Pentose phosphate pathway in senescent cells (Homo sapiens)
From WikiPathways
Description
The pentose phosphate pathway is an important route for glucose oxidation. This pathway is divided over 2 different branches; the non-oxidative and the oxidative. The oxidative branch supports the regeneration of reduced NADPH, while converting glucose-6-phosphate into ribulose-5-phosphate and CO2 in an unidirectional way. This branch is also linked to glycolysis at the glucose-6-phosphate level, while the non-oxidative branch is linked to glycolysis in a bidirectional way, depending on the availability of the intermediates glyceraldehyde-3-phosphate and fructose-6-phosphate. This non-oxidative branch converts pentose phosphates into phosphorylated ketones and aldoses (Almeida et al., 2018). During this process, ribose-5-phosphate is produced, which is an important precursor for nucleotide synthesis. The regeneration of the NADPH by the oxidative branch, is regulated by the NADP+/NADPH ratio. When this ratio is lower, due to lower levels of NADPH, the regeneration of NADPH is stimulated in order to maintain the balance (Clement et al., 2019). In case of senescence, OIS heightens this ratio, while proliferative exhaustion-induced senescence lowers this ratio. Furthermore, p53 lowers glycolysis by lowering the level of fructose-2,6-bisphosphate. The PPP is also upregulated due to oxidative stress and by conditions of low stress induced by P53, which is symptomatic of PE-induced senescence (Zhang et al., 2016). Another study by Wu et al. (2017) showed that one of the rate-limiting enzymes, 6-phosphogluconate dehydrogenase (6PGDH), is upregulated in OIS, due to which the PPP is also upregulated again.
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Ontology Terms
Bibliography
- Birgit Veldman; ''Metabolic hallmarks of cellular senescence: highlighting the role of intracellular pathways in various senescent phenotypes''; , 2020
- Clement J, Wong M, Poljak A, Sachdev P, Braidy N; ''The Plasma NAD+ Metabolome Is Dysregulated in "Normal" Aging.''; Rejuvenation Res, 2019 PubMed Europe PMC Scholia
- Zhang ZZ, Lee EE, Sudderth J, Yue Y, Zia A, Glass D, Deberardinis RJ, Wang RC; ''Glutathione Depletion, Pentose Phosphate Pathway Activation, and Hemolysis in Erythrocytes Protecting Cancer Cells from Vitamin C-induced Oxidative Stress.''; J Biol Chem, 2016 PubMed Europe PMC Scholia
- Ana S. Almeide, Nuno L. Soares, Catarina O. Sequeira, Sofia A. Pereira, Ursula Sonnewald, Helena L.A. Vieira; ''Improvement of neuronal differentiation by carbon monoxide: Role of pentose phosphate pathway''; Elsevier, 2018 PubMed Europe PMC Scholia
- Wu M, Ye H, Shao C, Zheng X, Li Q, Wang L, Zhao M, Lu G, Chen B, Zhang J, Wang Y, Wang G, Hao H; ''Metabolomics-Proteomics Combined Approach Identifies Differential Metabolism-Associated Molecular Events between Senescence and Apoptosis.''; J Proteome Res, 2017 PubMed Europe PMC Scholia
History
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External references
DataNodes
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Name | Type | Database reference | Comment |
---|---|---|---|
2-deoxy-D-ribose-5-phosphate | Metabolite | ||
5-phospho-D-ribose-1-pyrophosphoric acid | Metabolite | ||
6-Phospho-D-gluconate | Metabolite | CHEBI:48928 (ChEBI) | |
6-phosphogluconolactonase | Protein | M0R0U3 (Uniprot-TrEMBL) | |
6-phosphogluconolactonate dehydrogenase | Protein | ||
AMP | Metabolite | CHEBI:16027 (ChEBI) | |
ATP | Metabolite | CHEBI:30616 (ChEBI) | |
D-Erythrose-4-phosphate | Metabolite | 585-18-2 (CAS) | |
D-Fructose-6-Phosphate | Metabolite | Q27096303 (Wikidata) | |
D-Glucose-6-Phosphate | Metabolite | 59-56-3 (CAS) | |
D-Ribose-5-phosphate | Metabolite | 3615-55-2 (CAS) | |
D-Ribulose-5-phosphate | Protein | C9J9T0 (Uniprot-TrEMBL) | |
D-Xylulose-5-phosphate | Metabolite | CHEBI:16332 (ChEBI) | |
D-glucono-1,5-lactone-6-phosphate | Metabolite | 2641-81-8 (CAS) | |
D-glyceraldehyde-3-phosphate | Metabolite | CHEBI:70817 (ChEBI) | |
D-glyceraldehyde-3-phosphate | Metabolite | Q26992303 (Wikidata) | |
D-ribose-1-phosphate | Metabolite | CHEBI:48462 (ChEBI) | |
D-sedoheptulose-7-phosphate | Metabolite | 2646-35-7 (CAS) | |
Deoxyribose-phophate aldolase | Protein | ||
Glycolysis | Pathway | WP534 (WikiPathways) | |
H+ | Metabolite | CHEBI:15378 (ChEBI) | |
NADP+/NADPH | |||
NADP+ | Metabolite | CHEBI:18009 (ChEBI) | |
NADPH | Metabolite | HMDB00221 (HMDB) | |
Oncogene Induced Senescence | Pathway | ||
PE-Induced Senescence | Pathway | ||
Phosphoglucomutase | Protein | E7ENQ8 (Uniprot-TrEMBL) | |
Purine metabolism | Pathway | ||
Pyramidine metabolism | Pathway | ||
Ribose phophate isomerase | Protein | ||
Ribose-phosphate pyrophosphokinase | Protein | A0A0B4J207 (Uniprot-TrEMBL) | |
Ribulose-phosphate-3-epimerase | Protein | ||
Transaldolase | Protein | A0A140VK56 (Uniprot-TrEMBL) | |
Transketolase | Protein | A0A0B4J1R6 (Uniprot-TrEMBL) | |
[CO2] | Metabolite | CHEBI:16526 (ChEBI) | |
acetaldehyde | Metabolite | CHEBI:15343 (ChEBI) | |
glucose-6-phosphate 1-dehydrogenase | Protein | ||
p53 | Metabolite | CHEBI:77731 (ChEBI) |
Annotated Interactions
No annotated interactions