Carotenoid biosynthesis (Oryza sativa)

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plastid stromacytosolNAD(P)+PPihydrogen donorO2antheraxanthinO2phytoene synthase(LOC_OS06G51290.1)zeta-carotenedesaturase(LOC_OS07G10490.1)L-dehydro-ascorbateH2Ophytofluenealpha-caroteneO2hydrogen donorzeaxanthinH2Ohydrogen donorphytoene synthase(LOC_OS06G51290.1)L-ascorbatephytoeneluteinH2ONADPHhydrogen acceptorviolaxanthinNADP+lycopene betacyclase(LOC_OS02G09750.1)H2OH2OO2prephytoenediphosphatehydrogen donorH2Ozeta-carotenegeranylgeranyldiphosphateO2zeaxanthin epoxidase(LOC_OS04G37619.1)H2OH2ONADP+NAD(P)Htrans-neoxanthinO2hydrogen donorH2Obeta-cryptoxanthinhydrogen acceptorbeta-carotenePPilycopene betacyclase(LOC_OS02G09750.1)O2hydrogen donorH+O2lycopene betacyclase(LOC_OS02G09750.1)gamma-caroteneNAD(P)+O2NADPHhydrogen acceptorhydrogen acceptorViolaxanthinde-epoxidasedelta-caroteneL-ascorbateH2Ohydrogen acceptorzeaxanthin epoxidase(LOC_OS04G37619.1)O2epsilon hydroxylase(LOC_OS10G39930.1)trans-lycopeneNAD(P)Hhydrogen acceptorH2OL-dehydro-ascorbateH+neurosporeneH2O


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History

CompareRevisionActionTimeUserComment
118152view10:40, 25 May 2021EweitzModified title
86994view14:39, 15 July 2016MkutmonOntology Term : 'carotenoid biosynthetic pathway' added !
82046view14:40, 8 September 2015Anweshafixing title, data source, & tagging incomplete pathways
80547view14:50, 25 June 2015AnweshaNew pathway

External references

DataNodes

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NameTypeDatabase referenceComment
Metabolite
H+MetaboliteCHEBI:15378 (ChEBI)
H2OMetaboliteCHEBI:15377 (ChEBI)
L-ascorbateMetaboliteCHEBI:38290 (ChEBI)
L-dehydro-ascorbateMetaboliteCHEBI:58539 (ChEBI)
NAD(P)+Metabolite4723652 (Reactome)
NAD(P)HMetabolite4723653 (Reactome)
NADP+MetaboliteCHEBI:18009 (ChEBI)
NADPHMetaboliteCHEBI:16474 (ChEBI)
O2MetaboliteCHEBI:15379 (ChEBI)
PPiMetaboliteCHEBI:29888 (ChEBI)
Violaxanthin de-epoxidaseProtein1121947 (Reactome) Converts violaxanthin into antheraxanthin.
alpha-caroteneMetaboliteCHEBI:28425 (ChEBI)
antheraxanthinMetaboliteCHEBI:27867 (ChEBI)
beta-caroteneMetaboliteCHEBI:17579 (ChEBI)
beta-cryptoxanthinMetaboliteCHEBI:10362 (ChEBI)
delta-caroteneMetaboliteCHEBI:27705 (ChEBI)
epsilon hydroxylase (LOC_OS10G39930.1)ProteinQ336V3 (Uniprot-TrEMBL) Converts epsilon-carotene into epsilon,epsilon-carotene-3-diol; ALSO converts epsilon,epsilon-carotene-3-diol into lactucaxanthin.
gamma-caroteneMetaboliteCHEBI:27740 (ChEBI)
geranylgeranyl diphosphateMetaboliteCHEBI:48861 (ChEBI)
hydrogen acceptorMetaboliteCHEBI:13193 (ChEBI)
hydrogen donorMetaboliteCHEBI:17499 (ChEBI)
luteinMetaboliteCHEBI:28838 (ChEBI)
lycopene beta

cyclase

(LOC_OS02G09750.1)		ProteinQ6YUU2 (Uniprot-TrEMBL) Converts trans-lycopene into gamma-carotene; ALSO converts gamma-carotene into beta-carotene; ALSO converts delta-carotene into alpha-carotene.
neurosporeneMetaboliteCHEBI:16833 (ChEBI)
phytoene synthase (LOC_OS06G51290.1)ProteinQ5Z5B7 (Uniprot-TrEMBL) Converts geranylgeranyl diphosphate into prephytoene diphosphate; ALSO converts prephytoene diphosphate into phytoene.
phytoeneMetaboliteCHEBI:8191 (ChEBI)
phytoflueneMetaboliteCHEBI:28129 (ChEBI)
prephytoene diphosphateMetaboliteCHEBI:17090 (ChEBI)
trans-lycopeneMetaboliteCHEBI:15948 (ChEBI)
trans-neoxanthinMetaboliteCHEBI:32446 (ChEBI)
violaxanthinMetaboliteCHEBI:35288 (ChEBI)
zeaxanthin epoxidase (LOC_OS04G37619.1)ProteinQ0JCU7 (Uniprot-TrEMBL) Converts zeaxanthin into antheraxanthin; ALSO converts antheraxanthin into violaxanthin.
zeaxanthinMetaboliteCHEBI:27547 (ChEBI)
zeta-carotene

desaturase

(LOC_OS07G10490.1)		ProteinQ0D7W4 (Uniprot-TrEMBL) Converts neurosporene into trans-lycopene.
zeta-caroteneMetaboliteCHEBI:28068 (ChEBI)

Annotated Interactions

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SourceTargetTypeDatabase referenceComment
1119781 (Reactome) Zeta-carotene is converted into neurosporene by enzymatic activity of an unknown gene product.
1119823 (Reactome) Geranylgeranyl diphosphate is converted into prephytoene diphosphate by enzymatic activity of Phytoene synthase.
1120038 (Reactome) Beta-carotene is converted into beta-cryptoxanthin by enzymatic activity of an uknown gene product.
1120187 (Reactome) Violaxanthin is converted into trans-neoxanthin by enzymatic activity of an unknown gene product.
1120465 (Reactome) Antheraxanthin is converted into violaxanthin by enzymatic activity of Zeaxanthin epoxidase.
1120471 (Reactome) Violaxanthin is converted into antheraxanthin by enzymatic activity of Violaxanthin de-epoxidase.
1120848 (Reactome) Trans-lycopene is converted into delta-carotene by enzymatic activity of an unknown gene product.
1120856 (Reactome) Trans-lycopene is converted into gamma-carotene by enzymatic activity of lycopene beta cyclase.
1121026 (Reactome) Delta-carotene is converted into alpha-carotene by enzymatic activity of lycopene beta cyclase.
1121182 (Reactome) Phytoene is converted into phytofluene by enzymatic activity of an unknown gene product.
1121279 (Reactome) Zeaxanthin is converted into antheraxanthin by enzymatic activity of Zeaxanthin epoxidase.
1121290 (Reactome) Antheraxanthin is converted into zeanthin by enzymatic activity of an unknown gene product.
1121334 (Reactome) Gamma-carotene is converted into beta-carotene by enzymatic activity of lycopene beta cyclase.
1121336 (Reactome) Neurosporene is converted into trans-lycopene by enzymatic activity of 9,9'-di-cis-zeta-carotene desaturase.
1121378 (Reactome)
1121385 (Reactome) Alpha-carotene is converted into zeinoxanthin by enzymatic activity of an unknown gene product.
1121480 (Reactome) Beta-cryptoxanthin is converted into zeaxanthin by enzymatic activity of an unknown gene product.
1121606 (Reactome) Prephytoene diphosphate is converted into phytoene by enzymatic activity of phytoene synthase.
1121675 (Reactome) Phytofluene is converted into zeta-carotene by enzymatic activity of an unknown gene product.
Arrow1121385 (Reactome)
H+1120465 (Reactome)
H+1121279 (Reactome)
H2OArrow1119781 (Reactome)
H2OArrow1120038 (Reactome)
H2OArrow1120465 (Reactome)
H2OArrow1120471 (Reactome)
H2OArrow1121182 (Reactome)
H2OArrow1121279 (Reactome)
H2OArrow1121290 (Reactome)
H2OArrow1121336 (Reactome)
H2OArrow1121378 (Reactome)
H2OArrow1121385 (Reactome)
H2OArrow1121480 (Reactome)
H2OArrow1121675 (Reactome)
L-ascorbate1120471 (Reactome)
L-ascorbate1121290 (Reactome)
L-dehydro-ascorbateArrow1120471 (Reactome)
L-dehydro-ascorbateArrow1121290 (Reactome)
NAD(P)+Arrow1120465 (Reactome)
NAD(P)+Arrow1121279 (Reactome)
NAD(P)H1120465 (Reactome)
NAD(P)H1121279 (Reactome)
NADP+Arrow1121378 (Reactome)
NADP+Arrow1121385 (Reactome)
NADPH1121378 (Reactome)
NADPH1121385 (Reactome)
O21119781 (Reactome)
O21120038 (Reactome)
O21120465 (Reactome)
O21121182 (Reactome)
O21121279 (Reactome)
O21121336 (Reactome)
O21121378 (Reactome)
O21121385 (Reactome)
O21121480 (Reactome)
O21121675 (Reactome)
PPiArrow1119823 (Reactome)
PPiArrow1121606 (Reactome)
Violaxanthin de-epoxidasemim-catalysis1120471 (Reactome)
alpha-carotene1121385 (Reactome)
alpha-caroteneArrow1121026 (Reactome)
antheraxanthin1120465 (Reactome)
antheraxanthin1121290 (Reactome)
antheraxanthinArrow1120471 (Reactome)
antheraxanthinArrow1121279 (Reactome)
beta-carotene1120038 (Reactome)
beta-caroteneArrow1121334 (Reactome)
beta-cryptoxanthin1121480 (Reactome)
beta-cryptoxanthinArrow1120038 (Reactome)
delta-carotene1121026 (Reactome)
delta-caroteneArrow1120848 (Reactome)
epsilon hydroxylase (LOC_OS10G39930.1)mim-catalysis1121378 (Reactome)
gamma-carotene1121334 (Reactome)
gamma-caroteneArrow1120856 (Reactome)
geranylgeranyl diphosphate1119823 (Reactome)
hydrogen acceptorArrow1119781 (Reactome)
hydrogen acceptorArrow1120038 (Reactome)
hydrogen acceptorArrow1121182 (Reactome)
hydrogen acceptorArrow1121336 (Reactome)
hydrogen acceptorArrow1121480 (Reactome)
hydrogen acceptorArrow1121675 (Reactome)
hydrogen donor1119781 (Reactome)
hydrogen donor1120038 (Reactome)
hydrogen donor1121182 (Reactome)
hydrogen donor1121336 (Reactome)
hydrogen donor1121480 (Reactome)
hydrogen donor1121675 (Reactome)
luteinArrow1121378 (Reactome)
lycopene beta

cyclase

(LOC_OS02G09750.1)		mim-catalysis1120856 (Reactome)
lycopene beta

cyclase

(LOC_OS02G09750.1)		mim-catalysis1121026 (Reactome)
lycopene beta

cyclase

(LOC_OS02G09750.1)		mim-catalysis1121334 (Reactome)
neurosporene1121336 (Reactome)
neurosporeneArrow1119781 (Reactome)
phytoene synthase (LOC_OS06G51290.1)mim-catalysis1119823 (Reactome)
phytoene synthase (LOC_OS06G51290.1)mim-catalysis1121606 (Reactome)
phytoene1121182 (Reactome)
phytoeneArrow1121606 (Reactome)
phytofluene1121675 (Reactome)
phytoflueneArrow1121182 (Reactome)
prephytoene diphosphate1121606 (Reactome)
prephytoene diphosphateArrow1119823 (Reactome)
trans-lycopene1120848 (Reactome)
trans-lycopene1120856 (Reactome)
trans-lycopeneArrow1121336 (Reactome)
trans-neoxanthinArrow1120187 (Reactome)
violaxanthin1120187 (Reactome)
violaxanthin1120471 (Reactome)
violaxanthinArrow1120465 (Reactome)
zeaxanthin epoxidase (LOC_OS04G37619.1)mim-catalysis1120465 (Reactome)
zeaxanthin epoxidase (LOC_OS04G37619.1)mim-catalysis1121279 (Reactome)
zeaxanthin1121279 (Reactome)
zeaxanthinArrow1121290 (Reactome)
zeaxanthinArrow1121480 (Reactome)
zeta-carotene

desaturase

(LOC_OS07G10490.1)		mim-catalysis1121336 (Reactome)
zeta-carotene1119781 (Reactome)
zeta-caroteneArrow1121675 (Reactome)
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