22q11.2 distal CNV (Homo sapiens)

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Description

This is the molecular pathway around the 22q11.2 distal copy number variation (CNV). For the more common proximal CNV, please see WP4657.

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Ontology Terms

 

Bibliography

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  1. Tian B, Zhou J, Chen G, Jiang T, Li Q, Qin J; ''Downregulation of ZNF280A inhibits proliferation and tumorigenicity of colorectal cancer cells by promoting the ubiquitination and degradation of RPS14.''; Front Oncol, 2022 PubMed Europe PMC Scholia
  2. Eletr ZM, Huang DT, Duda DM, Schulman BA, Kuhlman B; ''E2 conjugating enzymes must disengage from their E1 enzymes before E3-dependent ubiquitin and ubiquitin-like transfer.''; Nat Struct Mol Biol, 2005 PubMed Europe PMC Scholia
  3. Koo N, Sharma AK, Narayan S; ''Therapeutics Targeting p53-MDM2 Interaction to Induce Cancer Cell Death.''; Int J Mol Sci, 2022 PubMed Europe PMC Scholia
  4. Takeuchi M, Ishida A, Kameshita I, Kitani T, Okuno S, Fujisawa H; ''Identification and characterization of CaMKP-N, nuclear calmodulin-dependent protein kinase phosphatase.''; J Biochem, 2001 PubMed Europe PMC Scholia
  5. Kim PR, Koon YL, Lee RTC, Azizan F, Koh DHZ, Chiam KH, Koh CG; ''Phosphatase POPX2 interferes with cell cycle by interacting with Chk1.''; Cell Cycle, 2020 PubMed Europe PMC Scholia
  6. Offermanns S; ''G-proteins as transducers in transmembrane signalling.''; Prog Biophys Mol Biol, 2003 PubMed Europe PMC Scholia
  7. Tull TJ, Pitcher MJ, Guesdon W, Siu JHY, Lebrero-Fernández C, Zhao Y, Petrov N, Heck S, Ellis R, Dhami P, Kadolsky UD, Kleeman M, Kamra Y, Fear DJ, John S, Jassem W, Groves RW, Sanderson JD, Robson MG, D'Cruz DP, Bemark M, Spencer J; ''Human marginal zone B cell development from early T2 progenitors.''; J Exp Med, 2021 PubMed Europe PMC Scholia
  8. Hu T, Tang X, Ruan T, Long S, Liu G, Ma J, Li X, Zhang R, Huang G, Shen Y, Lin T; ''IQUB mutation induces radial spoke 1 deficiency causing asthenozoospermia with normal sperm morphology in humans and mice.''; Cell Commun Signal, 2025 PubMed Europe PMC Scholia
  9. Guo Q, Lu J, Zhao H, Zhou D, Liu H; ''Effect of extracellular vesicle ZNF280B derived from lung cancer stem cells on lung cancer progression.''; Cancer Biol Ther, 2025 PubMed Europe PMC Scholia
  10. Sasako T, Ohsugi M, Kubota N, Itoh S, Okazaki Y, Terai A, Kubota T, Yamashita S, Nakatsukasa K, Kamura T, Iwayama K, Tokuyama K, Kiyonari H, Furuta Y, Shibahara J, Fukayama M, Enooku K, Okushin K, Tsutsumi T, Tateishi R, Tobe K, Asahara H, Koike K, Kadowaki T, Ueki K; ''Hepatic Sdf2l1 controls feeding-induced ER stress and regulates metabolism.''; Nat Commun, 2019 PubMed Europe PMC Scholia
  11. Harvey BP, Banga SS, Ozer HL; ''Regulation of the multifunctional Ca2+/calmodulin-dependent protein kinase II by the PP2C phosphatase PPM1F in fibroblasts.''; J Biol Chem, 2004 PubMed Europe PMC Scholia
  12. Susila A, Chan H, Loh AX, Phang HQ, Wong ET, Tergaonkar V, Koh CG; ''The POPX2 phosphatase regulates cancer cell motility and invasiveness.''; Cell Cycle, 2010 PubMed Europe PMC Scholia
  13. Haselbach D, Komarov I, Agafonov DE, Hartmuth K, Graf B, Dybkov O, Urlaub H, Kastner B, Lührmann R, Stark H; ''Structure and Conformational Dynamics of the Human Spliceosomal B(act) Complex.''; Cell, 2018 PubMed Europe PMC Scholia
  14. Farlie P, Reid C, Wilcox S, Peeters J, Reed G, Newgreen D; ''Ypel1: a novel nuclear protein that induces an epithelial-like morphology in fibroblasts.''; Genes Cells, 2001 PubMed Europe PMC Scholia
  15. Susila A, Chan H, Loh AX, Phang HQ, Wong ET, Tergaonkar V, Koh CG; ''The POPX2 phosphatase regulates cancer cell motility and invasiveness.''; Cell Cycle, 2010 PubMed Europe PMC Scholia
  16. Zhang W, Liu HT; ''MAPK signal pathways in the regulation of cell proliferation in mammalian cells.''; Cell Res, 2002 PubMed Europe PMC Scholia
  17. Gao S, Hsieh CL, Zhou J, Shemshedini L; ''Zinc Finger 280B regulates sGCα1 and p53 in prostate cancer cells.''; PLoS One, 2013 PubMed Europe PMC Scholia
  18. Zheng N, Wang P, Jeffrey PD, Pavletich NP; ''Structure of a c-Cbl-UbcH7 complex: RING domain function in ubiquitin-protein ligases.''; Cell, 2000 PubMed Europe PMC Scholia
  19. Lin HC, Ho SC, Chen YY, Khoo KH, Hsu PH, Yen HC; ''SELENOPROTEINS. CRL2 aids elimination of truncated selenoproteins produced by failed UGA/Sec decoding.''; Science, 2015 PubMed Europe PMC Scholia
  20. Wenzel DM, Lissounov A, Brzovic PS, Klevit RE; ''UBCH7 reactivity profile reveals parkin and HHARI to be RING/HECT hybrids.''; Nature, 2011 PubMed Europe PMC Scholia
  21. Abbas T, Dutta A; ''p21 in cancer: intricate networks and multiple activities.''; Nat Rev Cancer, 2009 PubMed Europe PMC Scholia
  22. Winkler TH, MÃ¥rtensson IL; ''The Role of the Pre-B Cell Receptor in B Cell Development, Repertoire Selection, and Tolerance.''; Front Immunol, 2018 PubMed Europe PMC Scholia
  23. Kim EJ, Park MK, Kang GJ, Byun HJ, Kim HJ, Yu L, Kim B, Chae HS, Chin YW, Shim JG, Lee H, Lee CH; ''YDJC Induces Epithelial-Mesenchymal Transition via Escaping from Interaction with CDC16 through Ubiquitination of PP2A.''; J Oncol, 2019 PubMed Europe PMC Scholia
  24. Meunier L, Usherwood YK, Chung KT, Hendershot LM; ''A subset of chaperones and folding enzymes form multiprotein complexes in endoplasmic reticulum to bind nascent proteins.''; Mol Biol Cell, 2002 PubMed Europe PMC Scholia
  25. Weng T, Koh CG; ''POPX2 phosphatase regulates apoptosis through the TAK1-IKK-NF-κB pathway.''; Cell Death Dis, 2017 PubMed Europe PMC Scholia
  26. Yam-Puc JC, Zhang L, Zhang Y, Toellner KM; ''Role of B-cell receptors for B-cell development and antigen-induced differentiation.''; F1000Res, 2018 PubMed Europe PMC Scholia
  27. Bui QT, Hong JH, Kwak M, Lee JY, Lee PC; ''Ubiquitin-Conjugating Enzymes in Cancer.''; Cells, 2021 PubMed Europe PMC Scholia
  28. Su S, Xue Y, Sharov A, Zhang Y, Lee SK, Martindale JL, Li W, Ku WL, Zhao K, De S, Shen W, Sen P, Gorospe M, Xu D, Wang W; ''A dual-activity topoisomerase complex regulates mRNA translation and turnover.''; Nucleic Acids Res, 2022 PubMed Europe PMC Scholia
  29. Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R; ''Structures of the human and Drosophila 80S ribosome.''; Nature, 2013 PubMed Europe PMC Scholia
  30. Nottingham RM, Pusapati GV, Ganley IG, Barr FA, Lambright DG, Pfeffer SR; ''RUTBC2 protein, a Rab9A effector and GTPase-activating protein for Rab36.''; J Biol Chem, 2012 PubMed Europe PMC Scholia
  31. Hoshi T, Tezuka T, Yokoyama K, Iemura S, Natsume T, Yamanashi Y; ''Mesdc2 plays a key role in cell-surface expression of Lrp4 and postsynaptic specialization in myotubes.''; FEBS Lett, 2013 PubMed Europe PMC Scholia
  32. Abbas T, Dutta A; ''p21 in cancer: intricate networks and multiple activities.''; Nat Rev Cancer, 2009 PubMed Europe PMC Scholia
  33. Damek-Poprawa M, Diemer T, Lopes VS, Lillo C, Harper DC, Marks MS, Wu Y, Sparrow JR, Rachel RA, Williams DS, Boesze-Battaglia K; ''Melanoregulin (MREG) modulates lysosome function in pigment epithelial cells.''; J Biol Chem, 2009 PubMed Europe PMC Scholia
  34. Su S, Xue Y, Sharov A, Zhang Y, Lee SK, Martindale JL, Li W, Ku WL, Zhao K, De S, Shen W, Sen P, Gorospe M, Xu D, Wang W; ''A dual-activity topoisomerase complex regulates mRNA translation and turnover.''; Nucleic Acids Res, 2022 PubMed Europe PMC Scholia
  35. Passeron T, Valencia JC, Namiki T, Vieira WD, Passeron H, Miyamura Y, Hearing VJ; ''Upregulation of SOX9 inhibits the growth of human and mouse melanomas and restores their sensitivity to retinoic acid.''; J Clin Invest, 2009 PubMed Europe PMC Scholia
  36. Fortier JM, Kornbluth J; ''NK lytic-associated molecule, involved in NK cytotoxic function, is an E3 ligase.''; J Immunol, 2006 PubMed Europe PMC Scholia
  37. Uchiki T, Kim HT, Zhai B, Gygi SP, Johnston JA, O'Bryan JP, Goldberg AL; ''The ubiquitin-interacting motif protein, S5a, is ubiquitinated by all types of ubiquitin ligases by a mechanism different from typical substrate recognition.''; J Biol Chem, 2009 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
140338view19:28, 11 August 2025EgonwModified description
140289view07:45, 11 August 2025FehrhartModified description
140288view07:43, 11 August 2025FehrhartSmall graphical changes to make it more compact
139472view03:46, 19 June 2025EgonwModified description
139447view14:52, 17 June 2025KhanspersOntology Term : 'genetic disease' added !
139446view14:51, 17 June 2025KhanspersOntology Term : 'chromosome 22q11.2 deletion syndrome, distal' added !
139402view09:49, 15 June 2025EgonwRemoved two stock comments
139401view09:47, 15 June 2025EgonwFixed a few datasources
139383view17:42, 11 June 2025Khansperschanged chromosome arrows to gaphical lines, fixed unconnected interaction
139377view12:27, 10 June 2025Chris1330testing update
139376view11:46, 10 June 2025Chris1330changed a few genes and also added the remaining genes
139354view10:17, 5 June 2025Chris1330added some genes and changed some old ones
139353view15:04, 4 June 2025Chris1330added some more genes
139348view15:30, 3 June 2025Chris1330few new genes and changed some old ones
139141view10:14, 23 May 2025Chris1330added several more genes
139054view07:44, 14 May 2025Chris1330New pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
40S cytosolic small ribosomal subunit
AK8GeneProductENSG00000165695 (Ensembl)
AQRGeneProductENSG00000021776 (Ensembl)
ARIH1GeneProductENSG00000166233 (Ensembl)
ATF6GeneProductENSG00000118217 (Ensembl)
ApoptosisPathwayWP5530 (WikiPathways)
BCRGeneProductENSG00000186716 (Ensembl)
BUD31GeneProductENSG00000106245 (Ensembl)
CABP1GeneProductENSG00000157782 (Ensembl)
CALRGeneProductENSG00000179218 (Ensembl)
CAMK1GeneProductENSG00000134072 (Ensembl)
CAMK2AGeneProductENSG00000070808 (Ensembl)
CAMK4GeneProductENSG00000152495 (Ensembl)
CANXGeneProductENSG00000127022 (Ensembl)
CBLGeneProductENSG00000110395 (Ensembl)
CCDC116GeneProductENSG00000161180 (Ensembl)
CD79AGeneProductENSG00000105369 (Ensembl)
CD79BGeneProductENSG00000007312 (Ensembl)
CDC16GeneProductENSG00000130177 (Ensembl)
CDC5LGeneProductENSG00000096401 (Ensembl)
CHEK1GeneProductENSG00000149554 (Ensembl)
CRNKL1GeneProductENSG00000101343 (Ensembl)
CUL2GeneProductENSG00000108094 (Ensembl)
CWC15GeneProductENSG00000150316 (Ensembl)
CWC22GeneProductENSG00000163510 (Ensembl)
Clustering of LAMP1-positive Lysosomes
DHX16GeneProductENSG00000204560 (Ensembl)
DNAJB11GeneProductENSG00000090520 (Ensembl)
DNAJB13GeneProductENSG00000187726 (Ensembl)
DYDC1GeneProductENSG00000170788 (Ensembl)
DYNLL1GeneProductENSG00000088986  (Ensembl)
E3 ubiquitin ligase complex
EFTUD2GeneProductENSG00000108883 (Ensembl)
ELOBGeneProductENSG00000103363 (Ensembl)
ELOCGeneProductENSG00000154582 (Ensembl)
ERP29GeneProductENSG00000089248 (Ensembl)
FAUGeneProductENSG00000149806 (Ensembl)
G Protein SignallingPathwayWP35 (WikiPathways)
GGTLC2GeneProductENSG00000100121 (Ensembl)
GNAZGeneProductENSG00000128266 (Ensembl)
GTPMetaboliteCHEBI:37565 (ChEBI)
HSP90B1GeneProductENSG00000166598 (Ensembl)
HSPA5GeneProductENSG00000044574 (Ensembl)
HYOU1GeneProductENSG00000149428 (Ensembl)
IGLL1GeneProductENSG00000128322 (Ensembl)
IGLL5GeneProductENSG00000254709 (Ensembl)
IQUBGeneProductENSG00000164675 (Ensembl)
LRP4GeneProductENSG00000134569 (Ensembl)
MAPK signaling pathwayPathwayWP769 (WikiPathways)
MAPK1GeneProductENSG00000100030 (Ensembl)
MDM2GeneProductENSG00000135679 (Ensembl)
Major Spliceosomal B-act-II complex
NEDD4GeneProductENSG00000069869 (Ensembl)
NME5GeneProductENSG00000112981 (Ensembl)
PAK1GeneProductENSG00000149269 (Ensembl)
PAK2GeneProductENSG00000180370 (Ensembl)
PDIA2GeneProductENSG00000185615 (Ensembl)
PDIA4GeneProductENSG00000155660 (Ensembl)
PHF5AGeneProductENSG00000100410 (Ensembl)
PLRG1GeneProductENSG00000171566 (Ensembl)
PPIBGeneProductENSG00000166794 (Ensembl)
PPIEGeneProductENSG00000084072 (Ensembl)
PPIL1GeneProductENSG00000137168 (Ensembl)
PPIL2GeneProductENSG00000100023 (Ensembl)
PPIL4GeneProductENSG00000131013 (Ensembl)
PPIL6GeneProductENSG00000185250 (Ensembl)
PPM1FGeneProductENSG00000100034 (Ensembl)
PRAMEGeneProductENSG00000185686 (Ensembl)
PRKNGeneProductENSG00000185345 (Ensembl)
PRPF8GeneProductENSG00000174231 (Ensembl)
PTPAGeneProductENSG00000119383 (Ensembl)
Pre-BCR Complex
RAB36GeneProductENSG00000100228 (Ensembl)
RACK1GeneProductENSG00000204628 (Ensembl)
RBM22GeneProductENSG00000086589 (Ensembl)
RBX1GeneProductENSG00000100387 (Ensembl)
RILPGeneProductENSG00000167705 (Ensembl)
RNF113AGeneProductENSG00000125352 (Ensembl)
RNF19BGeneProductENSG00000116514 (Ensembl)
ROPN1LGeneProductENSG00000145491 (Ensembl)
RPS10GeneProductENSG00000124614 (Ensembl)
RPS11GeneProductENSG00000142534 (Ensembl)
RPS12GeneProductENSG00000112306 (Ensembl)
RPS13GeneProductENSG00000110700 (Ensembl)
RPS14GeneProductENSG00000164587 (Ensembl)
RPS15AGeneProductENSG00000134419 (Ensembl)
RPS15GeneProductENSG00000115268 (Ensembl)
RPS16GeneProductENSG00000105193 (Ensembl)
RPS17GeneProductENSG00000182774 (Ensembl)
RPS18GeneProductENSG00000231500 (Ensembl)
RPS19GeneProductENSG00000105372 (Ensembl)
RPS20GeneProductENSG00000008988 (Ensembl)
RPS21GeneProductENSG00000171858 (Ensembl)
RPS23GeneProductENSG00000186468 (Ensembl)
RPS24GeneProductENSG00000138326 (Ensembl)
RPS25GeneProductENSG00000280831 (Ensembl)
RPS26GeneProductENSG00000197728 (Ensembl)
RPS27AGeneProductENSG00000143947 (Ensembl)
RPS28GeneProductENSG00000233927 (Ensembl)
RPS29GeneProductENSG00000213741 (Ensembl)
RPS2GeneProductENSG00000140988 (Ensembl)
RPS3AGeneProductENSG00000292158 (Ensembl)
RPS3GeneProductENSG00000149273 (Ensembl)
RPS5GeneProductENSG00000083845 (Ensembl)
RPS6GeneProductENSG00000137154 (Ensembl)
RPS7GeneProductENSG00000171863 (Ensembl)
RPS8GeneProductENSG00000142937 (Ensembl)
RPS9GeneProductENSG00000170889 (Ensembl)
RPSAGeneProductENSG00000168028 (Ensembl)
RSPH14GeneProductENSG00000100218 (Ensembl)
RSPH3GeneProductENSG00000130363 (Ensembl)
RSPH6AGeneProductENSG00000104941 (Ensembl)
RSPH9GeneProductENSG00000172426 (Ensembl)
Radial Spoke Complex
SDF2L1GeneProductENSG00000128228 (Ensembl)
SF3A1GeneProductENSG00000099995 (Ensembl)
SF3A2GeneProductENSG00000104897 (Ensembl)
SF3A3GeneProductENSG00000183431 (Ensembl)
SF3B1GeneProductENSG00000115524 (Ensembl)
SF3B2GeneProductENSG00000087365 (Ensembl)
SF3B3GeneProductENSG00000189091 (Ensembl)
SF3B4GeneProductENSG00000143368 (Ensembl)
SF3B5GeneProductENSG00000169976 (Ensembl)
SNRNP200GeneProductENSG00000144028 (Ensembl)
SNRNP40GeneProductENSG00000060688 (Ensembl)
SNRPA1GeneProductENSG00000131876 (Ensembl)
SNRPB2GeneProductENSG00000125870 (Ensembl)
SNRPBGeneProductENSG00000125835 (Ensembl)
SNRPD1GeneProductENSG00000167088 (Ensembl)
SNRPD2GeneProductENSG00000125743 (Ensembl)
SNRPD3GeneProductENSG00000100028 (Ensembl)
SNRPEGeneProductENSG00000182004 (Ensembl)
SNRPFGeneProductENSG00000139343 (Ensembl)
SNRPGGeneProductENSG00000143977 (Ensembl)
SNW1GeneProductENSG00000100603 (Ensembl)
SOX9GeneProductENSG00000125398 (Ensembl)
SRRM2GeneProductENSG00000167978 (Ensembl)
TDRD3-TOP3B type IA topoisomerase complex
TDRD3GeneProductENSG00000083544 (Ensembl)
TOP3BProteinC9JEI7 (Uniprot-TrEMBL)
TP53GeneProductENSG00000141510 (Ensembl)
Transcriptional regulation of memory B cell differentiationPathwayWP5491 (WikiPathways)
UBA1GeneProductENSG00000130985 (Ensembl)
UBA6GeneProductENSG00000033178 (Ensembl)
UBE2L3GeneProductENSG00000185651 (Ensembl)
UBE3AGeneProductENSG00000114062 (Ensembl)
UGGT1GeneProductENSG00000136731 (Ensembl)
VPREB1GeneProductENSG00000169575 (Ensembl)
XAB2GeneProductENSG00000076924 (Ensembl)
XBP1GeneProductENSG00000100219 (Ensembl)
YDJCGeneProductENSG00000161179 (Ensembl) degardation
YPEL1GeneProductENSG00000100027 (Ensembl)
ZNF280AGeneProductENSG00000169548 (Ensembl)
ZNF280BGeneProductENSG00000275004 (Ensembl)

Annotated Interactions

No annotated interactions