Citrate cycle (TCA cycle) (Mycobacterium tuberculosis)

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sdhCoxidoreductase alpha subunitfrdBicd1Alanine, aspartate and glutamate metabolismsdhAcis-AconitateaceEAlanine, aspartate and glutamate metabolismThiamin diphosphatefumarate reductase iron-sulfur subunit (EC:1.3.99.1)pdhBGlyoxylate and dicarboxylate metabolismSuccinatecpd:C05381Thiamin diphosphatepdhCko:K00164dehydrogenasepckApdhAsdhDFumarateAcetyl-CoAFatty acid biosynthesislpdAgltAsucDEnzyme N6-(lipoyl)lysine2-(alpha-Hydroxyethyl)thiamine diphosphatepdhB2-oxoglutarate ferredoxin oxidoreductase subunit betako:K00169 ko:K00170 ko:K00172 ko:K00171Phosphoenolpyruvateicd2Arginine and proline metabolismfrdDko:K01648dehydrogenaseko:K00030acnD-Glutamine and D-glutamate metabolismhypothetical proteinicd2(S)-MalatecitEgltA1ko:K00234 ko:K00235 ko:K00236 ko:K00237IsocitratemdhFatty acid metabolismsucCko:K00234 ko:K00235 ko:K00236 ko:K00237Fatty acid elongation in mitochondriaEnzyme N6-(lipoyl)lysinedlaToxidoreductaseEnzyme N6-(dihydrolipoyl)lysineValine, leucine and isoleucine degradationacnicd1Ascorbate and aldarate metabolismValine, leucine and isoleucine degradationlpdsdhAGlycolysis / Gluconeogenesisko:K00234 ko:K00235 ko:K00236 ko:K00237fumClpdAko:K00234 ko:K00235 ko:K00236 ko:K00237[Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysineko:K00169 ko:K00170 ko:K00172 ko:K00171OxaloacetatesdhBSuccinyl-CoAko:K01899 ko:K01900ko:K01610Tyrosine metabolismko:K00169 ko:K00170 ko:K00172 ko:K00171OxalosuccinateCitratepdhAaceE2-OxoglutaratepcaPyruvate[Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysineEnzyme N6-(dihydrolipoyl)lysineoxidoreductaselpdfrdAcitAko:K01899 ko:K01900ko:K00169 ko:K00170 ko:K00172 ko:K00171frdCko:K00164


Description

The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011]. Source: KEGG (http://www.genome.jp/kegg-bin/highlight_pathway?scale=1.0&map=map00020)

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History

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CompareRevisionActionTimeUserComment
126429view09:57, 28 April 2023EgonwLicense is CCZero
123530view06:32, 2 August 2022EgonwMade a pathway clickable
107215view14:31, 17 September 2019MaintBotChEBI identifier normalization
106910view13:38, 17 September 2019MaintBotHMDB identifier normalization
89183view03:50, 23 August 2016AriuttaOntology Term : 'classic metabolic pathway' added !
89182view03:50, 23 August 2016AriuttaOntology Term : 'citric acid cycle pathway' added !
87403view11:05, 22 July 2016MaintBotadded missing graphids
80115view21:07, 7 May 2015Khanspersupdated metabolites
80114view20:54, 7 May 2015Khansperscleanup and connect lines
80112view20:29, 7 May 2015KhanspersReverted to version '21:08, 26 February 2013' by Khanspers
71638view19:33, 17 October 2013MaintBotAutomated update of data sources
71165view07:26, 11 October 2013Mkutmonconnected interactions
69558view20:18, 8 July 2013MaintBotUpdated to 2013 gpml schema
59398view21:08, 26 February 2013MaintBotModified categories
43157view16:46, 3 June 2011Madhunannotate
43156view16:44, 3 June 2011Madhunnnotate
43155view16:41, 3 June 2011Madhunannotation
41494view01:11, 2 March 2011MaintBotRemoved redundant pathway information and comments
40201view16:18, 17 February 2011MadhunNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
(S)-MalateMetaboliteC00149 (Kegg Compound)
2-(alpha-Hydroxyethyl)thiamine diphosphateMetaboliteC05125 (Kegg Compound)
2-OxoglutarateMetaboliteC00026 (Kegg Compound)
2-oxoglutarate ferredoxin oxidoreductase subunit betaGeneProductRv2454c (TubercuList) Original kegg element: gene;2;mtu:Rv2454c mtu:Rv2455c
Acetyl-CoAMetaboliteC00024 (Kegg Compound)
Alanine, aspartate and glutamate metabolismPathwayWP1617 (WikiPathways)
Arginine and proline metabolismPathwayWP1621 (WikiPathways)
Ascorbate and aldarate metabolismPathwayWP1622 (WikiPathways)
CitrateMetaboliteC00158 (Kegg Compound)
D-Glutamine and D-glutamate metabolismPathwayWP1643 (WikiPathways)
Enzyme N6-(dihydrolipoyl)lysineMetaboliteC15973 (Kegg Compound)
Enzyme N6-(lipoyl)lysineMetaboliteC15972 (Kegg Compound)
Fatty acid biosynthesisPathwayWP1647 (WikiPathways)
Fatty acid elongation in mitochondriaPathway
Fatty acid metabolismPathwayWP1648 (WikiPathways)
FumarateMetaboliteC00122 (Kegg Compound)
Glycolysis / GluconeogenesisPathwayWP1660 (WikiPathways)
Glyoxylate and dicarboxylate metabolismPathwayWP1661 (WikiPathways)
IsocitrateMetaboliteC00311 (Kegg Compound)
OxaloacetateMetaboliteC00036 (Kegg Compound)
OxalosuccinateMetaboliteC05379 (Kegg Compound)
PhosphoenolpyruvateMetaboliteC00074 (Kegg Compound)
PyruvateMetaboliteC00022 (Kegg Compound)
SuccinateMetaboliteC00042 (Kegg Compound)
Succinyl-CoAMetaboliteC00091 (Kegg Compound)
Thiamin diphosphateMetaboliteC00068 (Kegg Compound)
Tyrosine metabolismPathwayWP1714 (WikiPathways)
Valine, leucine and isoleucine degradationPathwayWP1717 (WikiPathways)
[Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysineMetaboliteC16255 (Kegg Compound)
[Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysineMetaboliteC16254 (Kegg Compound)
aceEGeneProductRv2241 (TubercuList) Original kegg element: gene;51;mtu:Rv0843 mtu:Rv2241 mtu:Rv2496c mtu:Rv2497c
acnGeneProductRv1475c (TubercuList) Original kegg element: gene;15;mtu:Rv1475c
cis-AconitateMetaboliteC00417 (Kegg Compound)
citAGeneProductRv0889c (TubercuList) Original kegg element: gene;17;mtu:Rv0889c mtu:Rv0896 mtu:Rv1131
citEGeneProductRv2498c (TubercuList) Original kegg element: gene;60;mtu:Rv2498c mtu:Rv3075c
cpd:C05381MetaboliteC05381 (Kegg Compound)
dehydrogenaseGeneProductRv0843 (TubercuList) Original kegg element: gene;51;mtu:Rv0843 mtu:Rv2241 mtu:Rv2496c mtu:Rv2497c
dlaTGeneProductRv2215 (TubercuList) Original kegg element: gene;6;mtu:Rv2215
frdAGeneProductRv1552 (TubercuList) Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319
frdBGeneProductRv1553 (TubercuList) Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319
frdCGeneProductRv1554 (TubercuList) Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319
frdDGeneProductRv1555 (TubercuList) Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319
fumCGeneProductRv1098c (TubercuList) Original kegg element: gene;14;mtu:Rv1098c
fumarate reductase iron-sulfur subunit (EC:1.3.99.1)GeneProductRv0247c (TubercuList) Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319
gltA1GeneProductRv1131 (TubercuList) Original kegg element: gene;17;mtu:Rv0889c mtu:Rv0896 mtu:Rv1131
gltAGeneProductRv0896 (TubercuList) Original kegg element: gene;17;mtu:Rv0889c mtu:Rv0896 mtu:Rv1131
hypothetical proteinGeneProductRv3075c (TubercuList) Original kegg element: gene;60;mtu:Rv2498c mtu:Rv3075c
icd1GeneProductRv3339c (TubercuList) Original kegg element: gene;9;mtu:Rv0066c mtu:Rv3339c
icd2GeneProductRv0066c (TubercuList) Original kegg element: gene;9;mtu:Rv0066c mtu:Rv3339c
ko:K00030GeneProductK00030 (Kegg ortholog)
ko:K00164GeneProductK00164 (Kegg ortholog)
ko:K00169 ko:K00170 ko:K00172 ko:K00171GeneProductK00169... (Kegg ortholog)
ko:K00234 ko:K00235 ko:K00236 ko:K00237GeneProductK00234... (Kegg ortholog)
ko:K01610GeneProductK01610 (Kegg ortholog)
ko:K01648GeneProductK01648 (Kegg ortholog)
ko:K01899 ko:K01900GeneProductK01899... (Kegg ortholog)
lpdAGeneProductRv3303c (TubercuList) Original kegg element: gene;55;mtu:Rv0462 mtu:Rv0794c mtu:Rv3303c
lpdGeneProductRv0462 (TubercuList) Original kegg element: gene;55;mtu:Rv0462 mtu:Rv0794c mtu:Rv3303c
mdhGeneProductRv1240 (TubercuList) Original kegg element: gene;18;mtu:Rv1240
oxidoreductase alpha subunitGeneProductRv2455c (TubercuList) Original kegg element: gene;2;mtu:Rv2454c mtu:Rv2455c
oxidoreductaseGeneProductRv0794c (TubercuList) Original kegg element: gene;3;mtu:Rv0462 mtu:Rv0794c mtu:Rv3303c
pcaGeneProductRv2967c (TubercuList) Original kegg element: gene;19;mtu:Rv2967c
pckAGeneProductRv0211 (TubercuList) Original kegg element: gene;62;mtu:Rv0211
pdhAGeneProductEBMYCG00000002509 (Ensembl) Original kegg element: gene;53;mtu:Rv0843 mtu:Rv2241 mtu:Rv2496c mtu:Rv2497c
pdhAGeneProductRv2497c (TubercuList) Original kegg element: gene;51;mtu:Rv0843 mtu:Rv2241 mtu:Rv2496c mtu:Rv2497c
pdhBGeneProductRv2496c (TubercuList) Original kegg element: gene;53;mtu:Rv0843 mtu:Rv2241 mtu:Rv2496c mtu:Rv2497c
pdhCGeneProductRv2495c (TubercuList) Original kegg element: gene;57;mtu:Rv2495c
sdhAGeneProductRv0248c (TubercuList) Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319
sdhAGeneProductRv3318 (TubercuList) Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319
sdhBGeneProductRv3319 (TubercuList) Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319
sdhCGeneProductRv3316 (TubercuList) Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319
sdhDGeneProductRv3317 (TubercuList) Original kegg element: gene;1;mtu:Rv0247c mtu:Rv0248c mtu:Rv1552 mtu:Rv1553 mtu:Rv1554 mtu:Rv1555 mtu:Rv3316 mtu:Rv3317 mtu:Rv3318 mtu:Rv3319
sucCGeneProductRv0951 (TubercuList) Original kegg element: gene;7;mtu:Rv0951 mtu:Rv0952
sucDGeneProductRv0952 (TubercuList) Original kegg element: gene;7;mtu:Rv0951 mtu:Rv0952

Annotated Interactions

No annotated interactions

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