TCA cycle (Krebs cycle) (Arabidopsis thaliana)

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Description

Quality Tags

Ontology Terms

Bibliography

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History

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Compare	Revision	Action	Time	User	Comment
	123106	view	14:53, 3 July 2022	Egonw	Made a pathway clickable
	117252	view	10:00, 19 May 2021	Eweitz	Modified title
	111813	view	19:05, 8 September 2020	Egonw	Corrected the data source to match the identifier
	105902	view	11:36, 16 August 2019	Mkutmon	HMDB identifier normalization
	79786	view	15:54, 16 April 2015	Mkutmon	fixed unconnected line
	78386	view	10:22, 7 January 2015	MaintBot	added missing graphIds
	76230	view	13:45, 19 June 2014	Sbohler	All protein nodes are now annotated with UNIPROT IDs. Information about protein isoforms has been added.
	75332	view	14:48, 19 May 2014	Sbohler	Corrected translation destination of NAD-ME1 and 2.
	75325	view	13:35, 19 May 2014	Sbohler	Adapted font of "Mitochondrion" to match other pathways from same authors. Added RNA for CICDH.
	75323	view	13:10, 19 May 2014	Sbohler	Added cell border, organelle label and mRNAs for NAD-ME1 and NAD-ME2
	74204	view	07:28, 5 April 2014	Egonw	Removed a data source where no ID was given.
	73921	view	10:09, 4 March 2014	Anwesha
	73920	view	10:08, 4 March 2014	Anwesha	Modified description
	73919	view	09:59, 4 March 2014	Sbohler	Modified description
	73917	view	09:52, 4 March 2014	Anwesha	Added metabolite identifiers
	73910	view	09:03, 4 March 2014	Anwesha	added metabolite and pathway identifiers
	73909	view	09:01, 4 March 2014	Anwesha	Periodical save, work in progress
	73908	view	08:51, 4 March 2014	Anwesha	Periodical save, work in progress
	73882	view	21:55, 26 February 2014	MaintBot	Ontology Term : 'citric acid cycle pathway' added !
	73877	view	21:45, 26 February 2014	MaintBot	Fixed scaling issue
	73609	view	13:43, 4 February 2014	Sbohler	removal of excess objects
	73608	view	13:23, 4 February 2014	Anwesha	New pathway

External references

DataNodes

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Name	Type	Database reference	Comment
2-oxoglutarate	Metabolite
2-oxoglutarate dehydrogenase	Protein	1.2.4.2 (Enzyme Nomenclature)
ADP	Metabolite
ATP	Metabolite	HMDB00538 (HMDB)
Acetyl-CoA	Metabolite	HMDB01206 (HMDB)
CO2	Metabolite	HMDB01967 (HMDB)
CoA	Metabolite
FAD+	Metabolite	HMDB01248 (HMDB)
FADH2	Metabolite	HMDB01197 (HMDB)
Glutamate Biosynthesis	Pathway
Glycolysis	Pathway
H2O	Metabolite	HMDB02111 (HMDB)
NAD+	Metabolite	HMDB00902 (HMDB)
NADH	Metabolite	HMDB01487 (HMDB)
NADP+	Metabolite	HMDB00902 (HMDB)
NADPH	Metabolite	HMDB01487 (HMDB)
Succinyl-CoA	Metabolite	HMDB01022 (HMDB)
aconitase	Protein	4.2.1.3 (Enzyme Nomenclature)
citrate synthase	Protein	2.3.3.1 (Enzyme Nomenclature)
citrate	Metabolite	C00158 (KEGG Compound)
fumarase	Protein	4.2.1.2 (Enzyme Nomenclature)
fumarate	Metabolite
isocitrate	Metabolite
isocitrate dehydrogenase	Protein	1.1.1.41 (Enzyme Nomenclature)
isocitrate dehydrogenase	Protein	Q9SRZ6 (Uniprot-TrEMBL)
isocitrate	Metabolite	CHEBI:16087 (ChEBI)
malate	Metabolite
malate dehydrogenase	Protein	1.1.1.37 (Enzyme Nomenclature)
malic enzyme	Protein	1.1.1.38 (Enzyme Nomenclature)
oxaloacetate	Metabolite	CHEBI:16452 (ChEBI)
pyruvate dehydrogenase	Protein	1.2.1.51 (Enzyme Nomenclature)
pyruvate	Metabolite	CHEBI:15361 (ChEBI)
succinate	Metabolite
succinate dehydrogenase	Protein	1.3.99.1 (Enzyme Nomenclature)
succinyl-CoA synthetase	Protein	6.2.1.5 (Enzyme Nomenclature)

Annotated Interactions

No annotated interactions