Endochondral ossification (Rattus norvegicus)

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1, 2Chondrocyte (pre)hypertrophyHypertrophyRemoval of extracellular matrixand invasion by bone cellsCathepsinsand CalpainsBMPsChondrocyte deathFull differentiationVascular invastionOsteoblasticdifferentiationChondrocyte proliferation?CartilageMineralisationRemoval of cartilage matrixDyingBoneintegrinsGsProliferationWNT signalingcanonical / non-canonicalKif3aBmpr1aSox6Ctsl1IhhCALM1OxygenSpp1Ptch1Runx3Serpinh1FGF18Fgfr1Ptch1Tgfb2Igf2Cdkn1cAlplBmp6PlatMgpPthlhDdr2Fgf2cAMPAcanFgfr3Tgfb1Timp3TNAPRunx2Thyroid hormoneBapx1Cst10GhrAdamts1Igf1rAkt1Bmp7ThraTgfb1Pthr1LOC312831Enpp1Hmgcs1Slc38a2Mmp13Runx2Chst11Col2a1Sox9Mmp9Mef2cCOL10A1Adamts4PthVegfaScinCab39TriiodothyronineThyroid hormoneThraAdamts5Hdac4FrzbGLI3PrkacaIgf1Growth hormoneIft88Runx2PlauStat1Stat5b


Description

No description

Comments

HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP474(r29737) with a 88% conversion rate.

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Quality Tags

Ontology Terms

 

Bibliography

  1. Belluoccio D, Bernardo BC, Rowley L, Bateman JF; ''A microarray approach for comparative expression profiling of the discrete maturation zones of mouse growth plate cartilage.''; Biochim Biophys Acta, 2008 PubMed Europe PMC Scholia
  2. Mackie EJ, Ahmed YA, Tatarczuch L, Chen KS, Mirams M; ''Endochondral ossification: how cartilage is converted into bone in the developing skeleton.''; Int J Biochem Cell Biol, 2008 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
116957view10:08, 16 May 2021EweitzModified title
107233view14:32, 17 September 2019MaintBotChEBI identifier normalization
106961view13:42, 17 September 2019MaintBotHMDB identifier normalization
87975view13:17, 25 July 2016SusanOntology Term : 'regulatory pathway' added !
72214view12:53, 27 October 2013EgonwFixed the ChEBI database name.
72174view22:17, 25 October 2013AlexanderPicoAdded missing metabolite identifiers.
69458view19:07, 8 July 2013MaintBotUpdated to 2013 gpml schema
41790view02:43, 2 March 2011MaintBotRemoved redundant pathway information and comments
34154view19:37, 9 December 2009MaintBotAutomatic update of empty xrefs
32311view13:21, 15 August 2009MaintBotFixed text labels
31904view12:48, 14 August 2009MaintBotFixed group labels
31340view20:26, 13 August 2009MaintBotFixed text labels
31006view01:03, 30 July 2009MaintBotNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
AcanGeneProduct58968 (Entrez Gene)
Adamts1GeneProduct79252 (Entrez Gene)
Adamts4GeneProduct66015 (Entrez Gene)
Adamts5GeneProduct304135 (Entrez Gene)
Akt1GeneProduct24185 (Entrez Gene)
AlplGeneProduct25586 (Entrez Gene)
Bapx1GeneProduct
Bmp6GeneProduct25644 (Entrez Gene)
Bmp7GeneProduct85272 (Entrez Gene)
Bmpr1aGeneProduct81507 (Entrez Gene)
CALM1GeneProduct24242 (Entrez Gene)
COL10A1GeneProduct25681 (Entrez Gene)
Cab39GeneProduct301574 (Entrez Gene)
Cdkn1cGeneProduct246060 (Entrez Gene)
Chst11GeneProduct314694 (Entrez Gene)
Col2a1GeneProduct25412 (Entrez Gene)
Cst10GeneProduct366219 (Entrez Gene)
  • Taken as human homologue of mouse Cst10
  • PMID: 13679380
Ctsl1GeneProduct25697 (Entrez Gene) Taken as homologue to mouse Cathepsin L (Ctsl)
Ddr2GeneProduct685781 (Entrez Gene)
Enpp1GeneProduct85496 (Entrez Gene)
FGF18GeneProduct29369 (Entrez Gene)
Fgf2GeneProduct54250 (Entrez Gene)
Fgfr1GeneProduct79114 (Entrez Gene)
Fgfr3GeneProduct84489 (Entrez Gene)
FrzbGeneProduct295691 (Entrez Gene)
GLI3GeneProduct140588 (Entrez Gene)
GhrGeneProduct25235 (Entrez Gene)
Growth hormoneGeneProduct
Hdac4GeneProduct363287 (Entrez Gene)
Hmgcs1GeneProduct29637 (Entrez Gene)
Ift88GeneProduct305918 (Entrez Gene)
Igf1GeneProduct24482 (Entrez Gene)
Igf1rGeneProduct25718 (Entrez Gene)
Igf2GeneProduct24483 (Entrez Gene)
IhhGeneProduct84399 (Entrez Gene)
Kif3aGeneProduct84392 (Entrez Gene)
LOC312831GeneProduct312831 (Entrez Gene)
Mef2cGeneProduct499497 (Entrez Gene)
MgpGeneProduct25333 (Entrez Gene)
Mmp13GeneProduct171052 (Entrez Gene)
Mmp9GeneProduct81687 (Entrez Gene)
OxygenMetaboliteHMDB01377 (HMDB)
PlatGeneProduct25692 (Entrez Gene)
PlauGeneProduct25619 (Entrez Gene)
PrkacaGeneProduct25636 (Entrez Gene)
Ptch1GeneProduct89830 (Entrez Gene)
PthGeneProduct24694 (Entrez Gene)
PthlhGeneProduct24695 (Entrez Gene)
Pthr1GeneProduct56813 (Entrez Gene)
Runx2GeneProduct367218 (Entrez Gene)
Runx3GeneProduct156726 (Entrez Gene)
ScinGeneProduct298975 (Entrez Gene) PMID: 17097081
Serpinh1GeneProduct29345 (Entrez Gene)
Slc38a2GeneProduct29642 (Entrez Gene)
Sox6GeneProduct293165 (Entrez Gene)
Sox9GeneProduct140586 (Entrez Gene)
Spp1GeneProduct25353 (Entrez Gene)
Stat1GeneProduct25124 (Entrez Gene)
Stat5bGeneProduct25126 (Entrez Gene)
TNAPGeneProduct
Tgfb1GeneProduct59086 (Entrez Gene)
Tgfb2GeneProduct81809 (Entrez Gene)
ThraGeneProduct81812 (Entrez Gene)
Thyroid hormoneMetabolite60311 (ChEBI)
Thyroid hormoneMetaboliteT4
Timp3GeneProduct25358 (Entrez Gene)
TriiodothyronineMetabolite24864 (ChEBI)
VegfaGeneProduct83785 (Entrez Gene)
cAMPMetaboliteHMDB00058 (HMDB)

Annotated Interactions

No annotated interactions
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