PI3K-AKT-NFkB pathway (Rattus norvegicus)

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CELL ADHESION MOLECULESANTI-APOPTOSISSTRESS RESPONSE GENESDirect activationGROWTH FACTORSANTIGEN PROCESSINGDNAIndirect inactivationTRANSCRIPTION FACTORSNUCLEAUSHeat shockCELL MEMBRANEDirect inhibitionCYTOKINESAPOPTOSISProteosomal digestionIndirect activationCYTOPLASMReactive oxygen speciesMycAkt1RelAEgfrCXCL11BimUbBaxPfkfb2Ppp2r3aBmp3VcamSod1CflipIgfbp2Tnfr1aTraf6TNFBmp2PdgfARelTraddFasAkt2Irf1Psmb9Fox01cxcl2UbPpp2caIkkbNfkb2Nfkb1Tap1Bcl2A1TirapIrs1mTorBcl2Ripk1c-FosCfbIcam-1Glut2IkkgBirc2Gsk-3Ccl17Fth1BadSod2HSPRantesErbb2IkkaTab1Tlr 4Nfkb2ELAM-1TapbpMyd88Glut4Birc3RelANfkbibIrs2Ppp2r5dInsrPik3caBcl2l1HMOX1Ins1RelAAbca1Ptk2BaxNfkb1EGFp53Tak1IL-1 RNfkbiaNfkbieRelAPdpk1Bcl2l10Pik3r1cJunGlut1Tpl-2Mdm2Traf2Bnip3Gab2Irak4Ras


Description

NFKB is an important transcription factor induced by multiple cellular mechanisms. This pathway diagram depicts the major activators of the pathway and the downsteam genes regulated by the pathway. Activation of growth factor receptors by growth factors or cellular stress leads to the activation of the Phosphatidyl Inositol-3 kinases (PI3Kinases). PI3 kinases phosphorylate the inositol ring of Phosphatidyl inositol to produce Phosphatidyl inositol (3,4,5)-trisphosphate (PIP3). PIP3 activates downstream serine-threonine protein kinases such as Protein kinase B (AKT/PKB) through the kinase PDK1. Activation of Akt is tightly regulated by the quantity of the second messenger phosphatidyl inositol triphosphate.(PIP3). AKT itself can be dephosphorylated by the action of protein phosphatases. AKT contributes to several cellular functions including inhibition of apoptosis and cell survival, nutrient metabolism, cell growth, transcriptional regulation. AKT inhibits apoptosis by the phosphorylated inhibition of BAD and caspase 9. AKT phosphorylates and inactivates the enzyme glycogen synthetase kinase 3 and activates the transcription of glucose transporter (GLUT 1) and the glycolytic enzyme Phospho-fructo-2-kinase. AKT activates the NFΚΒ pathway through direct activation of IΚK and through phosphorylation of the MAP3kinase Tpl2. Activation of the NFΚΒ pathway also occurs through trans-membrane receptor complexes (TNF receptor superfamily, IL-1 receptor and the Toll like receptor family). Hypoxia, reactive oxygen species and cytokines such as TNF alpha and IL-1 activate the NFΚΒ pathway through these receptors. NFΚΒ elements are usually present in the cytoplasm as homo or heterodimers. They are localised to the cytoplasm by being complexed to proteins called the Inhibitors of Kappa beta (IΚΒ). Activation of the NFΚΒ pathway involves the breakdown of these complexes by proteosomal degradation of the IΚΒ subunits and translocation of the NFΚΒ elements into the nucleus. This is catalyzed by the action of protein kinases called the inhibitors of kappa kinase (IΚK) complex. In the nucleus NFΚΒ elements induce the transcription of genes related to cytokines, cell surface receptors, pro-apoptotic and anti-apoptotic proteins, adhesion molecules and anti-oxidants. NFΚΒ pathway is regulated by several feedback loops including increased transcription of the Iκβε gene in response to NFΚΒ activation.

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History

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CompareRevisionActionTimeUserComment
126425view09:53, 28 April 2023EgonwLicense is CCZero
117958view10:52, 23 May 2021EweitzModified title
89860view12:28, 6 October 2016MkutmonModified description
87308view20:56, 20 July 2016EgonwAdded a bunch of Ensembl gene IDs.
87194view09:48, 19 July 2016EgonwAdded a bunch of Ensembl gene IDs.
87193view09:41, 19 July 2016EgonwModified title
83996view10:32, 9 January 2016EgonwAdded Ensembl identifiers (needs more)
83941view23:43, 4 January 2016MaintBotminor layout
71832view19:37, 18 October 2013MaintBotremoved data source from nodes without identifier
67596view11:31, 26 June 2013DdiglesOntology Term : 'phosphatidylinositol 3-kinase-Akt signaling pathway' added !
58950view18:19, 21 February 2013MaintBotUpdated Ensembl data source
41698view02:37, 2 March 2011MaintBotRemoved redundant pathway information and comments
36258view20:01, 14 March 2010AlexanderPicoModified categories
36254view19:52, 14 March 2010AlexanderPicoConnected lines and created groups
36253view21:25, 13 March 2010CoolseenuModified description
36252view21:19, 13 March 2010CoolseenuNew pathway

External references

DataNodes

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NameTypeDatabase referenceComment
Abca1GeneProductabca1 (Ensembl Rat)
Akt1GeneProduct24185 (Entrez Gene)
Akt2GeneProduct25233 (Entrez Gene)
BadGeneProduct64639 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/64639?ordinalpos=3&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
BaxGeneProductBax (Ensembl Rat)
BaxGeneProductbax (Ensembl Rat)
Bcl2A1GeneProductbcl2a1 (Ensembl Rat)
Bcl2GeneProductbcl2a1 (Ensembl Rat)
Bcl2l10GeneProduct114552 (Entrez Gene)
Bcl2l1GeneProduct24888 (Entrez Gene)
BimGeneProduct64547 (Entrez Gene)
Birc2GeneProductbirc2 (Ensembl Rat)
Birc3GeneProduct78971 (Entrez Gene)
Bmp2GeneProductbmp2 (Ensembl Rat)
Bmp3GeneProductbmp3 (Ensembl Rat)
Bnip3GeneProductbnip3 (Ensembl Rat)
CXCL11GeneProductcxcl11 (Ensembl Rat)
Ccl17GeneProductccl17 (Ensembl Rat)
CfbGeneProduct294257 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/294257?ordinalpos=6&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
CflipGeneProductcflar (Ensembl Rat)
EGFGeneProductEGF (Ensembl Rat)
ELAM-1GeneProduct25544 (Entrez Gene)
EgfrGeneProductegfr (Ensembl Rat)
Erbb2GeneProducterbb2 (Ensembl Rat)
FasGeneProduct246097 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/246097?ordinalpos=5&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
Fox01GeneProduct84482 (Entrez Gene)
Fth1GeneProduct25319 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/25319?ordinalpos=3&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVD
Gab2GeneProductgab2 (Ensembl Rat)
Glut1GeneProductSLC2A3 (Ensembl Rat)
Glut2GeneProductSLC2A2 (Ensembl Rat)
Glut4GeneProduct25139 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/25139?ordinalpos=3&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
Gsk-3GeneProduct50686 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/50686?ordinalpos=2&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
HMOX1GeneProductHMOX1 (Ensembl Rat)
HSPGeneProduct
IL-1 RGeneProduct25663 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/25663?ordinalpos=3&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
Icam-1GeneProducticam1 (Ensembl Rat)
Igfbp2GeneProductigfbp2 (Ensembl Rat)
IkkaGeneProduct309361 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/309361?ordinalpos=4&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
IkkbGeneProduct84351 (Entrez Gene)
IkkgGeneProduct309295 (Entrez Gene)
Ins1GeneProductins1 (Ensembl Rat)
InsrGeneProductinsr (Ensembl Rat)
Irak4GeneProduct300177 (Entrez Gene)
Irf1GeneProduct24508 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/24508?ordinalpos=4&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
Irs1GeneProduct25467 (Entrez Gene)
Irs2GeneProduct29376 (Entrez Gene)
Mdm2GeneProduct314856 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/314856?ordinalpos=5&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
MycGeneProductmyc (Ensembl Rat)
Myd88GeneProductmyd88 (Ensembl Rat) http://www.ncbi.nlm.nih.gov/gene/301059?ordinalpos=3&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
Nfkb1GeneProductNFKB1 (Ensembl Rat)
Nfkb1GeneProductnfkb1 (Ensembl Rat)
Nfkb2GeneProductNFKB2 (Ensembl Rat)
Nfkb2GeneProductnfkb2 (Ensembl Rat)
NfkbiaGeneProductnfkbia (Ensembl Rat)
NfkbibGeneProductnfkbib (Ensembl Rat)
NfkbieGeneProduct316241 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/316241?ordinalpos=2&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
PdgfAGeneProduct25266 (Entrez Gene)
Pdpk1GeneProduct81745 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/81745?ordinalpos=3&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
Pfkfb2GeneProductpfkfb2 (Ensembl Rat)
Pik3caGeneProduct170911 (Entrez Gene)
Pik3r1GeneProduct25513 (Entrez Gene)
Ppp2caGeneProductPPP2CA (Ensembl Rat)
Ppp2r3aGeneProductPPP2R3A (Ensembl Rat)
Ppp2r5dGeneProductPPP2R5D (Ensembl Rat)
Psmb9GeneProductpsmb9 (Ensembl Rat)
Ptk2GeneProductptk2 (Ensembl Rat) http://www.ncbi.nlm.nih.gov/gene/5747?ordinalpos=2&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
RantesGeneProduct81780 (Entrez Gene)
RasGeneProductKRAS (Ensembl Rat)
RelGeneProduct305584 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/305584?ordinalpos=10&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.G
RelAGeneProductRELA (Ensembl Rat)
RelAGeneProductrela (Ensembl Rat)
Ripk1GeneProduct306886 (Entrez Gene)
Sod1GeneProductSOD1 (Ensembl Rat)
Sod2GeneProductSOD2 (Ensembl Rat)
TNFGeneProducttnf (Ensembl Rat)
Tab1GeneProduct25663 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/315139?ordinalpos=5&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
Tak1GeneProduct313121 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/313121?ordinalpos=8&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
Tap1GeneProducttap1 (Ensembl Rat)
TapbpGeneProduct25217 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/25217?ordinalpos=3&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
TirapGeneProduct680127 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/680127?ordinalpos=3&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
Tlr 4GeneProduct29260 (Entrez Gene)
Tnfr1aGeneProduct25625 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/25625?ordinalpos=4&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
Tpl-2GeneProduct116596 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/116596?ordinalpos=2&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDo
TraddGeneProducttradd (Ensembl Rat)
Traf2GeneProduct311786 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/311786?ordinalpos=4&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
Traf6GeneProduct311245 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/311245?ordinalpos=4&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
UbGeneProductubc (Ensembl Rat)
UbGeneProductubd (Ensembl Rat)
VcamGeneProductvcam1 (Ensembl Rat)
c-FosGeneProductfos (Ensembl Rat)
cJunGeneProductjun (Ensembl Rat)
cxcl2GeneProduct114105 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/114105?ordinalpos=3&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum
mTorGeneProduct56718 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/56718?ordinalpos=2&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Ge
p53GeneProduct24842 (Entrez Gene) http://www.ncbi.nlm.nih.gov/gene/24842?ordinalpos=9&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gen

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