Flowering time pathway (Oryza sativa)

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FLOWERINGNF-YA6NF-YA5NF-YA10bNF-YA10aNF-YA1NF-YA3NF-YA2NF-YA8NF-YA4 103, 112NF-YA subunitSDLDFACPR COMPLEXSDNo orthologs in riceV53, 110Co-regulationExpression is alteredTranscript to ProteinBindVernalizationParalogsNo orthologs foundShort DayInhibition; Down-regulationTo be moved into PathwayComplexActivation; Up-regulationKEYOsMADS29SINAT5ESP4FRL2FLCELF8OsMADS5EFSOsMADS8PIE1FIECUL4BFRL1RFT1EMFJMJ706bhlh102Ghd7MAF3DCAF1OsMADS22OsMADS14bZIP72miRNACDF3VIL2?VEFOsMADS56CRY2OsMADS7DI19-2CDF5LUXHOS1ActinFTL1OsMADS31JMJ703CPS1OsMFT1ZOS1-20EDM2PIE1OsMADS3OsABF2HAP3IHd2AGL9SDG25LUXGAmiRNAFBX77NF-YB13ESD4aGF14eMAF1FVETICPHYAPHYCEZ3FUS9FYLEC1AZTLaSEF1LKP2PFT1OsPRP3ABH1COP1SRT2NF-YB4EZ1NF-YC11NF-YB3VIP4abhlh105LDL3NF-YC13NF-YB1VIL2bZIP23SPA1Hd1FBO10JMJ704OsHUA2ZOS9-19FLXGal1SDG26bhlh102OsbZIP10FIO1ATL6lOsLDJARID1CEZ3VIP2RAV1-like1NDPK2CDF2aOsMADS50SPYELF4PRMT5FRILHYHd1LHP1Dof12SRR1ATX-1HFR1PPR73ZnF36NF-YC2GIGID1FLKELF3bTOC1LFL1PRR59CSD2OsHB1aNF-YC1HAP3DFPF1ELF5RCN2OsCDF1PAF1CKB1HAP3FLHP1UV-DDBFLbhlh79SLR1OsAREB3TOE1PHYB/PHYDGF14bLEC1BSLR1LHP1TCPL1DET1OsCO3VRN5aGAMybPCFS4DPBF3PIN1OSOsMADS51ES43aELF3aFD1NF-YC10OSE2OsCam2OsMADS27AP2OsMADS6ROC5SPL13COL9aOsSPL14ELF9Ehd1RCN1CKB4FBO10VRN1REC14NF-YC8FCAOsPEPFYPP3LWDMSI1SPA2OsCRY1bGF14cNF-YC2aVRN2PHYBCKA1MADS18GIELF7WNK4ARP6FPACOL5RBX1ZTLaCOP1CDC73OsMADS1ID1MAF2NF-YB11COL51071574504215115782, 1644115715941157OsMADS15541211561572310, 6841, 93931993, 1571571249, 28, 5793, 15741, 15915741, 92118, 1404193, 15797, 13115741, 15915895, 15993, 1579593, 15727, 418515741, 68, 159724162, 159159112, 117, 127, 154Hd3aFD1GF14cLDSDHd3a72, 103, 113, 159ZTLaGI93, 15741, 159CIRCADIAN CLOCKNF-YB subunitNF-YB2NF-YC subunitMAF4157MAF5157PHYE118PIF7SMZ163SNZ157157U2AFLTPL112CRPBZR1POLE1POLA1DPNPaseMYB29 ZOS1-05FAS2SUS2SFR6PHDfLWNK8UV-DDB2WNK1DREB1GDREB1FGibberellic Acid SNF2LHd161OsMADS50Hd3aAutonomous PathwayTo be moved into pathwayDH1MADS47MADS72MADS61BrassinosteroidSNB26LRK1POLE1ES43bES43aES43bEZ1ZOS9-03EMFZOS9-03Sugar MetabolismMYBHd2Photoperiod CKA2HD6CK2alphaCpWNK8aWNK8b


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  1. Park S, Oh S, Ek-Ramos J, van Nocker S; ''PLANT HOMOLOGOUS TO PARAFIBROMIN is a component of the PAF1 complex and assists in regulating expression of genes within H3K27ME3-enriched chromatin.''; Plant Physiol, 2010 PubMed Europe PMC Scholia
  2. Kang X, Zhou Y, Sun X, Ni M; ''HYPERSENSITIVE TO RED AND BLUE 1 and its C-terminal regulatory function control FLOWERING LOCUS T expression.''; Plant J, 2007 PubMed Europe PMC Scholia
  3. Murakami M, Tago Y, Yamashino T, Mizuno T; ''Comparative overviews of clock-associated genes of Arabidopsis thaliana and Oryza sativa.''; Plant Cell Physiol, 2007 PubMed Europe PMC Scholia
  4. Iuchi S, Suzuki H, Kim YC, Iuchi A, Kuromori T, Ueguchi-Tanaka M, Asami T, Yamaguchi I, Matsuoka M, Kobayashi M, Nakajima M; ''Multiple loss-of-function of Arabidopsis gibberellin receptor AtGID1s completely shuts down a gibberellin signal.''; Plant J, 2007 PubMed Europe PMC Scholia
  5. Seo E, Yu J, Ryu KH, Lee MM, Lee I; ''WEREWOLF, a Regulator of Root Hair Pattern Formation, Controls Flowering Time through the Regulation of FT mRNA Stability.''; Plant Physiol, 2011 PubMed Europe PMC Scholia
  6. Fukamatsu Y, Mitsui S, Yasuhara M, Tokioka Y, Ihara N, Fujita S, Kiyosue T; ''Identification of LOV KELCH PROTEIN2 (LKP2)-interacting factors that can recruit LKP2 to nuclear bodies.''; Plant Cell Physiol, 2005 PubMed Europe PMC Scholia
  7. Kandasamy MK, Deal RB, McKinney EC, Meagher RB; ''''; , PubMed Europe PMC Scholia
  8. Ohmori S, Kimizu M, Sugita M, Miyao A, Hirochika H, Uchida E, Nagato Y, Yoshida H; ''MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice.''; Plant Cell, 2009 PubMed Europe PMC Scholia
  9. Ding Z, Millar AJ, Davis AM, Davis SJ; ''TIME FOR COFFEE encodes a nuclear regulator in the Arabidopsis thaliana circadian clock.''; Plant Cell, 2007 PubMed Europe PMC Scholia
  10. Purwestri YA, Ogaki Y, Tamaki S, Tsuji H, Shimamoto K; ''The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a.''; Plant Cell Physiol, 2009 PubMed Europe PMC Scholia
  11. Franklin KA, Whitelam GC; ''Light-quality regulation of freezing tolerance in Arabidopsis thaliana.''; Nat Genet, 2007 PubMed Europe PMC Scholia
  12. Jiang D, Wang Y, He Y; ''Repression of FLOWERING LOCUS C and FLOWERING LOCUS T by the Arabidopsis Polycomb repressive complex 2 components.''; PLoS One, 2008 PubMed Europe PMC Scholia
  13. Wang Y, Liu K, Liao H, Zhuang C, Ma H, Yan X; ''The plant WNK gene family and regulation of flowering time in Arabidopsis.''; Plant Biol (Stuttg), 2008 PubMed Europe PMC Scholia
  14. Yu X, Michaels SD; ''The Arabidopsis Paf1c complex component CDC73 participates in the modification of FLOWERING LOCUS C chromatin.''; Plant Physiol, 2010 PubMed Europe PMC Scholia
  15. Wang Y, Liu K, Liao H, Zhuang C, Ma H, Yan X; ''The plant WNK gene family and regulation of flowering time in Arabidopsis.''; Plant Biol (Stuttg), 2008 PubMed Europe PMC Scholia
  16. Schmitz RJ, Sung S, Amasino RM; ''Histone arginine methylation is required for vernalization-induced epigenetic silencing of FLC in winter-annual Arabidopsis thaliana.''; Proc Natl Acad Sci U S A, 2008 PubMed Europe PMC Scholia
  17. Chanvivattana Y, Bishopp A, Schubert D, Stock C, Moon YH, Sung ZR, Goodrich J; ''Interaction of Polycomb-group proteins controlling flowering in Arabidopsis.''; Development, 2004 PubMed Europe PMC Scholia
  18. Shi Y, Zhang X, Xu ZY, Li L, Zhang C, Schl��ppi M, Xu ZQ; ''Influence of EARLI1-like genes on flowering time and lignin synthesis of Arabidopsis thaliana.''; Plant Biol (Stuttg), 2011 PubMed Europe PMC Scholia
  19. Krichevsky A, Kozlovsky SV, Gutgarts H, Citovsky V; ''Arabidopsis co-repressor complexes containing polyamine oxidase-like proteins and plant-specific histone methyltransferases.''; Plant Signal Behav, 2007 PubMed Europe PMC Scholia
  20. Adamczyk BJ, Lehti-Shiu MD, Fernandez DE; ''The MADS domain factors AGL15 and AGL18 act redundantly as repressors of the floral transition in Arabidopsis.''; Plant J, 2007 PubMed Europe PMC Scholia
  21. Greenup AG, Sasani S, Oliver SN, Talbot MJ, Dennis ES, Hemming MN, Trevaskis B; ''ODDSOC2 is a MADS box floral repressor that is down-regulated by vernalization in temperate cereals.''; Plant Physiol, 2010 PubMed Europe PMC Scholia
  22. Gothandam KM, Nalini E, Karthikeyan S, Shin JS; ''OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance.''; Plant Mol Biol, 2010 PubMed Europe PMC Scholia
  23. Taoka K, Ohki I, Tsuji H, Furuita K, Hayashi K, Yanase T, Yamaguchi M, Nakashima C, Purwestri YA, Tamaki S, Ogaki Y, Shimada C, Nakagawa A, Kojima C, Shimamoto K; ''14-3-3 proteins act as intracellular receptors for rice Hd3a florigen.''; Nature, 2011 PubMed Europe PMC Scholia
  24. Yamashino T, Matsushika A, Fujimori T, Sato S, Kato T, Tabata S, Mizuno T; ''A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana.''; Plant Cell Physiol, 2003 PubMed Europe PMC Scholia
  25. Portol��s S, M��s P; ''Altered oscillator function affects clock resonance and is responsible for the reduced day-length sensitivity of CKB4 overexpressing plants.''; Plant J, 2007 PubMed Europe PMC Scholia
  26. Han P, Garc��a-Ponce B, Fonseca-Salazar G, Alvarez-Buylla ER, Yu H; ''AGAMOUS-LIKE 17, a novel flowering promoter, acts in a FT-independent photoperiod pathway.''; Plant J, 2008 PubMed Europe PMC Scholia
  27. Peng LT, Shi ZY, Li L, Shen GZ, Zhang JL; ''Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter.''; Biochem Biophys Res Commun, 2007 PubMed Europe PMC Scholia
  28. Kim BH, von Arnim AG; ''FIERY1 regulates light-mediated repression of cell elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity.''; Plant J, 2009 PubMed Europe PMC Scholia
  29. Barrero JM, Gonz��lez-Bay��n R, del Pozo JC, Ponce MR, Micol JL; ''INCURVATA2 encodes the catalytic subunit of DNA Polymerase alpha and interacts with genes involved in chromatin-mediated cellular memory in Arabidopsis thaliana.''; Plant Cell, 2007 PubMed Europe PMC Scholia
  30. Bond DM, Dennis ES, Pogson BJ, Finnegan EJ; ''Histone acetylation, VERNALIZATION INSENSITIVE 3, FLOWERING LOCUS C, and the vernalization response.''; Mol Plant, 2009 PubMed Europe PMC Scholia
  31. Kim DH, Kang JG, Yang SS, Chung KS, Song PS, Park CM; ''A phytochrome-associated protein phosphatase 2A modulates light signals in flowering time control in Arabidopsis.''; Plant Cell, 2002 PubMed Europe PMC Scholia
  32. Xu L, Zhao Z, Dong A, Soubigou-Taconnat L, Renou JP, Steinmetz A, Shen WH; ''Di- and tri- but not monomethylation on histone H3 lysine 36 marks active transcription of genes involved in flowering time regulation and other processes in Arabidopsis thaliana.''; Mol Cell Biol, 2008 PubMed Europe PMC Scholia
  33. Wang Y, Liu C, Yang D, Yu H, Liou YC; ''Pin1At encoding a peptidyl-prolyl cis/trans isomerase regulates flowering time in Arabidopsis.''; Mol Cell, 2010 PubMed Europe PMC Scholia
  34. Bond DM, Dennis ES, Pogson BJ, Finnegan EJ; ''Histone acetylation, VERNALIZATION INSENSITIVE 3, FLOWERING LOCUS C, and the vernalization response.''; Mol Plant, 2009 PubMed Europe PMC Scholia
  35. Koo SC, Bracko O, Park MS, Schwab R, Chun HJ, Park KM, Seo JS, Grbic V, Balasubramanian S, Schmid M, Godard F, Yun DJ, Lee SY, Cho MJ, Weigel D, Kim MC; ''Control of lateral organ development and flowering time by the Arabidopsis thaliana MADS-box Gene AGAMOUS-LIKE6.''; Plant J, 2010 PubMed Europe PMC Scholia
  36. Mizukami Y, Ma H; ''Determination of Arabidopsis floral meristem identity by AGAMOUS.''; Plant Cell, 1997 PubMed Europe PMC Scholia
  37. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC Scholia
  38. Peng M, Cui Y, Bi YM, Rothstein SJ; ''AtMBD9: a protein with a methyl-CpG-binding domain regulates flowering time and shoot branching in Arabidopsis.''; Plant J, 2006 PubMed Europe PMC Scholia
  39. Ma H, Yanofsky MF, Meyerowitz EM; ''AGL1-AGL6, an Arabidopsis gene family with similarity to floral homeotic and transcription factor genes.''; Genes Dev, 1991 PubMed Europe PMC Scholia
  40. Doi K, Izawa T, Fuse T, Yamanouchi U, Kubo T, Shimatani Z, Yano M, Yoshimura A; ''Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1.''; Genes Dev, 2004 PubMed Europe PMC Scholia
  41. Yang W, Jiang D, Jiang J, He Y; ''A plant-specific histone H3 lysine 4 demethylase represses the floral transition in Arabidopsis.''; Plant J, 2010 PubMed Europe PMC Scholia
  42. Pouteau S, Carr�� I, Gaudin V, Ferret V, Lefebvre D, Wilson M; ''Diversification of photoperiodic response patterns in a collection of early-flowering mutants of Arabidopsis.''; Plant Physiol, 2008 PubMed Europe PMC Scholia
  43. Benschop JJ, Mohammed S, O'Flaherty M, Heck AJ, Slijper M, Menke FL; ''Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.''; Mol Cell Proteomics, 2007 PubMed Europe PMC Scholia
  44. Farrona S, Hurtado L, March-D��az R, Schmitz RJ, Florencio FJ, Turck F, Amasino RM, Reyes JC; ''Brahma is required for proper expression of the floral repressor FLC in Arabidopsis.''; PLoS One, 2011 PubMed Europe PMC Scholia
  45. Yoshida N, Yanai Y, Chen L, Kato Y, Hiratsuka J, Miwa T, Sung ZR, Takahashi S; ''EMBRYONIC FLOWER2, a novel polycomb group protein homolog, mediates shoot development and flowering in Arabidopsis.''; Plant Cell, 2001 PubMed Europe PMC Scholia
  46. Jiang D, Wang Y, He Y; ''Repression of FLOWERING LOCUS C and FLOWERING LOCUS T by the Arabidopsis Polycomb repressive complex 2 components.''; PLoS One, 2008 PubMed Europe PMC Scholia
  47. Bezerra IC, Michaels SD, Schomburg FM, Amasino RM; ''Lesions in the mRNA cap-binding gene ABA HYPERSENSITIVE 1 suppress FRIGIDA-mediated delayed flowering in Arabidopsis.''; Plant J, 2004 PubMed Europe PMC Scholia
  48. Sun Q, Zhou DX; ''Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development.''; Proc Natl Acad Sci U S A, 2008 PubMed Europe PMC Scholia
  49. Pouteau S, Carr�� I, Gaudin V, Ferret V, Lefebvre D, Wilson M; ''Diversification of photoperiodic response patterns in a collection of early-flowering mutants of Arabidopsis.''; Plant Physiol, 2008 PubMed Europe PMC Scholia
  50. Noh B, Lee SH, Kim HJ, Yi G, Shin EA, Lee M, Jung KJ, Doyle MR, Amasino RM, Noh YS; ''Divergent roles of a pair of homologous jumonji/zinc-finger-class transcription factor proteins in the regulation of Arabidopsis flowering time.''; Plant Cell, 2004 PubMed Europe PMC Scholia
  51. de Folter S, Immink RG, Kieffer M, Parenicov�� L, Henz SR, Weigel D, Busscher M, Kooiker M, Colombo L, Kater MM, Davies B, Angenent GC; ''Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.''; Plant Cell, 2005 PubMed Europe PMC Scholia
  52. Bernhardt A, Lechner E, Hano P, Schade V, Dieterle M, Anders M, Dubin MJ, Benvenuto G, Bowler C, Genschik P, Hellmann H; ''CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana.''; Plant J, 2006 PubMed Europe PMC Scholia
  53. Staiger D, Allenbach L, Salathia N, Fiechter V, Davis SJ, Millar AJ, Chory J, Fankhauser C; ''The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function.''; Genes Dev, 2003 PubMed Europe PMC Scholia
  54. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC Scholia
  55. Rawat R, Takahashi N, Hsu PY, Jones MA, Schwartz J, Salemi MR, Phinney BS, Harmer SL; ''REVEILLE8 and PSEUDO-REPONSE REGULATOR5 form a negative feedback loop within the Arabidopsis circadian clock.''; PLoS Genet, 2011 PubMed Europe PMC Scholia
  56. Datta S, Hettiarachchi GH, Deng XW, Holm M; ''Arabidopsis CONSTANS-LIKE3 is a positive regulator of red light signaling and root growth.''; Plant Cell, 2006 PubMed Europe PMC Scholia
  57. Hong-Hermesdorf A, Br��x A, Gr��ber A, Gr��ber G, Schumacher K; ''A WNK kinase binds and phosphorylates V-ATPase subunit C.''; FEBS Lett, 2006 PubMed Europe PMC Scholia
  58. Taoka KI, Ohki I, Tsuji H, Furuita K, Hayashi K, Yanase T, Yamaguchi M, Nakashima C, Purwestri YA, Tamaki S, Ogaki Y, Shimada C, Nakagawa A, Kojima C, Shimamoto K; ''14-3-3 proteins act as intracellular receptors for rice Hd3a florigen.''; Nature, 2011 PubMed Europe PMC Scholia
  59. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC Scholia
  60. Brock MT, Maloof JN, Weinig C; ''Genes underlying quantitative variation in ecologically important traits: PIF4 (phytochrome interacting factor 4) is associated with variation in internode length, flowering time, and fruit set in Arabidopsis thaliana.''; Mol Ecol, 2010 PubMed Europe PMC Scholia
  61. Chanvivattana Y, Bishopp A, Schubert D, Stock C, Moon YH, Sung ZR, Goodrich J; ''Interaction of Polycomb-group proteins controlling flowering in Arabidopsis.''; Development, 2004 PubMed Europe PMC Scholia
  62. Andersson CR, Helliwell CA, Bagnall DJ, Hughes TP, Finnegan EJ, Peacock WJ, Dennis ES; ''The FLX gene of Arabidopsis is required for FRI-dependent activation of FLC expression.''; Plant Cell Physiol, 2008 PubMed Europe PMC Scholia
  63. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC Scholia
  64. Ito S, Nakamichi N, Nakamura Y, Niwa Y, Kato T, Murakami M, Kita M, Mizoguchi T, Niinuma K, Yamashino T, Mizuno T; ''Genetic linkages between circadian clock-associated components and phytochrome-dependent red light signal transduction in Arabidopsis thaliana.''; Plant Cell Physiol, 2007 PubMed Europe PMC Scholia
  65. Wang BB, Brendel V; ''Molecular characterization and phylogeny of U2AF35 homologs in plants.''; Plant Physiol, 2006 PubMed Europe PMC Scholia
  66. Colombo M, Brambilla V, Marcheselli R, Caporali E, Kater MM, Colombo L; ''A new role for the SHATTERPROOF genes during Arabidopsis gynoecium development.''; Dev Biol, 2010 PubMed Europe PMC Scholia
  67. Noble SM, French S, Kohn LA, Chen V, Johnson AD; ''Systematic screens of a Candida albicans homozygous deletion library decouple morphogenetic switching and pathogenicity.''; Nat Genet, 2010 PubMed Europe PMC Scholia
  68. ''''; , PubMed Europe PMC Scholia
  69. Sun Q, Zhou DX; ''Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development.''; Proc Natl Acad Sci U S A, 2008 PubMed Europe PMC Scholia
  70. Chen H, Huang X, Gusmaroli G, Terzaghi W, Lau OS, Yanagawa Y, Zhang Y, Li J, Lee JH, Zhu D, Deng XW; ''Arabidopsis CULLIN4-damaged DNA binding protein 1 interacts with CONSTITUTIVELY PHOTOMORPHOGENIC1-SUPPRESSOR OF PHYA complexes to regulate photomorphogenesis and flowering time.''; Plant Cell, 2010 PubMed Europe PMC Scholia
  71. Kojima S, Takahashi Y, Kobayashi Y, Monna L, Sasaki T, Araki T, Yano M; ''Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions.''; Plant Cell Physiol, 2002 PubMed Europe PMC Scholia
  72. Amasino R; ''Seasonal and developmental timing of flowering.''; Plant J, 2010 PubMed Europe PMC Scholia
  73. Morris K, Thornber S, Codrai L, Richardson C, Craig A, Sadanandom A, Thomas B, Jackson S; ''DAY NEUTRAL FLOWERING represses CONSTANS to prevent Arabidopsis flowering early in short days.''; Plant Cell, 2010 PubMed Europe PMC Scholia
  74. Zhang Y, Feng S, Chen F, Chen H, Wang J, McCall C, Xiong Y, Deng XW; ''Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes.''; Plant Cell, 2008 PubMed Europe PMC Scholia
  75. Kim SK, Yun CH, Lee JH, Jang YH, Park HY, Kim JK; ''OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice.''; Planta, 2008 PubMed Europe PMC Scholia
  76. Park BS, Eo HJ, Jang IC, Kang HG, Song JT, Seo HS; ''Ubiquitination of LHY by SINAT5 regulates flowering time and is inhibited by DET1.''; Biochem Biophys Res Commun, 2010 PubMed Europe PMC Scholia
  77. Higgins JA, Bailey PC, Laurie DA; ''''; , PubMed Europe PMC Scholia
  78. Kang HG, Jang S, Chung JE, Cho YG, An G; ''Characterization of two rice MADS box genes that control flowering time.''; Mol Cells, 1997 PubMed Europe PMC Scholia
  79. Pi��eiro M, G��mez-Mena C, Schaffer R, Mart��nez-Zapater JM, Coupland G; ''EARLY BOLTING IN SHORT DAYS is related to chromatin remodeling factors and regulates flowering in Arabidopsis by repressing FT.''; Plant Cell, 2003 PubMed Europe PMC Scholia
  80. Wang BB, Brendel V; ''Molecular characterization and phylogeny of U2AF35 homologs in plants.''; Plant Physiol, 2006 PubMed Europe PMC Scholia
  81. Kang HG, An G; ''Isolation and characterization of a rice MADS box gene belonging to the AGL2 gene family.''; Mol Cells, 1997 PubMed Europe PMC Scholia
  82. Griffiths J, Murase K, Rieu I, Zentella R, Zhang ZL, Powers SJ, Gong F, Phillips AL, Hedden P, Sun TP, Thomas SG; ''Genetic characterization and functional analysis of the GID1 gibberellin receptors in Arabidopsis.''; Plant Cell, 2006 PubMed Europe PMC Scholia
  83. Pien S, Fleury D, Mylne JS, Crevillen P, Inz�� D, Avramova Z, Dean C, Grossniklaus U; ''ARABIDOPSIS TRITHORAX1 dynamically regulates FLOWERING LOCUS C activation via histone 3 lysine 4 trimethylation.''; Plant Cell, 2008 PubMed Europe PMC Scholia
  84. Yaish MW, Peng M, Rothstein SJ; ''AtMBD9 modulates Arabidopsis development through the dual epigenetic pathways of DNA methylation and histone acetylation.''; Plant J, 2009 PubMed Europe PMC Scholia
  85. Farrona S, Hurtado L, March-D��az R, Schmitz RJ, Florencio FJ, Turck F, Amasino RM, Reyes JC; ''Brahma is required for proper expression of the floral repressor FLC in Arabidopsis.''; PLoS One, 2011 PubMed Europe PMC Scholia
  86. Cheng XF, Wang ZY; ''Overexpression of COL9, a CONSTANS-LIKE gene, delays flowering by reducing expression of CO and FT in Arabidopsis thaliana.''; Plant J, 2005 PubMed Europe PMC Scholia
  87. Gillmor CS, Park MY, Smith MR, Pepitone R, Kerstetter RA, Poethig RS; ''The MED12-MED13 module of Mediator regulates the timing of embryo patterning in Arabidopsis.''; Development, 2010 PubMed Europe PMC Scholia
  88. Mayfield JD, Folta KM, Paul AL, Ferl RJ; ''The 14-3-3 Proteins mu and upsilon influence transition to flowering and early phytochrome response.''; Plant Physiol, 2007 PubMed Europe PMC Scholia
  89. Farinas B, Mas P; ''Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation.''; Plant J, 2011 PubMed Europe PMC Scholia
  90. Ryu CH, Lee S, Cho LH, Kim SL, Lee YS, Choi SC, Jeong HJ, Yi J, Park SJ, Han CD, An G; ''OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice.''; Plant Cell Environ, 2009 PubMed Europe PMC Scholia
  91. Mouhu K, Hyt��nen T, Folta K, Rantanen M, Paulin L, Auvinen P, Elomaa P; ''Identification of flowering genes in strawberry, a perennial SD plant.''; BMC Plant Biol, 2009 PubMed Europe PMC Scholia
  92. Lim J, Moon YH, An G, Jang SK; ''Two rice MADS domain proteins interact with OsMADS1.''; Plant Mol Biol, 2000 PubMed Europe PMC Scholia
  93. Wang Y, Liu K, Liao H, Zhuang C, Ma H, Yan X; ''The plant WNK gene family and regulation of flowering time in Arabidopsis.''; Plant Biol (Stuttg), 2008 PubMed Europe PMC Scholia
  94. Berr A, Xu L, Gao J, Cognat V, Steinmetz A, Dong A, Shen WH; ''SET DOMAIN GROUP25 encodes a histone methyltransferase and is involved in FLOWERING LOCUS C activation and repression of flowering.''; Plant Physiol, 2009 PubMed Europe PMC Scholia
  95. Kang HG, Noh YS, Chung YY, Costa MA, An K, An G; ''Phenotypic alterations of petal and sepal by ectopic expression of a rice MADS box gene in tobacco.''; Plant Mol Biol, 1995 PubMed Europe PMC Scholia
  96. Balasubramanian S, Sureshkumar S, Agrawal M, Michael TP, Wessinger C, Maloof JN, Clark R, Warthmann N, Chory J, Weigel D; ''The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana.''; Nat Genet, 2006 PubMed Europe PMC Scholia
  97. Nakamichi N, Kita M, Niinuma K, Ito S, Yamashino T, Mizoguchi T, Mizuno T; ''Arabidopsis clock-associated pseudo-response regulators PRR9, PRR7 and PRR5 coordinately and positively regulate flowering time through the canonical CONSTANS-dependent photoperiodic pathway.''; Plant Cell Physiol, 2007 PubMed Europe PMC Scholia
  98. Murakami-Kojima M, Nakamichi N, Yamashino T, Mizuno T; ''The APRR3 component of the clock-associated APRR1/TOC1 quintet is phosphorylated by a novel protein kinase belonging to the WNK family, the gene for which is also transcribed rhythmically in Arabidopsis thaliana.''; Plant Cell Physiol, 2002 PubMed Europe PMC Scholia
  99. Jiang D, Wang Y, He Y; ''Repression of FLOWERING LOCUS C and FLOWERING LOCUS T by the Arabidopsis Polycomb repressive complex 2 components.''; PLoS One, 2008 PubMed Europe PMC Scholia
  100. Cui H, Benfey PN; ''Interplay between SCARECROW, GA and LIKE HETEROCHROMATIN PROTEIN 1 in ground tissue patterning in the Arabidopsis root.''; Plant J, 2009 PubMed Europe PMC Scholia
  101. Yu X, Li L, Guo M, Chory J, Yin Y; ''Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis.''; Proc Natl Acad Sci U S A, 2008 PubMed Europe PMC Scholia
  102. Jiang D, Yang W, He Y, Amasino RM; ''Arabidopsis relatives of the human lysine-specific Demethylase1 repress the expression of FWA and FLOWERING LOCUS C and thus promote the floral transition.''; Plant Cell, 2007 PubMed Europe PMC Scholia
  103. Seo PJ, Ryu J, Kang SK, Park CM; ''Modulation of sugar metabolism by an INDETERMINATE DOMAIN transcription factor contributes to photoperiodic flowering in Arabidopsis.''; Plant J, 2011 PubMed Europe PMC Scholia
  104. Peng M, Cui Y, Bi YM, Rothstein SJ; ''AtMBD9: a protein with a methyl-CpG-binding domain regulates flowering time and shoot branching in Arabidopsis.''; Plant J, 2006 PubMed Europe PMC Scholia
  105. del Olmo I, L��pez-Gonz��lez L, Mart��n-Trillo MM, Mart��nez-Zapater JM, Pi��eiro M, Jarillo JA; ''EARLY IN SHORT DAYS 7 (ESD7) encodes the catalytic subunit of DNA polymerase epsilon and is required for flowering repression through a mechanism involving epigenetic gene silencing.''; Plant J, 2010 PubMed Europe PMC Scholia
  106. Zhang H, van Nocker S; ''The VERNALIZATION INDEPENDENCE 4 gene encodes a novel regulator of FLOWERING LOCUS C.''; Plant J, 2002 PubMed Europe PMC Scholia
  107. Komiya R, Yokoi S, Shimamoto K; ''A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.''; Development, 2009 PubMed Europe PMC Scholia
  108. Wang X, Zhang Y, Ma Q, Zhang Z, Xue Y, Bao S, Chong K; ''SKB1-mediated symmetric dimethylation of histone H4R3 controls flowering time in Arabidopsis.''; EMBO J, 2007 PubMed Europe PMC Scholia
  109. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC Scholia
  110. Tamada Y, Yun JY, Woo SC, Amasino RM; ''ARABIDOPSIS TRITHORAX-RELATED7 is required for methylation of lysine 4 of histone H3 and for transcriptional activation of FLOWERING LOCUS C.''; Plant Cell, 2009 PubMed Europe PMC Scholia
  111. Mylne JS, Barrett L, Tessadori F, Mesnage S, Johnson L, Bernatavichute YV, Jacobsen SE, Fransz P, Dean C; ''LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC.''; Proc Natl Acad Sci U S A, 2006 PubMed Europe PMC Scholia
  112. Ikeda Y, Kobayashi Y, Yamaguchi A, Abe M, Araki T; ''Molecular basis of late-flowering phenotype caused by dominant epi-alleles of the FWA locus in Arabidopsis.''; Plant Cell Physiol, 2007 PubMed Europe PMC Scholia
  113. Knight H, Thomson AJ, McWatters HG; ''''; , PubMed Europe PMC Scholia
  114. Flowers JM, Hanzawa Y, Hall MC, Moore RC, Purugganan MD; ''Population genomics of the Arabidopsis thaliana flowering time gene network.''; Mol Biol Evol, 2009 PubMed Europe PMC Scholia
  115. Magome H, Yamaguchi S, Hanada A, Kamiya Y, Oda K; ''dwarf and delayed-flowering 1, a novel Arabidopsis mutant deficient in gibberellin biosynthesis because of overexpression of a putative AP2 transcription factor.''; Plant J, 2004 PubMed Europe PMC Scholia
  116. Komiya R, Yokoi S, Shimamoto K; ''A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.''; Development, 2009 PubMed Europe PMC Scholia
  117. Kumimoto RW, Zhang Y, Siefers N, Holt BF 3rd; ''NF-YC3, NF-YC4 and NF-YC9 are required for CONSTANS-mediated, photoperiod-dependent flowering in Arabidopsis thaliana.''; Plant J, 2010 PubMed Europe PMC Scholia
  118. He Y, Doyle MR, Amasino RM; ''PAF1-complex-mediated histone methylation of FLOWERING LOCUS C chromatin is required for the vernalization-responsive, winter-annual habit in Arabidopsis.''; Genes Dev, 2004 PubMed Europe PMC Scholia
  119. Yamashino T, Matsushika A, Fujimori T, Sato S, Kato T, Tabata S, Mizuno T; ''A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana.''; Plant Cell Physiol, 2003 PubMed Europe PMC Scholia
  120. Kim SL, Lee S, Kim HJ, Nam HG, An G; ''OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.''; Plant Physiol, 2007 PubMed Europe PMC Scholia
  121. Chrost B, Kolukisaoglu U, Schulz B, Krupinska K; ''''; , PubMed Europe PMC Scholia
  122. Kang X, Chong J, Ni M; ''HYPERSENSITIVE TO RED AND BLUE 1, a ZZ-type zinc finger protein, regulates phytochrome B-mediated red and cryptochrome-mediated blue light responses.''; Plant Cell, 2005 PubMed Europe PMC Scholia
  123. Farinas B, Mas P; ''Histone acetylation and the circadian clock: a role for the MYB transcription factor RVE8/LCL5.''; Plant Signal Behav, 2011 PubMed Europe PMC Scholia
  124. Lu SX, Knowles SM, Andronis C, Ong MS, Tobin EM; ''CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis.''; Plant Physiol, 2009 PubMed Europe PMC Scholia
  125. Mathieu J, Yant LJ, M��rdter F, K��ttner F, Schmid M; ''Repression of flowering by the miR172 target SMZ.''; PLoS Biol, 2009 PubMed Europe PMC Scholia
  126. Proveniers M, Rutjens B, Brand M, Smeekens S; ''The Arabidopsis TALE homeobox gene ATH1 controls floral competency through positive regulation of FLC.''; Plant J, 2007 PubMed Europe PMC Scholia
  127. Gawienowski MC, Szymanski D, Perera IY, Zielinski RE; ''Calmodulin isoforms in Arabidopsis encoded by multiple divergent mRNAs.''; Plant Mol Biol, 1993 PubMed Europe PMC Scholia
  128. Kandasamy MK, Deal RB, McKinney EC, Meagher RB; ''Silencing the nuclear actin-related protein AtARP4 in Arabidopsis has multiple effects on plant development, including early flowering and delayed floral senescence.''; Plant J, 2005 PubMed Europe PMC Scholia
  129. Choi K, Park C, Lee J, Oh M, Noh B, Lee I; ''Arabidopsis homologs of components of the SWR1 complex regulate flowering and plant development.''; Development, 2007 PubMed Europe PMC Scholia
  130. Itoh H, Nonoue Y, Yano M, Izawa T; ''A pair of floral regulators sets critical day length for Hd3a florigen expression in rice.''; Nat Genet, 2010 PubMed Europe PMC Scholia
  131. Chen H, Shen Y, Tang X, Yu L, Wang J, Guo L, Zhang Y, Zhang H, Feng S, Strickland E, Zheng N, Deng XW; ''Arabidopsis CULLIN4 Forms an E3 Ubiquitin Ligase with RBX1 and the CDD Complex in Mediating Light Control of Development.''; Plant Cell, 2006 PubMed Europe PMC Scholia
  132. Chanvivattana Y, Bishopp A, Schubert D, Stock C, Moon YH, Sung ZR, Goodrich J; ''Interaction of Polycomb-group proteins controlling flowering in Arabidopsis.''; Development, 2004 PubMed Europe PMC Scholia
  133. Nakamichi N, Murakami-Kojima M, Sato E, Kishi Y, Yamashino T, Mizuno T; ''Compilation and characterization of a novel WNK family of protein kinases in Arabiodpsis thaliana with reference to circadian rhythms.''; Biosci Biotechnol Biochem, 2002 PubMed Europe PMC Scholia
  134. Agarwal, P., Jha, B.; ''Transcription factors in plants and ABA dependent and independent abiotic stress signalling''; Biologia Plantarum, 2010
  135. Zhang H, Ransom C, Ludwig P, van Nocker S; ''Genetic analysis of early flowering mutants in Arabidopsis defines a class of pleiotropic developmental regulator required for expression of the flowering-time switch flowering locus C.''; Genetics, 2003 PubMed Europe PMC Scholia
  136. Sugano S, Andronis C, Green RM, Wang ZY, Tobin EM; ''Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated 1 protein.''; Proc Natl Acad Sci U S A, 1998 PubMed Europe PMC Scholia
  137. Fornara F, Panigrahi KC, Gissot L, Sauerbrunn N, R��hl M, Jarillo JA, Coupland G; ''Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response.''; Dev Cell, 2009 PubMed Europe PMC Scholia
  138. Fornara F, Coupland G; ''Plant phase transitions make a SPLash.''; Cell, 2009 PubMed Europe PMC Scholia
  139. Wu JF, Wang Y, Wu SH; ''Two new clock proteins, LWD1 and LWD2, regulate Arabidopsis photoperiodic flowering.''; Plant Physiol, 2008 PubMed Europe PMC Scholia
  140. Wang K, Tang D, Hong L, Xu W, Huang J, Li M, Gu M, Xue Y, Cheng Z; ''DEP and AFO regulate reproductive habit in rice.''; PLoS Genet, 2010 PubMed Europe PMC Scholia
  141. Bommert P, Satoh-Nagasawa N, Jackson D, Hirano HY; ''Genetics and evolution of inflorescence and flower development in grasses.''; Plant Cell Physiol, 2005 PubMed Europe PMC Scholia
  142. Eulgem T, Tsuchiya T, Wang XJ, Beasley B, Cuzick A, T��r M, Zhu T, McDowell JM, Holub E, Dangl JL; ''EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels.''; Plant J, 2007 PubMed Europe PMC Scholia
  143. Li H, Liang W, Jia R, Yin C, Zong J, Kong H, Zhang D; ''The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice.''; Cell Res, 2010 PubMed Europe PMC Scholia
  144. Herr AJ, Moln��r A, Jones A, Baulcombe DC; ''Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis.''; Proc Natl Acad Sci U S A, 2006 PubMed Europe PMC Scholia
  145. Yamaguchi A, Wu MF, Yang L, Wu G, Poethig RS, Wagner D; ''The microRNA-regulated SBP-Box transcription factor SPL3 is a direct upstream activator of LEAFY, FRUITFULL, and APETALA1.''; Dev Cell, 2009 PubMed Europe PMC Scholia
  146. Bernhardt A, Lechner E, Hano P, Schade V, Dieterle M, Anders M, Dubin MJ, Benvenuto G, Bowler C, Genschik P, Hellmann H; ''CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana.''; Plant J, 2006 PubMed Europe PMC Scholia
  147. Scortecci KC, Michaels SD, Amasino RM; ''Identification of a MADS-box gene, FLOWERING LOCUS M, that represses flowering.''; Plant J, 2001 PubMed Europe PMC Scholia
  148. Ratcliffe OJ, Kumimoto RW, Wong BJ, Riechmann JL; ''Analysis of the Arabidopsis MADS AFFECTING FLOWERING gene family: MAF2 prevents vernalization by short periods of cold.''; Plant Cell, 2003 PubMed Europe PMC Scholia
  149. Ishikawa R, Aoki M, Kurotani K, Yokoi S, Shinomura T, Takano M, Shimamoto K; ''Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice.''; Mol Genet Genomics, 2011 PubMed Europe PMC Scholia
  150. Jeon JS, Jang S, Lee S, Nam J, Kim C, Lee SH, Chung YY, Kim SR, Lee YH, Cho YG, An G; ''leafy hull sterile1 is a homeotic mutation in a rice MADS box gene affecting rice flower development.''; Plant Cell, 2000 PubMed Europe PMC Scholia
  151. Kim J, Kim Y, Yeom M, Kim JH, Nam HG; ''FIONA1 is essential for regulating period length in the Arabidopsis circadian clock.''; Plant Cell, 2008 PubMed Europe PMC Scholia
  152. Tamaki S, Matsuo S, Wong HL, Yokoi S, Shimamoto K; ''Hd3a protein is a mobile flowering signal in rice.''; Science, 2007 PubMed Europe PMC Scholia
  153. Salinas P, Fuentes D, Vidal E, Jordana X, Echeverria M, Holuigue L; ''An extensive survey of CK2 alpha and beta subunits in Arabidopsis: multiple isoforms exhibit differential subcellular localization.''; Plant Cell Physiol, 2006 PubMed Europe PMC Scholia
  154. Yu X, Li L, Guo M, Chory J, Yin Y; ''Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis.''; Proc Natl Acad Sci U S A, 2008 PubMed Europe PMC Scholia
  155. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC Scholia
  156. Wang K, Tang D, Hong L, Xu W, Huang J, Li M, Gu M, Xue Y, Cheng Z; ''DEP and AFO regulate reproductive habit in rice.''; PLoS Genet, 2010 PubMed Europe PMC Scholia
  157. Knight H, Thomson AJ, McWatters HG; ''Sensitive to freezing6 integrates cellular and environmental inputs to the plant circadian clock.''; Plant Physiol, 2008 PubMed Europe PMC Scholia
  158. Higgins JA, Bailey PC, Laurie DA; ''Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.''; PLoS One, 2010 PubMed Europe PMC Scholia
  159. Xing D, Zhao H, Xu R, Li QQ; ''Arabidopsis PCFS4, a homologue of yeast polyadenylation factor Pcf11p, regulates FCA alternative processing and promotes flowering time.''; Plant J, 2008 PubMed Europe PMC Scholia
  160. Lee DY, Lee J, Moon S, Park SY, An G; ''The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem.''; Plant J, 2007 PubMed Europe PMC Scholia
  161. Chen M, Ni M; ''RFI2, a RING-domain zinc finger protein, negatively regulates CONSTANS expression and photoperiodic flowering.''; Plant J, 2006 PubMed Europe PMC Scholia
  162. Teper-Bamnolker P, Samach A; ''The flowering integrator FT regulates SEPALLATA3 and FRUITFULL accumulation in Arabidopsis leaves.''; Plant Cell, 2005 PubMed Europe PMC Scholia
  163. Scortecci KC, Michaels SD, Amasino RM; ''Identification of a MADS-box gene, FLOWERING LOCUS M, that represses flowering.''; Plant J, 2001 PubMed Europe PMC Scholia
  164. Ni M, Tepperman JM, Quail PH; ''PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein.''; Cell, 1998 PubMed Europe PMC Scholia

History

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120355view22:08, 27 November 2021EgonwReverted to version '19:41, 27 November 2021' by Egonw
120354view21:42, 27 November 2021EgonwReplaced "a bridge" with "a link"
120353view21:07, 27 November 2021EgonwRetyped the problematic line
120352view21:03, 27 November 2021EgonwStill debugging
120351view20:56, 27 November 2021EgonwTrying to find the problematic character
120350view20:38, 27 November 2021EgonwRemove newlines
120349view19:41, 27 November 2021EgonwTypo fix
117417view10:43, 21 May 2021EweitzModified title
110980view14:38, 25 June 2020L DupuisConnected lines
87501view01:46, 25 July 2016AlexanderPicoOntology Term : 'signaling pathway' added !
85054view10:44, 10 April 2016EgonwReplaced a Wikipedia ID with a ChEBI ID.
78366view10:07, 7 January 2015MaintBotadded missing graphIds
74454view17:58, 21 April 2014MaintBotfixed width and height on unrotated shapes
74453view17:55, 21 April 2014MaintBotremoved inconsistent rotation of labeled shapes
74452view17:50, 21 April 2014MaintBotremoved extra line feed characters from label and ID fields
74436view06:34, 20 April 2014EgonwUniform PubMed IDs: only numbers.
72182view23:15, 25 October 2013AlexanderPicoAdded missing xrefs and a lit ref
72074view18:40, 24 October 2013KhanspersUpdated data sources
72073view18:32, 24 October 2013Khanspersfixed empty data sources
72072view18:25, 24 October 2013KhanspersPeriodical save, work in progress
71967view00:08, 24 October 2013MaintBotremoved data source from nodes without identifier
70136view20:53, 12 July 2013MaintBotupdated to 2013 schema
68780view21:51, 7 July 2013EgonwFixed a data source.
58407view22:14, 12 February 2013MaintBotModified categories
47686view23:55, 2 April 2012MamathaNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
?GeneProductNo FLC ortholog. FLC/MAF group of MADS box genes likely evolved after dicot/monocot divergence.
ABH1GeneProductLOC_Os03g22570Retrieved through Gramene (August 25, 2010)
AGL9GeneProduct
AP2GeneProductLOC_Os04g55560
ARP6GeneProductLOC_Os01g16414Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
ATL6lGeneProductLOC_Os09g29310Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
ATX-1GeneProductLOC_Os09g04890Retrieved through Gramene (August 25, 2010)
Actin GeneProductLOC_Os08g04280 (Rice Ensembl Gene)
BZR1 GeneProductLOC_Os07g39220 (Rice Ensembl Gene)
CDC73GeneProductLOC_Os03g46190Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
CDF2aGeneProductLOC_Os01g15900Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
CDF3GeneProductLOC_Os07g48570Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
CDF5GeneProductLOC_Os01g15900Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
CK2alphaCpGeneProductLOC_Os03g55490 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab
CKA1GeneProductLOC_Os03g55389
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab
CKA2GeneProductLOC_Os03g10940 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab
CKB1GeneProductLOC_Os10g41520 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • See Flowering Time Orthos Clean-25mar10 (Sheet4)
CKB4GeneProductLOC_Os07g31280 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
COL5GeneProductLOC_Os04g42020Retrieved through Gramene (August 25, 2010)
COL5GeneProductLOC_Os04g42020 (Rice Ensembl Gene)
COL9aGeneProductLOC_Os06g19444Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/RAPDB (August 25, 2010)
COP1GeneProductLOC_Os02g53140Retrieved through Gramene (August 25, 2010)
CPS1GeneProductLOC_Os02g17780
CRP GeneProductLOC_Os07g45400 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, 16-Nov-2011
CRY2GeneProductLOC_Os02g41550Retrieved through Gramene (August 25, 2010)
CSD2GeneProductLOC_Os08g44770Retrieved through Gramene (August 25, 2010)
CUL4BGeneProductLOC_Os03g57290Retrieved with Gramene (August 25, 2010)
DCAF1GeneProductLOC_Os04g59460Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
DET1GeneProductLOC_Os01g01484
DH1GeneProductRetrieved through NCBI (August 25, 2010)
DI19-2GeneProductLOC_Os05g28980
  • Retrieved through Gramene/NCBI
  • HRB1 represents a signaling step that regulates FLOWERING LOCUS T (FT) expression downstream of red and blue light perception.
DPBF3GeneProductLOC_Os01g59760Retrieved through Gramene/NCBI
DPNPase GeneProductLOC_Os12g08280 (Rice Ensembl Gene)
DREB1F


GeneProductLOC_Os01g73770 (Rice Ensembl Gene)
DREB1G


GeneProductLOC_Os02g45450 (Rice Ensembl Gene)
Dof12GeneProduct
EDM2GeneProductLOC_Os08g24946Retrieved with Gramene (August 25, 2010)
EFSGeneProductLOC_Os02g34850Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
ELF3aGeneProductLOC_Os06g05060Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
ELF3bGeneProductLOC_Os01g38530Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
ELF4GeneProductLOC_Os11g40610BLAST AtELF4 (AT2G40080) confirm on Gramene, assigned by Mamatha Hanumappa
ELF5GeneProductLOC_Os07g09510Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
ELF7GeneProductLOC_Os08g06070Retrieved through Gramene (August 25, 2010)
ELF8GeneProductLOC_Os07g29360Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
ELF9GeneProductLOC_Os04g41910Gene ID assigned by Mamatha Hanumappan (August 25, 2010)
EMFGeneProductLOC_Os04g08034Retrieved through Gramene (August 25, 2010)
ES43aGeneProductLOC_Os09g21770 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
ES43bGeneProductLOC_Os08g32620 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010). Paralog of JMJ704.
  • Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF
ESD4aGeneProductLOC_Os01g25370Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
ESP4GeneProductLOC_Os07g49320Retrieved through Gramene (August 25, 2010)
EZ1GeneProductLOC_Os06g16390 (Rice Ensembl Gene) Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
EZ3GeneProductLOC_Os03g19480Gene ID assigned by NCBI, cross-checked with Gramene (August 25, 2010)
Ehd1GeneProductLOC_Os10g32600
  • Retrieved through NCBI (August 25, 2010)
  • Induces Hd3a under SD
FAS2 GeneProductLOC_Os08g01680 (Rice Ensembl Gene)
FBO10GeneProductLOC_Os11g34460Retrieved through Gramene (August 25, 2010)
FBO10GeneProductLOC_Os11g34460 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
FBX77GeneProductLOC_Os03g10040 (Rice Ensembl Gene) Retrieved with Gramene (August 25, 2010)
FCAGeneProductLOC_Os09g03610Retrieved with Gramene (August 25, 2010)
FD1GeneProductLOC_Os09g36910Retrieved through Gramene/NCBI (August 25, 2010)
FD1GeneProductLOC_Os09g36910 (Rice Ensembl Gene)
  • Binds to promoter of MADS15 to activate transcription.
FIEGeneProductLOC_Os08g04270Retrieved with Gramene (August 25, 2010)
FIO1GeneProductLOC_Os02g02880Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
FLCGeneProductAT5G10140Retrieved through NCBI/Gramene (August 25, 2010)
FLKGeneProductLOC_Os12g40560Retrieved through Gramene (August 25, 2010)
FLGeneProductLOC_Os04g51000Retrieved with Gramene (August 25, 2010)
FLOWERINGPathway
FLXGeneProductLOC_Os07g32450
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • hits SIP30 in indica
FPAGeneProductLOC_Os09g34070Gene ID assigned by Mamatha Hanumappa (August 25, 2010)
FPF1GeneProductLOC_Os01g70730Retrieved with Gramene (August 25, 2010)
FRIGeneProductRetrieved with Gramene (August 25, 2010)
FRL1GeneProductLOC_Os03g09310
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
  • LOC_Os09g07380 Frigida (closest ortholog)
FRL2GeneProductLOC_Os03g09310Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
FTL1GeneProductLOC_Os01g11940 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010). Paralog of Hd3a. InParanoid retrieves Hd3a, RFT1 and FTL1 as orthologs of Arabidopsis FT (At1G65480) and TSF (AT4G20370). Hd3a is the ortholog of FT.
FUS9GeneProduct
FVEGeneProductLOC_Os01g51300Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
FYGeneProductLOC_Os01g72220Retrieved with Gramene (August 25, 2010)
FYPP3GeneProductLOC_Os01g49690Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
GAMetaboliteGibberellic Acid (Wikipedia) GA1 catalyzes conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) in gibberellin biosynthesis.
GAMybGeneProductLOC_Os01g59660Retrieved with Gramene (August 25, 2010)
GF14bGeneProductLOC_Os04g38870Retrieved through Gramene/NCBI/Phytozome (August 25, 2010)
GF14cGeneProductLOC_Os08g33370 (Rice Ensembl Gene)
  • Bridges Hd3a and FD1.
GF14cGeneProductLOC_Os08g33370 (Rice Ensembl Gene) Retrieved through Gramene/NCBI/Phytozome (August 25, 2010)
GF14eGeneProductLOC_Os02g36974Retrieved through Gramene/NCBI/Phytozome (August 25, 2010)
GID1GeneProductLOC_Os05g33730
  • AFFINITY TO GA4; ASSOCIATED WITH GID1B AND C WHICH ARE FUNCTIONALLY REDUNDANT
  • Retrieved through Gramene (August 25, 2010)
GIGeneProductLOC_Os01g08700
  • Required for induction of Ehd1 and Hd3a, but not thru Se5 and Ghd7 repression
  • Retrieved through NCBI (August 25, 2010)
Gal1GeneProductLOC_Os10g35110 (Rice Ensembl Gene)
Ghd7GeneProductLOC_Os06g06750
HAP3DGeneProductLOC_Os01g70890 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
HAP3FGeneProductLOC_Os07g41580 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
HAP3IGeneProductLOC_Os03g29970 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
HD6GeneProductLOC_Os07g02350 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • LOC_Os07g02350 is the ID that InParanoid retrieved, but homology was already done in the lab
HFR1GeneProductLOC_Os05g04740Retrieved through Gramene (August 25, 2010)
HOS1GeneProductLOC_Os03g52700Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
Hd1GeneProductLOC_Os06g16370 (Rice Ensembl Gene)
Hd1GeneProductLOC_Os06g16370 (Rice Ensembl Gene) Ortholog of Arabidopsis thaliana CO.
Hd2GeneProductLOC_Os07g49460 (Rice Ensembl Gene)
  • Alternate Gene_ID: Hd2
  • Retrieved through NCBI
Hd3aGeneProductLOC_Os06g06320 (Rice Ensembl Gene)
Hd3aGeneProductLOC_Os06g06320 (Rice Ensembl Gene) Ortholog of Arabidopsis thaliana FT. Paralogs FTL1 and RFT1 orthologs of AtTSF.
ID1GeneProductLOC_Os10g28330 (Gramene Rice)
JARID1CGeneProductLOC_Os03g05680 (Rice Ensembl Gene) Retrieved through Gramene/NCBI (August 25, 2010)
JMJ703GeneProductLOC_Os05g10770
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010). Paralog of JMJ704.
  • Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF
JMJ704GeneProductLOC_Os05g23670Retrieved with Gramene (August 25, 2010)
JMJ706GeneProductLOC_Os10g42690 (Rice Ensembl Gene) Retrieved through NCBI (August 25, 2010)
LDL3GeneProductLOC_Os04g47270Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
LEC1AGeneProductLOC_Os06g17480 (Rice Ensembl Gene) Retrieved through Gramene/NCBI (August 25, 2010)
LEC1BGeneProductLOC_Os02g49370 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
LFL1GeneProductLOC_Os01g56610Represses Ehd1 in LD
LHP1GeneProductLOC_Os10g17770Retrieved through Gramene (August 25, 2010)
LHP1GeneProductLOC_Os10g17770 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
LHYGeneProductLOC_Os08g06110Alternate Gene_ID: OsCCA1
LKP2GeneProductLOC_Os02g05700This is FBO8/ LOC_Os02g05700. Ortholog of At2G18915, LKP2 (77.4% Protein Similarity)(Gramene/NCBI); ZTL2 (PMID: 17132630);ZTLb (PMID: 20419097); LKP2 (mamatha-see ZTLb)
LRK1 GeneProductLOC_Os08g03240 (Rice Ensembl Gene)
LTPL112 GeneProductLOC_Os02g44310 (Rice Ensembl Gene)
LUXGeneProductLOC_Os01g74020Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
LUXGeneProductLOC_Os01g74020Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
LWDGeneProductLOC_Os02g32430Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
MADS18GeneProductLOC_Os07g41370Retrieved through Gramene (August 25, 2010)
MADS47GeneProductRetrieved through NCBI (August 25, 2010)
MADS61 GeneProductLOC_Os04g38770 (Rice Ensembl Gene)
MADS72 GeneProductLOC_Os03g14850 (Rice Ensembl Gene)
MAF1 GeneProductAT1G77080Retrieved through Gramene (August 25, 2010)
MAF2 GeneProductAT5G65050
MAF3 GeneProductAT5G65060Retrieved through Gramene/NCBI (August 25, 2010)
MAF4 GeneProductAT5G65070Retrieved through Gramene/NCBI (August 25, 2010)
MAF5 GeneProductRetrieved through Gramene/NCBI (August 25, 2010)
MSI1GeneProductLOC_Os03g43890Retrieved with Gramene (August 25, 2010)
MYB GeneProductLOC_Os08g43550 (Rice Ensembl Gene) Possible Arabidopsis WER ortholog
MYB29 GeneProductLOC_Os06g01670 (Rice Ensembl Gene)
NDPK2GeneProductLOC_Os12g36194
  • INTERACTS WITH PRMT5 TO PROMOTE VEGETATIVE GROWTH
  • Retrieved through NCBI/Gramene
NF-YA10aGeneProductLOC_Os03g44540 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA10bGeneProductLOC_Os07g06470 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA1GeneProductLOC_Os03g48970 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA2GeneProductLOC_Os12g42400 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA3GeneProductLOC_Os07g41720 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA4 GeneProductLOC_Os12g41880 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA5GeneProductLOC_Os02g53620 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA6GeneProductLOC_Os03g07880 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
NF-YA8GeneProductLOC_Os03g29760 (Rice Ensembl Gene)
NF-YB1GeneProductLOC_Os02g49410 (Rice Ensembl Gene) Retrieved through NCBI /Gramene/Phytozome (August 25, 2010)
NF-YB11GeneProductLOC_Os09g39490 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
NF-YB13GeneProductLOC_Os08g29500 (Rice Ensembl Gene)
  • Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • Closest to B13
NF-YB2GeneProductLOC_Os01g61810 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
NF-YB3 GeneProductLOC_Os05g49780 (Rice Ensembl Gene)
  • OsNF-YB1 is not the exact ortholog of AtNF-YB1
  • Retrieved through Gramene (August 25, 2010)
NF-YB4GeneProductLOC_Os05g38820 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
NF-YC10GeneProductLOC_Os03g63530 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
NF-YC11GeneProductLOC_Os05g41450 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
NF-YC13GeneProductLOC_Os01g08790 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
NF-YC1GeneProductLOC_Os03g14669 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
NF-YC2GeneProductLOC_Os02g07450 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
NF-YC2aGeneProductLOC_Os06g45640 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
NF-YC8GeneProductLOC_Os09g30310 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
OSE2GeneProductLOC_Os01g64730Retrieved through the Gramene (August 25, 2010)
OsABF2GeneProductLOC_Os06g10880Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
OsAREB3GeneProductLOC_Os05g41070Retrieved through Gramene (August 25, 2010)
OsCDF1GeneProductLOC_Os03g07360Retrieved through Gramene (August 25, 2010)
OsCO3GeneProductLOC_Os09g06464Retrieved through NCBI (August 25, 2010)
OsCRY1bGeneProductLOC_Os04g37920Retrieved through Gramene (August 25, 2010)
OsCam2GeneProductLOC_Os05g41210
OsHB1aGeneProductLOC_Os02g13310Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
OsHUA2GeneProductLOC_Os08g01054
OsLDGeneProductLOC_Os01g70810Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
OsMADS14GeneProductLOC_Os03g54160 (Rice Ensembl Gene) Retrieved through Gramene
OsMADS15GeneProductLOC_Os07g01820 (Rice Ensembl Gene) Retrieved through Gramene
OsMADS1GeneProductLOC_Os03g11614
OsMADS22GeneProductRetrieved through NCBI/Gramene
OsMADS27GeneProductLOC_Os02g36924 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
  • Specifies floral state by determining floral organ and meristem identities, with OsMADS1and OsMADS17. Mutants have retarded establishement of floral identity,have mosaic floral organs and palea acqures lemma identity
OsMADS29GeneProductLOC_Os02g07430
OsMADS31GeneProductLOC_Os04g52410Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
OsMADS3GeneProductLOC_Os01g10504
OsMADS50 GeneProductLOC_Os03g03070 (Rice Ensembl Gene)
OsMADS50GeneProductLOC_Os10g39130OsSOC1
OsMADS51GeneProductLOC_Os01g69850 (Rice Ensembl Gene) Retrieved through NCBI (August 25, 2010)
OsMADS56GeneProductLOC_Os10g39130Retrieved through Gramene (August 25, 2010)
OsMADS5GeneProductLOC_Os06g06750
OsMADS6GeneProductRetrieved through NCBI/Gramene (August 25, 2010)
OsMADS7GeneProductLOC_Os08g41950
OsMADS8GeneProductLOC_Os09g32948
OsMFT1 GeneProductLOC_Os06g30370Retrieved through Gramene
OsPEPGeneProductLOC_Os10g41440Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
OsPRP3GeneProductLOC_Os09g07500
OsSPL14GeneProductLOC_Os08g39890Retrieved through Gramene (August 25, 2010)
OsbZIP10GeneProductLOC_Os01g64000Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
PAF1GeneProductLOC_Os02g04100Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
PCFS4GeneProductLOC_Os08g08830Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
PFT1GeneProductLOC_Os09g13610Retrieved through Gramene/RAD-UCDavis (August 25, 2010)
PHDfL GeneProductLOC_Os02g09920 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, 16-Nov-2011
PHYAGeneProductLOC_Os03g51030Retrieved through Gramene (August 25, 2010)
PHYB/PHYDGeneProductLOC_Os03g19590 (Rice Ensembl Gene) Retrieved through Gramene
PHYBGeneProductLOC_Os03g19590Retrieved through Gramene
PHYCGeneProductLOC_Os03g54084Retrieved with Gramene (August 25, 2010)
PHYE GeneProductAT4G18130Retrieved through NCBI/Gramene (August 25, 2010)
PIE1GeneProductThis denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6
PIE1GeneProductLOC_Os02g46450Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
PIF7 GeneProductAT5G61270Retrieved through Gramene/NCBI (August 25, 2010)
PIN1OSGeneProductLOC_Os04g56800Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
POLA1 GeneProductLOC_Os01g64820 (Rice Ensembl Gene)
POLE1 GeneProductLOC_Os02g30800 (Rice Ensembl Gene)
PPR73GeneProductLOC_Os03g17570Retrieved through Gramene and NCBI (August 25, 2010)
PRMT5GeneProductLOC_Os02g04660
  • SKB1;Represses FLC by H4R3sme2 histone demethylation of promoter
  • Retrieved from Gramene (August 25, 2010)
PRR59GeneProductLOC_Os11g05930
RAV1-like1GeneProductLOC_Os05g47650Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
RBX1GeneProductLOC_Os01g01700Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
RCN1GeneProductLOC_Os11g05470Retrieved with Gramene (August 25, 2010)
RCN2GeneProductLOC_Os02g32950Retrieved with Gramene/NCBI (August 25, 2010)
REC14GeneProductLOC_Os11g43890Retrieved through Gramene (August 25, 2010)
RFT1GeneProductLOC_Os06g06300 (Rice Ensembl Gene) Paralog of Hd3a. Acts as a rice florigen under long days.
ROC5GeneProductLOC_Os02g45250Retrieved through Gramene (August 25, 2010)
SDG25GeneProductLOC_Os12g41900Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
SDG26GeneProductLOC_Os04g34976Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
SEF1GeneProductLOC_Os03g25260Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
SFR6 GeneProductLOC_Os10g35560 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, 16-Nov-2011
SINAT5GeneProductLOC_Os02g19140
  • Retrieved through Gramene (August 25, 2010)
  • Ubiquitinates LHY to degrade it and is inhibited by DET1 which stabilizes LHY
SLR1GeneProductLOC_Os03g49990Retrieved with Gramene (August 25, 2010)
SLR1GeneProductLOC_Os03g49990 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
SMZ GeneProductAT3G54990Retrieved through Gramene/NCBI (August 25, 2010)
SNBGeneProductLOC_Os07g13170 (Rice Ensembl Gene)
SNF2LGeneProductLOC_Os02g02290 (Rice Ensembl Gene) Partially redundant with autonomous pathway; acts through photoperiod pathway to suppress the floral promoters CO, FT and SOC1 and the floral repressor FLC. Symbol assigned by Mamatha Hanumappa, 16-Nov-2011
SNZ GeneProductAT2G39250Retrieved through Gramene/NCBI (August 25, 2010)
SPA1GeneProductLOC_Os05g49590
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
  • Arabi blast gives 05g
SPA2GeneProductLOC_Os01g52640
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
  • Arabi blast gives 01g
SPL13GeneProductLOC_Os07g32170Retrieved through Gramene/NCBI/Phytozome (August 25, 2010)
SPYGeneProductLOC_Os08g44510Retrieved with Gramene (August 25, 2010)
SRR1GeneProductLOC_Os05g02690
SRT2GeneProductLOC_Os12g07950Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/Phytozome/NCBI (August 25, 2010)
SUS2 GeneProductLOC_Os06g09450 (Rice Ensembl Gene)
TCPL1GeneProductLOC_Os02g42380Retrieved with Gramene
TICGeneProductLOC_Os07g38360Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
TOC1GeneProductLOC_Os02g40510
TOE1GeneProductLOC_Os05g03040Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
U2AF GeneProductLOC_Os05g48960 (Rice Ensembl Gene)
UV-DDB2 GeneProductLOC_Os01g04870 (Rice Ensembl Gene)
UV-DDBGeneProductLOC_Os05g51480Retrieved with Gramene (August 25, 2010)
VEFGeneProductLOC_Os09g13630Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI (August 25, 2010)
VIL2GeneProductLOC_Os02g05840Retrieved through Gramene (August 25, 2010)
VIL2GeneProductLOC_Os02g05840 (Rice Ensembl Gene) Retrieved through Gramene (August 25, 2010)
VIP2GeneProductLOC_Os05g06270Retrieved through Gramene (August 25, 2010)
VIP4aGeneProductLOC_Os12g38970Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
VRN1GeneProductLOC_Os12g40120 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
VRN2GeneProductLOC_Os9g13630 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Phytozome (August 25, 2010)
VRN5aGeneProductLOC_Os12g34850 (Rice Ensembl Gene) Symbol assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
WNK1 GeneProductLOC_Os07g38530 (Rice Ensembl Gene)
WNK4GeneProductLOC_Os02g45130Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene/NCBI/Gramene (August 25, 2010)
WNK8 GeneProductLOC_Os12g02250 (Rice Ensembl Gene)
WNK8a GeneProductLOC_Os11g02305 (Rice Ensembl Gene) Assigned by Mamatha Hanumappa, 20-Nov-2011
WNK8b GeneProductLOC_Os11g02300 (Rice Ensembl Gene) Assigned by Mamatha Hanumappa, 20-Nov-2011
ZOS1-05 GeneProductLOC_Os01g14010 (Rice Ensembl Gene)
ZOS1-20GeneProductLOC_Os01g67970Retrieved through Gramene (August 25, 2010)
ZOS9-03GeneProductLOC_Os09g13630 (Rice Ensembl Gene)
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010). Paralog of JMJ704.
  • Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF
ZOS9-19GeneProductLOC_Os09g38790
  • Alternate Gene ID: OsSUF4
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
ZTLaGeneProductLOC_Os06g47890
  • Alternate Gene_ID: ZTL2
  • Retrieved through NCBI (August 25, 2010)
ZnF36GeneProductLOC_Os05g41790
  • Gene ID assigned by Mamatha Hanumappa, cross-checked with Gramene (August 25, 2010)
  • OsFES1 is a different gene
bZIP23GeneProductLOC_Os02g52780
bZIP72GeneProductLOC_Os09g28310Retrieved through Gramene/NCBI (August 25, 2010)
bhlh102GeneProductLOC_Os12g41650Retrieved with Gramene (August 25, 2010)
bhlh102GeneProductLOC_Os12g41650 (Rice Ensembl Gene) Retrieved through NCBI/Gramene
bhlh105GeneProductLOC_Os01g18290Retrieved through Gramene (August 25, 2010)
bhlh79GeneProductLOC_Os02g47660Retrieved through Gramene (August 25, 2010)
miRNAGeneProduct

Annotated Interactions

No annotated interactions

Retrieved from "https://classic.wikipathways.org/index.php/Pathway:WP2178"
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