEBI:17050 (ChEBI)
ribulose-5-phosphate epimeraseProtein5.3.1.6 (Enzyme Nomenclature)
ribulose-5-phosphate-3-epimeraseProteinA9PIC8 (Uniprot-TrEMBL)
ribulose-5-phosphateMetaboliteCHEBI:17050 (ChEBI)
sedoheptulose-1,7-bisphosphataseProtein3.1.3.37 (Enzyme Nomenclature)
sedoheptulose-1,7-bisphosphateMetaboliteCHEBI:17969 (ChEBI)
sedoheptulose-7-phosphateMetaboliteCHEBI:15721 (ChEBI)
starchMetaboliteCHEBI:28017 (ChEBI)
succinic acidMetaboliteCHEBI:15741 (ChEBI)
succinyl-CoAMetaboliteCHEBI:15380 (ChEBI)
sucroseMetaboliteCHEBI:17992 (ChEBI)
transketolaseProteinB9GPE7 (Uniprot-TrEMBL)
triose phosphate isomeraseProteinA9PE68 (Uniprot-TrEMBL)
xylulose-5-phosphateMetaboliteCHEBI:16332 (ChEBI)

Annotated Interactions

No annotated interactions

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