AtMetExpress overview (Arabidopsis thaliana)
From WikiPathways
Description
No description
Quality Tags
Ontology Terms
Bibliography
- Sumner LW, Lei Z, Nikolau BJ, Saito K; ''Modern plant metabolomics: advanced natural product gene discoveries, improved technologies, and future prospects.''; Nat Prod Rep, 2015 PubMed Europe PMC Scholia
- Saito K, Yonekura-Sakakibara K, Nakabayashi R, Higashi Y, Yamazaki M, Tohge T, Fernie AR; ''The flavonoid biosynthetic pathway in Arabidopsis: structural and genetic diversity.''; Plant Physiol Biochem, 2013 PubMed Europe PMC Scholia
- Fukushima A, Kusano M; ''Recent progress in the development of metabolome databases for plant systems biology.''; Front Plant Sci, 2013 PubMed Europe PMC Scholia
History
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External references
DataNodes
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Name | Type | Database reference | Comment |
---|---|---|---|
2-Oxo-glutaric acid | Metabolite | HMDB00208 (HMDB) | |
3-MSOP | Metabolite | C08405 (KEGG Compound) | |
3-MTP | Metabolite | C08412 (KEGG Compound) | |
3-Phosphoglyceric acid | Metabolite | HMDB00807 (HMDB) | |
4-MSOB | Metabolite | C08410 (KEGG Compound) | |
4-MTB | Metabolite | C08409 (KEGG Compound) | |
5-MSOP | Metabolite | C08400 (KEGG Compound) | |
5-MTP | Metabolite | C08401 (KEGG Compound) | |
6-MSOH | Metabolite | C00007348 (KEGG Compound) | |
6-MTH | Metabolite | C00007844 (KEGG Compound) | |
7-MSOH | Metabolite | C00007352 (KEGG Compound) | |
7-MTH | Metabolite | C00007353 (KEGG Compound) | |
8-MSOO | Metabolite | C00007355 (KEGG Compound) | |
8-MTO | Metabolite | C00007356 (KEGG Compound) | |
A10 | Metabolite | ||
A11 | Metabolite | ||
A1 | Metabolite | C20493 (KEGG Compound) |
|
A2 | Metabolite | ||
A3 | Metabolite | ||
A4 | Metabolite | ||
A5 | Metabolite | ||
A6 | Metabolite | ||
A7 | Metabolite | ||
A8 | Metabolite | ||
A9 | Metabolite | ||
Acetyl-CoA | Metabolite | HMDB01206 (HMDB) | |
Alanine | Metabolite | HMDB00161 (HMDB) | |
Alpha-Tocopherol | Metabolite | HMDB01893 (HMDB) | |
Amino acid metabolism | Pathway | ||
Arabinose | Metabolite | HMDB29942 (HMDB) | |
Arginine | Metabolite | HMDB00517 (HMDB) | |
Aromatic amino acid metabolism | Pathway | ||
Ascorbic acid | Metabolite | HMDB00044 (HMDB) | |
Asparagine | Metabolite | HMDB00168 (HMDB) | |
Aspartic acid | Metabolite | HMDB00191 (HMDB) | |
Benzoic acid | Metabolite | HMDB01870 (HMDB) | |
Beta-Alanine | Metabolite | HMDB00056 (HMDB) | |
Beta-Sitosterol | Metabolite | HMDB00852 (HMDB) | |
C14:0 | Metabolite | HMDB00806 (HMDB) | |
C16:0 | Metabolite | HMDB00220 (HMDB) | |
C18:0 | Metabolite | HMDB00827 (HMDB) | |
C18:2 | Metabolite | HMDB00673 (HMDB) | |
C18:3 | Metabolite | HMDB01388 (HMDB) | |
C24:0 | Metabolite | HMDB02003 (HMDB) | |
Caffeic acid | Metabolite | HMDB01964 (HMDB) | |
Campesterol | Metabolite | HMDB02869 (HMDB) | |
Cholesterol | Metabolite | HMDB00067 (HMDB) | |
Citric acid | Metabolite | HMDB00094 (HMDB) | |
Cyanidin | Metabolite | HMDB02708 (HMDB) | |
Cysteine | Metabolite | HMDB00574 (HMDB) | |
Cystine | Metabolite | HMDB00192 (HMDB) | |
DAG | Metabolite | C00165 (KEGG Compound) | |
DGDG | Metabolite | 28495919 (Chemspider) | |
Dehydroascorbic acid | Metabolite | HMDB01264 (HMDB) | |
Dihydrouracil | Metabolite | HMDB00076 (HMDB) | |
Ethanolamine | Metabolite | HMDB00149 (HMDB) | |
F14 | Metabolite | ||
F15 | Metabolite | ||
F19 | Metabolite | ||
F1 | Metabolite | C16981 (KEGG Compound) | |
F2 | Metabolite | ||
F20 | Metabolite | ||
F23 | Metabolite | ||
F24 | Metabolite | C01750 (KEGG Compound) | |
F25 | Metabolite | ||
F27 | Metabolite | ||
F28 | Metabolite | ||
F29 | Metabolite | ||
F3 | Metabolite | ||
F30 | Metabolite | ||
F32 | Metabolite | ||
F4 | Metabolite | ||
F5 | Metabolite | ||
F6 | Metabolite | ||
F7 | Metabolite | C19796 (KEGG Compound) | |
F8 | Metabolite | ||
Fatty acid synthesis | Pathway | ||
Flavonoid biosynthesis | Pathway | ||
Fructose 1,6-bisphosphate | Metabolite | HMDB01058 (HMDB) | |
Fructose-6-phosphate | Metabolite | HMDB00124 (HMDB) | |
Fructose | Metabolite | HMDB00660 (HMDB) | |
Fumaric acid | Metabolite | HMDB00134 (HMDB) | |
GABA | Metabolite | HMDB00112 (HMDB) | |
Galactinol | Metabolite | HMDB05826 (HMDB) | |
Galacturonic acid | Metabolite | HMDB02545 (HMDB) | |
Gluconic acid | Metabolite | HMDB00625 (HMDB) | |
Glucose-6-phosphate | Metabolite | HMDB01401 (HMDB) | |
Glucose | Metabolite | HMDB00122 (HMDB) | |
Glucosinolate biosynthesis | Pathway | ||
Glutamic acid | Metabolite | HMDB00148 (HMDB) | |
Glutamine | Metabolite | HMDB00641 (HMDB) | |
Glutaric acid | Metabolite | HMDB00661 (HMDB) | |
Glutathione | Metabolite | HMDB00125 (HMDB) | |
Glyceric acid | Metabolite | HMDB00139 (HMDB) | |
Glycerol 2-phosphate | Metabolite | C02979 (KEGG Compound) | |
Glycerol 3-phosphate | Metabolite | HMDB00126 (HMDB) | |
Glycine | Metabolite | HMDB00123 (HMDB) | |
Glycolysis | Pathway | ||
Histidine | Metabolite | HMDB00177 (HMDB) | |
Homocysteine | Metabolite | HMDB00742 (HMDB) | |
Homoserine | Metabolite | HMDB00719 (HMDB) | |
Hydroxylamine | Metabolite | HMDB03338 (HMDB) | |
IndoleGSL | Metabolite | ||
Isocitric acid | Metabolite | HMDB00193 (HMDB) | |
Isoleucine | Metabolite | HMDB00172 (HMDB) | |
Isorhamnetin | Metabolite | HMDB02655 (HMDB) | |
Kaempferol | Metabolite | HMDB05801 (HMDB) | |
Lactic acid | Metabolite | HMDB00190 (HMDB) | |
Leucine | Metabolite | HMDB00687 (HMDB) | |
Long chain organic acids | Pathway | ||
Lysine | Metabolite | HMDB00182 (HMDB) | |
MGDG | Metabolite | 4696840 (Chemspider) | |
Malic acid | Metabolite | HMDB00744 (HMDB) | |
Maltose | Metabolite | HMDB00163 (HMDB) | |
Mannose | Metabolite | HMDB00169 (HMDB) | |
Methionine | Metabolite | HMDB00696 (HMDB) | |
Myo-inositol 1-phosphate | Metabolite | HMDB00213 (HMDB) | |
Myoinositol | Metabolite | HMDB00211 (HMDB) | |
Nicotianamine | Metabolite | C05324 (KEGG Compound) | |
Nicotinic acid | Metabolite | HMDB01488 (HMDB) | |
Ornithine | Metabolite | HMDB00214 (HMDB) | |
Oxaloacetic acid | Metabolite | HMDB00223 (HMDB) | |
PA | Metabolite | C00416 (KEGG Compound) | |
PC | Metabolite | 4946694 (Chemspider) | |
PE | Metabolite | 7825685 (Chemspider) | |
PG | Metabolite | 8593139 (Chemspider) | |
PI | Metabolite | 20058759 (Chemspider) | |
Phenylalanine | Metabolite | HMDB00159 (HMDB) | |
Phosphoenolpyruvic acid | Metabolite | HMDB00263 (HMDB) | |
Phytol | Metabolite | HMDB02019 (HMDB) | |
Proline | Metabolite | HMDB00162 (HMDB) | |
Putrescine | Metabolite | HMDB01414 (HMDB) | |
Pyruvic acid | Metabolite | HMDB00243 (HMDB) | |
Quercetin | Metabolite | HMDB05794 (HMDB) | |
Quinic acid | Metabolite | HMDB03072 (HMDB) | |
Raffinose | Metabolite | HMDB03213 (HMDB) | |
Rhamnose | Metabolite | HMDB00849 (HMDB) | |
Ribose | Metabolite | HMDB00283 (HMDB) | |
S-Adenosylmethionine | Metabolite | HMDB01185 (HMDB) | |
SQDG | Metabolite | 140119 (Chemspider) | |
Salicylic acid | Metabolite | HMDB01895 (HMDB) | |
Serine | Metabolite | HMDB00187 (HMDB) | |
Shikimic acid | Metabolite | HMDB03070 (HMDB) | |
Spermidine | Metabolite | HMDB01257 (HMDB) | |
Stigmasterol | Metabolite | HMDB00937 (HMDB) | |
Succinic acid | Metabolite | HMDB00254 (HMDB) | |
Succinyl-CoA | Metabolite | HMDB01022 (HMDB) | |
Sucrose | Metabolite | C00089 (KEGG Compound) | |
Sugar metabolism | Pathway | ||
TAG | Metabolite | 4575640 (Chemspider) | |
TCA cycle | Pathway | ||
Threonic acid | Metabolite | HMDB00943 (HMDB) | |
Threonine | Metabolite | HMDB00167 (HMDB) | |
Trehalose | Metabolite | HMDB00975 (HMDB) | |
Triethanolamine | Metabolite | HMDB32538 (HMDB) | |
Tryptamine | Metabolite | HMDB00303 (HMDB) | |
Tryptophan | Metabolite | HMDB00929 (HMDB) | |
Tyramine | Metabolite | HMDB00306 (HMDB) | |
Tyrosine | Metabolite | HMDB00158 (HMDB) | |
Uracil | Metabolite | HMDB00300 (HMDB) | |
Valine | Metabolite | HMDB00883 (HMDB) | |
Xylose | Metabolite | HMDB00098 (HMDB) | |
cis-Aconitic acid | Metabolite | HMDB00072 (HMDB) | |
glycerate 3-phosphate | Metabolite | HMDB00807 (HMDB) | |
lysoPC | Metabolite | 24766528 (Chemspider) |
Annotated Interactions
No annotated interactions