Vitamin A and carotenoid metabolism (Bos taurus)

From WikiPathways

Revision as of 16:39, 11 July 2016 by Egonw (Talk | contribs)
(diff) ←Older revision | Current revision (diff) | Newer revision→ (diff)
Jump to: navigation, search
4, 10, 15?ROL-binding proteinsNucleusPPAR pathwaysgap junction communicationCytochrome P450 familyDietEnterocyteRE + dietary lipids?Blood?RE + dietary lipidschylomicronRetinal pigment epithelium specific?ROL=retinol; RAL=retinaldehyde, RA = retinoic acid, RE = retinyl ester, RPE = retinal pigment epithelium ??Rhodopsin formation11-cis binding proteinRA-binding proteinsRE + dietary lipidsLiver/other organsNuclear receptorsSULT1A1AstaxanthinALDH1A313,14 dehydroretinal11-cis-Retinol9-cis-Retinoic acidMAPK1CYP26B1all-trans RetinolVitamin ASCARB14-oxo-Retinoic acidBetacaroteneCRABP1LuteinBCO2BCMO1RDH5SCARB1ALDH1A3NPC1L1LRATRetinyl esterLPLDGAT1RDH8RETSATall-trans Retinoic acidVitamin A acidRBP4LRATSULT2B1ALDH1A1Beta-CryptoxanthinRetinolVitamin A9-cis-RetinalRBP1Zeaxanthin13,14 dehydro RABCMO1CYP26A1RDH5RPE6511-cis-RetinalADH4ViolaxanthinRBP7RXRGall-trans RetinalBCMO1ALDH1A1RDH12All-trans-13,14-dihydroretinolRARBRLBP1BetacaroteneABCG8CYP2E1RetinolVitamin AVitamin D3RDH12Cd36RARGRXRACanthaxanthinLycopeneALDH1A2RetinalVitamin A aldehydeALDH1A2RDH10Adh1Alpha-CaroteneRARADHRS3Retinyl esterSDR16C5beta 10' apocorotenalAWAT2ABCG5BetacaroteneBetacaroteneCRABP2RXRBall-transe 4-oxo RARBP29-cis-Retinol2, 7-9, 11...1, 3, 173, 145, 6, 13, 16


Description

This pathway is about carotenoid and vitamin A metabolism. The initial version was created by the NuGO focusteam on Carotenoid metabolism. It was used to test a text mining workflow which added some additional entities (see Waagmeester et al. 2009).

Comments

HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP716(79968) with a 100.0% conversion rate.

Try the New WikiPathways

View approved pathways at the new wikipathways.org.

Quality Tags

Ontology Terms

 

Bibliography

View all...
  1. Micozzi MS, Brown ED, Edwards BK, Bieri JG, Taylor PR, Khachik F, Beecher GR, Smith JC Jr; ''Plasma carotenoid response to chronic intake of selected foods and beta-carotene supplements in men.''; Am J Clin Nutr, 1992 PubMed Europe PMC Scholia
  2. Ruhl CE, Everhart JE; ''Relation of elevated serum alanine aminotransferase activity with iron and antioxidant levels in the United States.''; Gastroenterology, 2003 PubMed Europe PMC Scholia
  3. Handelman GJ, Dratz EA, Reay CC, van Kuijk JG; ''Carotenoids in the human macula and whole retina.''; Invest Ophthalmol Vis Sci, 1988 PubMed Europe PMC Scholia
  4. Waagmeester A, Pezik P, Coort S, Tourniaire F, Evelo C, Rebholz-Schuhmann D; ''Pathway enrichment based on text mining and its validation on carotenoid and vitamin A metabolism.''; OMICS, 2009 PubMed Europe PMC Scholia
  5. Hidiroglou M, Williams CJ; ''Interrelationships among liposoluble vitamins in ruminants.''; Am J Vet Res, 1986 PubMed Europe PMC Scholia
  6. Amir H, Karas M, Giat J, Danilenko M, Levy R, Yermiahu T, Levy J, Sharoni Y; ''Lycopene and 1,25-dihydroxyvitamin D3 cooperate in the inhibition of cell cycle progression and induction of differentiation in HL-60 leukemic cells.''; Nutr Cancer, 1999 PubMed Europe PMC Scholia
  7. Huet F, Semama D, Maingueneau C, Charavel A, Nivelon JL; ''Vitamin A deficiency and nocturnal vision in teenagers with cystic fibrosis.''; Eur J Pediatr, 1997 PubMed Europe PMC Scholia
  8. Boosalis MG, Snowdon DA, Tully CL, Gross MD; ''Acute phase response and plasma carotenoid concentrations in older women: findings from the nun study.''; Nutrition, 1996 PubMed Europe PMC Scholia
  9. Czeczuga-Semeniuk E, Wolczynski S, Markiewicz W; ''Preliminary identification of carotenoids in malignant and benign neoplasms of the breast and surrounding fatty tissue.''; Neoplasma, 2003 PubMed Europe PMC Scholia
  10. Balmer JE, Blomhoff R; ''Gene expression regulation by retinoic acid.''; J Lipid Res, 2002 PubMed Europe PMC Scholia
  11. Olmedilla B, Granado F, Blanco I, Rojas-Hidalgo E; ''Seasonal and sex-related variations in six serum carotenoids, retinol, and alpha-tocopherol.''; Am J Clin Nutr, 1994 PubMed Europe PMC Scholia
  12. VandenLangenberg GM, Brady WE, Nebeling LC, Block G, Forman M, Bowen PE, Stacewicz-Sapuntzakis M, Mares-Perlman JA; ''Influence of using different sources of carotenoid data in epidemiologic studies.''; J Am Diet Assoc, 1996 PubMed Europe PMC Scholia
  13. Torma H, Rollman O, Binderup L, Michaelsson G; ''Vitamin D analogs affect the uptake and metabolism of retinol by human epidermal keratinocytes in culture.''; J Investig Dermatol Symp Proc, 1996 PubMed Europe PMC Scholia
  14. Sies H, Stahl W, Sundquist AR; ''Antioxidant functions of vitamins. Vitamins E and C, beta-carotene, and other carotenoids.''; Ann N Y Acad Sci, 1992 PubMed Europe PMC Scholia
  15. Bendich A, Olson JA; ''Biological actions of carotenoids.''; FASEB J, 1989 PubMed Europe PMC Scholia
  16. Johansson S, Melhus H; ''Vitamin A antagonizes calcium response to vitamin D in man.''; J Bone Miner Res, 2001 PubMed Europe PMC Scholia
  17. Khachik F, Beecher GR, Goli MB, Lusby WR, Smith JC Jr; ''Separation and identification of carotenoids and their oxidation products in the extracts of human plasma.''; Anal Chem, 1992 PubMed Europe PMC Scholia

History

CompareRevisionActionTimeUserComment
116513view10:46, 7 May 2021EweitzModified title
105969view11:49, 16 August 2019MaintBotHMDB identifier normalization
86817view16:39, 11 July 2016EgonwNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
11-cis-RetinalMetaboliteHMDB0002152 (HMDB)
11-cis-RetinolMetaboliteHMDB0006216 (HMDB)
13,14 dehydro RAMetabolite
13,14 dehydroretinalMetabolite
4-oxo-Retinoic acidMetaboliteHMDB0006285 (HMDB)
9-cis-RetinalMetaboliteHMDB0006218 (HMDB)
9-cis-Retinoic acidMetaboliteHMDB0002369 (HMDB)
9-cis-RetinolMetaboliteHMDB0006217 (HMDB)
ABCG5GeneProductENSBTAG00000016365 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:64240
ABCG8GeneProductENSBTAG00000016366 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:64241
ADH4GeneProductENSBTAG00000034139 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:127
ALDH1A1GeneProductENSBTAG00000008103 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:216
ALDH1A2GeneProductENSBTAG00000010119 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8854
ALDH1A3GeneProductENSBTAG00000009125 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:220
AWAT2GeneProductENSBTAG00000012281 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:158835
Adh1GeneProductENSBTAG00000034189 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:124
All-trans-13,14-dihydroretinolMetaboliteHMDB0011618 (HMDB)
Alpha-CaroteneMetaboliteHMDB0003993 (HMDB)
AstaxanthinMetaboliteHMDB0002204 (HMDB)
BCMO1GeneProductENSBTAG00000001026 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:53630
BCO2GeneProductENSBTAG00000034193 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:83875
Beta-CryptoxanthinMetaboliteHMDB0002268 (HMDB)
BetacaroteneMetaboliteHMDB0000561 (HMDB)
CRABP1GeneProductENSBTAG00000012909 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1381
CRABP2GeneProductENSBTAG00000005716 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1382
CYP26A1GeneProductENSBTAG00000021118 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1592
CYP26B1GeneProductENSBTAG00000012212 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:56603
CYP2E1GeneProductENSBTAG00000018365 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1571
CanthaxanthinMetaboliteHMDB0003154 (HMDB)
Cd36GeneProductENSBTAG00000014220 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:948
DGAT1ProteinENSBTAG00000026356 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8694
DHRS3GeneProductENSBTAG00000024493 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9249
LPLGeneProductENSBTAG00000012855 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:4023
LRATGeneProductENSBTAG00000017167 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = En:ENSG00000121207
LuteinMetaboliteHMDB0003233 (HMDB)
LycopeneMetaboliteHMDB0003000 (HMDB)
MAPK1GeneProductENSBTAG00000010312 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5594
NPC1L1GeneProductENSBTAG00000044146 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:29881
RARAGeneProductENSBTAG00000012500 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5914
RARBGeneProductENSBTAG00000011518 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5915
RARGGeneProductENSBTAG00000007592 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5916
RBP1GeneProductENSBTAG00000020028 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5947
RBP2GeneProductENSBTAG00000015056 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5948
RBP4GeneProductENSBTAG00000000442 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5950
RBP7GeneProductENSBTAG00000015574 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:116362
RDH10GeneProductENSBTAG00000020143 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:157506
RDH12GeneProductENSBTAG00000012838 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:145226
RDH5GeneProductENSBTAG00000011927 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5959
RDH8GeneProductENSBTAG00000010188 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:50700
RETSATGeneProductENSBTAG00000021934 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:54884
RLBP1GeneProductENSBTAG00000033721 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6017
RPE65GeneProductENSBTAG00000020494 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6121
RXRAGeneProductENSBTAG00000017851 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6256
RXRBGeneProductENSBTAG00000000602 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6257
RXRGGeneProductENSBTAG00000016801 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6258
Retinal Vitamin A aldehydeMetaboliteHMDB0001358 (HMDB)
Retinol Vitamin AMetaboliteHMDB0000305 (HMDB)
Retinyl esterMetaboliteHMDB0003598 (HMDB)
SCARB1GeneProductENSBTAG00000014269 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:949
SDR16C5GeneProductENSBTAG00000018570 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:195814
SULT1A1GeneProductENSBTAG00000008635 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6817
SULT2B1GeneProductENSBTAG00000045498 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6820
ViolaxanthinMetaboliteHMDB0003101 (HMDB)
Vitamin D3MetaboliteHMDB0000876 (HMDB)
ZeaxanthinMetaboliteHMDB0002789 (HMDB)
all-trans RetinalMetaboliteHMDB0001358 (HMDB)
all-trans Retinoic acid Vitamin A acidMetaboliteHMDB0001852 (HMDB)
all-trans Retinol Vitamin AMetaboliteHMDB0000305 (HMDB)
all-transe 4-oxo RAMetabolite
beta 10' apocorotenalMetabolite

Annotated Interactions

No annotated interactions
Personal tools