Calvin-Benson cycle (Arabidopsis thaliana)
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Description
The cycle was discovered by Melvin Calvin, James Bassham, and Andrew Benson at the University of California, Berkeley[3] by using the radioactive isotope carbon-14.
Photosynthesis occurs in two stages in a cell. In the first stage, light-dependent reactions capture the energy of light and use it to make the energy-storage and transport molecules ATP and NADPH. The Calvin cycle uses the energy from short-lived electronically excited carriers to convert carbon dioxide and water into organic compounds[4] that can be used by the organism (and by animals that feed on it). This set of reactions is also called carbon fixation. The key enzyme of the cycle is called RuBisCO. In the following biochemical equations, the chemical species (phosphates and carboxylic acids) exist in equilibria among their various ionized states as governed by the pH.
The enzymes in the Calvin cycle are functionally equivalent to most enzymes used in other metabolic pathways such as gluconeogenesis and the pentose phosphate pathway, but they are found in the chloroplast stroma instead of the cell cytosol, separating the reactions. They are activated in the light (which is why the name "dark reaction" is misleading), and also by products of the light-dependent reaction. These regulatory functions prevent the Calvin cycle from being respired to carbon dioxide. Energy (in the form of ATP) would be wasted in carrying out these reactions that have no net productivity.
The sum of reactions in the Calvin cycle is the following:
3 CO 2 + 6 NADPH + 6 H+ + 9 ATP → glyceraldehyde-3-phosphate (G3P) + 6 NADP+ + 9 ADP + 3 H 2O + 8 Pi (Pi = inorganic phosphate) Hexose (six-carbon) sugars are not a product of the Calvin cycle. Although many texts list a product of photosynthesis as C 6H 12O 6, this is mainly a convenience to counter the equation of respiration, where six-carbon sugars are oxidized in mitochondria. The carbohydrate products of the Calvin cycle are three-carbon sugar phosphate molecules, or "triose phosphates", namely, glyceraldehyde-3-phosphate (G3P).
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Name | Type | Database reference | Comment |
---|---|---|---|
1,3-bisphosphoglycerate | Metabolite | ||
2-phosphoglycolate | Metabolite | ||
2H+ | Metabolite | CHEBI:18276 (ChEBI) | |
3-phosphoglycerate | Metabolite | C00197 (KEGG Compound) | |
ADP | Metabolite | ||
ATP | Metabolite | HMDB00538 (HMDB) | |
CO2 + H2O | Metabolite | ||
CO2 | Metabolite | HMDB01967 (HMDB) | |
Dihydroxyacetone phosphate | Metabolite | HMDB01473 (HMDB) | |
Glycolysis | Pathway | WP2621 (WikiPathways) | |
H+ | Metabolite | CHEBI:15378 (ChEBI) | |
H2CO3 | Metabolite | ||
H2O | Metabolite | HMDB02111 (HMDB) | |
NADP+ | Metabolite | HMDB00217 (HMDB) | |
NADPH | Metabolite | HMDB00221 (HMDB) | |
O2 | Metabolite | ||
Photorespiration | Pathway | ||
Pi | Metabolite | ||
RuBisCO LSU | Protein | O03042 (Uniprot-TrEMBL) | |
RuBisCO SSU1A | Protein | P10795 (Uniprot-TrEMBL) | |
RuBisCO SSU1B | Protein | P10796 (Uniprot-TrEMBL) | |
RuBisCO SSU2B | Protein | P10797 (Uniprot-TrEMBL) | |
RuBisCO SSU3B | Protein | P10798 (Uniprot-TrEMBL) | |
RuBisCO activase | Protein | P10896 (Uniprot-TrEMBL) | |
Starch Metabolism | Pathway | WP2622 (WikiPathways) | |
aldolase 1 | Protein | O65581 (Uniprot-TrEMBL) | |
aldolase 2 | Protein | Q944G9 (Uniprot-TrEMBL) | |
carbonic anhydrase 1 | Protein | P27140 (Uniprot-TrEMBL) | |
carbonic anhydrase 2 | Protein | P42737 (Uniprot-TrEMBL) | |
erythrose 4-phosphate | Metabolite | HMDB01321 (HMDB) | |
fructose 1,6-bisphosphate | Metabolite | HMDB01058 (HMDB) | |
fructose 6-phosphate | Metabolite | HMDB00124 (HMDB) | |
fructose-1,6-bisphosphatase | Protein | P25851 (Uniprot-TrEMBL) | |
fructose-1,6-bisphosphate | Metabolite | HMDB01058 (HMDB) | |
glyceraldahyde-3-phosphate | Metabolite | ||
glyceraldehyde-3-phosphate dehydrogenase 1 | Protein | P25856 (Uniprot-TrEMBL) | |
glyceraldehyde-3-phosphate dehydrogenase 2 | Protein | Q9LPW0 (Uniprot-TrEMBL) | |
phosphoglycerate kinase 1 | Protein | Q9LD57 (Uniprot-TrEMBL) | |
phosphoglycerate kinase 2 | Protein | P50318 (Uniprot-TrEMBL) | |
phosphoribulokinase | Protein | P25697 (Uniprot-TrEMBL) | |
ribose 5-phosphate | Metabolite | HMDB01548 (HMDB) | |
ribulose 5-phosphate 3-epimerase | Protein | Q9SAU2 (Uniprot-TrEMBL) | |
ribulose 5-phosphate isomerase 3 | Protein | Q9S726 (Uniprot-TrEMBL) | |
ribulose 5-phosphate isomerase 4 | Protein | Q9FI13 (Uniprot-TrEMBL) | |
ribulose 5-phosphate | Metabolite | HMDB00618 (HMDB) | |
ribulose-1,5-bisphosphate | Metabolite | ||
sedoheptulose 1,7-bisphosphatase | Protein | P46283 (Uniprot-TrEMBL) | |
sedoheptulose 1,7-bisphosphate | Metabolite | ||
sedoheptulose 7-phosphate | Metabolite | HMDB01068 (HMDB) | |
transketolase 1 | Protein | Q8RWV0 (Uniprot-TrEMBL) | |
transketolase 2 | Protein | F4IW47 (Uniprot-TrEMBL) | |
triose phosphate isomerase | Protein | Q9SKP6 (Uniprot-TrEMBL) | |
xyluloase-5-phosphate | Metabolite |
Annotated Interactions
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