Glutamate biosynthesis superpathway (Saccharomyces cerevisiae)

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Description

The utilization of ammonia to synthesize glutamate occurs through two pathways in most microorganisms. In the first pathway, glutamate is synthesized through the reductive amination of -ketoglutarate by glutamate dehydrogenase. Two NADPH-dependent glutamate dehydrogenases exist in S. cerevisiae: Gdh1p and Gdh3p. GDH1 is highly expressed when either ethanol or glucose is used as the carbon source, whereas GDH3 is glucose-repressed and induced only in ethanol. The second route of glutamate biosynthesis involves the combined action of glutamine synthetase (Gln1p) and glutamate synthase (Glt1p). In the first step, glutamate reacts with a molecule of ammonia in a reaction catalyzed by Gln1p to form glutamine. In the second, glutamine reacts with -ketoglutarate via Glt1p to form two molecules of glutamate, resulting in a net gain of one for each glutamate molecule that enters the pathway. Source: https://pathway.yeastgenome.org/

Comments

GenMAPP remarks 
Based on http://pathway.yeastgenome.org/biocyc/

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Quality Tags

Ontology Terms

 

Bibliography

  1. Zhao WN, McAlister-Henn L; ''Expression and gene disruption analysis of the isocitrate dehydrogenase family in yeast.''; Biochemistry, 1996 PubMed Europe PMC Scholia
  2. ''superpathway of glutamate biosynthesis''; YeastPathways,

History

View all...
CompareRevisionActionTimeUserComment
135618view20:54, 7 October 2024Khanspersremoved GenMAPP comments
135617view20:52, 7 October 2024KhanspersModified description
135616view20:50, 7 October 2024KhanspersOntology Term : 'classic metabolic pathway' added !
135615view20:50, 7 October 2024Khanspersupdated reference
135614view20:49, 7 October 2024Khanspersadded metabolites
135613view20:44, 7 October 2024Khanspersoverhaul plus reference
117344view11:53, 20 May 2021EweitzModified title
117343view11:52, 20 May 2021EweitzModified title
115237view07:27, 7 February 2021EgonwConverted more labels to datanodes.
89685view07:16, 25 September 2016EgonwReplace the CAS number of the salt with that of just the metabolite.
89519view11:01, 16 September 2016Mkutmonontology tag fix
89485view13:39, 15 September 2016Mkutmonremove space from ontology term id
69812view14:32, 11 July 2013EgonwMarked a few DataNodes with CAS registry numbers as metabolites.
69632view20:36, 8 July 2013MaintBotUpdated to 2013 gpml schema
67669view11:47, 26 June 2013DdiglesOntology Term : 'glutamic acid/glutamate biosynthetic pathway' added !
41868view04:52, 2 March 2011MaintBotRemoved redundant pathway information and comments
36632view22:35, 9 April 2010MaintBotDescription and bibliography added from SGD
21081view11:30, 14 November 2008MaintBot[[Pathway:Saccharomyces cerevisiae:Superpathway of Glutamate Biosynthesis]] moved to [[Pathway:WP191]]: Moved to stable identifier
12859view08:05, 17 May 2008MaintBotautomated metabolite conversion
8945view14:13, 7 January 2008MaintBotAdded to category $category
8943view14:12, 7 January 2008M.BraymerUploaded new pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
2 L-glutamateMetabolite56-86-0 (CAS)
2-oxoglutarateMetabolite16810 (ChEBI)
ADPMetabolite58-64-0 (CAS)
ATPMetabolite1927-31-7 (CAS)
CO2Metabolite16526 (ChEBI)
GDH1GeneProductS000005902 (SGD)
GDH3GeneProductS000000058 (SGD)
GLN1GeneProductS000006239 (SGD)
GLT1GeneProductS000002330 (SGD)
H+Metabolite15378 (ChEBI)
H2OMetabolite15377 (ChEBI)
IDP1GeneProductS000002224 (SGD)
IDP2GeneProductS000004164 (SGD)
IDP3GeneProductS000004954 (SGD)
L-glutamateMetabolite56-86-0 (CAS)
L-glutamineMetabolite56-85-9 (CAS)
NADMetabolite57540 (ChEBI)
NADHMetabolite53-84-9 (CAS)
NADPMetabolite58349 (ChEBI)
NADPHMetabolite53-57-6 (CAS)
NH3Metabolite28938 (ChEBI)
isocitrateMetabolite15562 (ChEBI)
phosphateMetabolite14265-44-2 (CAS)

Annotated Interactions

No annotated interactions
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