Phospholipid biosynthesis (Saccharomyces cerevisiae)

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Description

Phospholipids are amphipathic molecules that consist of a glycerol backbone esterified to a phosphate group and two fatty acids. As a primary structural element of biological membranes, phospholipids play important roles in cell morphology and organelle function. The major phospholipids found in total cell extracts from S. cerevisiae are phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylinositol (PI), and phosphatidylserine (PS); however, the phospholipid composition of yeast changes according to the carbon source used for growth.

All major phospholipid classes in S. cerevisiae may trace their synthesis to a common precursor: cytidine diphosphate diacylglycerol (CDP-DAG). CDP-DAG is synthesized in a reaction catalyzed by CDP-DAG synthase, which converts phosphatidic acid (PA) to CDP-DAG using cytidine triphosphate (CTP) as the CDP donor. There are two distinct CDP-DAG synthases in S. cerevisiae: Cds1p, localized in the endoplasmic reticulum (ER), and Tam41p, localized in the mitochondrial matrix. In the ER, CDP-DAG generated by Cds1p can be converted to phosphatidylinositol (PI) or phosphatidylserine (PS) via PI synthase (Pis1p) or PS synthase (Cho1p), respectively. In the mitochondrion, CDP-DAG generated by Tam41p can be sequentially converted to phosphatidylglycerol (PG), which can be further converted to cardiolipin. Synthesis of PI, PG, and cardiolipin occurs through similar mechanisms in mammalian cells; however, unlike yeast, mammals primarily synthesize PS from other phospholipids and not from CDP-DAG.

Description adapted from YeastPathways https://pathway.yeastgenome.org/.

Comments

GenMAPP remarks 
Based on http://pathway.yeastgenome.org/biocyc/

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Quality Tags

Ontology Terms

 

Bibliography

  1. Carman GM, Han GS; ''Regulation of phospholipid synthesis in Saccharomyces cerevisiae by zinc depletion.''; Biochim Biophys Acta, 2007 PubMed Europe PMC Scholia
  2. ''phospholipid biosynthesis''; YeastPathways,

History

View all...
CompareRevisionActionTimeUserComment
135923view20:03, 27 November 2024Khanspersremoved GenMAPP comments, updated reference
135922view20:02, 27 November 2024KhanspersOntology Term : 'classic metabolic pathway' added !
135921view20:02, 27 November 2024KhanspersModified description
135920view19:51, 27 November 2024Khanspersupdate
135642view17:13, 8 October 2024Khansperslayout
124935view08:07, 2 January 2023EgonwConverted to data nodes and connected lines
117325view11:47, 20 May 2021EweitzModified title
89492view13:41, 15 September 2016Mkutmonontology tag fix
89491view13:39, 15 September 2016Mkutmonremove space from ontology term id
69581view20:29, 8 July 2013MaintBotUpdated to 2013 gpml schema
67595view11:31, 26 June 2013DdiglesOntology Term : 'glycerophospholipid metabolic pathway' added !
53536view19:41, 8 November 2012EgonwMarked several DataNode's as Metabolite.
41806view04:48, 2 March 2011MaintBotRemoved redundant pathway information and comments
36631view22:34, 9 April 2010MaintBotDescription and bibliography added from SGD
20691view11:29, 14 November 2008MaintBot[[Pathway:Saccharomyces cerevisiae:Phospholipid Biosynthesis]] moved to [[Pathway:WP9]]: Moved to stable identifier
12818view08:04, 17 May 2008MaintBotautomated metabolite conversion
8885view14:11, 7 January 2008MaintBotAdded to category $category
8883view14:11, 7 January 2008M.BraymerUploaded new pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
1-(3-sn-phosphatidyl)-sn-glycerol 3-phosphateMetabolite
3.1.3.27GeneProduct3.1.3.27 (Enzyme Nomenclature)
CDP-diacylglycerolMetaboliteC00269 (KEGG Compound)
CDS1GeneProductS000000233 (SGD)
CHO1GeneProductS000000828 (SGD)
CHO2GeneProductS000003389 (SGD)
CMPMetabolite60377 (ChEBI)
CO2Metabolite16526 (ChEBI)
CRD1GeneProductS000002301 (SGD)
CTPMetabolite
H+Metabolite15378 (ChEBI)
H2OMetabolite15377 (ChEBI)
L-1-phosphatidyl-glycerolMetabolite
L-1-phosphatidylethanolamine Metabolite16038 (ChEBI)
L-serineMetabolite56-45-1 (CAS)
OPI3GeneProductS000003834 (SGD)
PGS1GeneProductS000000510 (SGD)
PSD1GeneProductS000005113 (SGD)
PSD2GeneProductS000003402 (SGD)
Phosphatidylcholine biosynthesisPathway
S-adenosyl-L-methionineMetabolite
S-adenosyl-L-methionineMetabolite59789 (ChEBI)
S-adenosyl-homocysteineMetabolite
S-adenosyl-homocysteineMetabolite57856 (ChEBI)
S-adenosyl-homocysteineMetabolite59789 (ChEBI)
a 3-O-sn-phosphatidyl-L-serineMetabolite11750 (ChEBI)
cardiolipinMetabolite
glycerol-3-phosphateMetabolite57597 (ChEBI)
glycerolMetabolite56-81-5 (CAS)
phosphateMetabolite14265-44-2 (CAS)
phosphatidic acidMetabolite
phosphatidyl-N-dimethylethanolamineMetaboliteC04308 (KEGG Compound)
phosphatidyl-N-methylethanolamineMetaboliteC01241 (KEGG Compound)
phosphatidylcholineMetabolite16110 (ChEBI)
pyrophosphateMetabolite2466-09-3 (CAS)

Annotated Interactions

No annotated interactions
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