Exercise-induced circadian regulation (Bos taurus)

From WikiPathways

Revision as of 00:59, 14 December 2016 by Khanspers (Talk | contribs)
Jump to: navigation, search
TranscriptionmHrtsmHrts, mLvrsmHrtsMetabolismmLvrs,p SCNpmHrtsCell CycleStructural/CytoskeletonmSCNpmLvrsmLvrsmHrts mLvrpmSCNpSignalingChaperonemHrts LvrspmHrtsmLvrs,pCry2mLvrpmHrtsOthermLvrs,pmLvrs,pmHrtsmHrtsmLvrpmLvrpmLvrp, mSCNpDNA/RNA BindingmHrts mLvrsmLvrpmSCNpmLvrs,pmSCNpmLvrsmHrts mLvrsmHrts mLvrs,p mSCNmHrts mLvrs,pmLvrsCrymHrtsmSCNpmSCNpmLvrpNucleusmLvrpProtein ModificationCry1mLvrs,pmHrts mLvrs, mSCNpmHrts mLvrs,p mSCNpmLvrsPermLvrsmHrtsmHrtsmHrtsOrtholog references:mLvrp mSCNpmHrtsmLvrp mSCNp21PSMA4HSPA8CBX3EIF4G2PPP2CBIDI1NCKAP1TAB2PER2SUMO1PIGFTUBB3AZIN1CLDN5QKINR1D2PPP1R3CBOLA-DMAVAPASUMO3FAM47E-STBD1ERC2KLF9CRY1MYF6DNAJA1UGP2DAZAP2NCOA4CEBPBSF3A3PER1CRY2UCP3ETV6PURACLOCKBTG1H2BRBPMSHERPUD1ARNTLGSTM3GFRA1G0S2TOB1GSTP1ZFRPer2LREE-BoxPer1LREE-Box


Description

Human genes regulated in the diurnal comparison with orthologues that display circadian regulation in mouse heart and liver (Panda 2002, Storch 2002), and SCN (Panda 2002). The 608 significantly regulated (P < 0.05) hSkM genes identified in the diurnal comparison (0800 h and 2000 h) were subjected to an additional statistical filter of absolute fold change > 20% (n = 239) and linked to mouse circadianly regulated orthologues. This pathway represents the resultant 44 putative hSkM circadianly regulated genes; L, promoter for the light-responsive element; E, E-box (Clock/Bmal1 promoter). Orthologue information is denoted to the left of the gene boxes: mHrts and mLvrs, mouse orthologue was circadianly regulated as described (Storch 2002) in mouse heart or liver, respectively; mLvrp and mSCNp, mouse orthologue was diurnally regulated as described (Panda 2002) in mouse liver or SCN, respectively.

Comments

GenMAPP notes 
Time- and exercise-dependent gene regulation in human skeletal muscle

Alexander C Zambon, Erin L McDearmon, Nathan Salomonis, Karen M Vranizan, Kirsten L Johansen, Deborah Adey, Joseph S Takahashi, Morris Schambelan, Bruce R Conklin
Genome Biology 4(10): R61
http://genomebiology.com/2003/4/10/R61
Published 25 September 2003

HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP410(69903) with a 97.0% conversion rate.

Try the New WikiPathways

View approved pathways at the new wikipathways.org.

Quality Tags

Ontology Terms

 

Bibliography

  1. Panda S, Antoch MP, Miller BH, Su AI, Schook AB, Straume M, Schultz PG, Kay SA, Takahashi JS, Hogenesch JB; ''Coordinated transcription of key pathways in the mouse by the circadian clock.''; Cell, 2002 PubMed Europe PMC Scholia
  2. Storch KF, Lipan O, Leykin I, Viswanathan N, Davis FC, Wong WH, Weitz CJ; ''Extensive and divergent circadian gene expression in liver and heart.''; Nature, 2002 PubMed Europe PMC Scholia

History

CompareRevisionActionTimeUserComment
117510view11:05, 21 May 2021EweitzModified title
90755view00:59, 14 December 2016KhanspersModified title
80838view15:28, 30 June 2015MkutmonNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
ARNTLGeneProductENSBTAG00000013029 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:406
AZIN1GeneProductENSBTAG00000007943 (Ensembl)
  • 101002 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:51582
BOLA-DMAGeneProductENSBTAG00000015730 (Ensembl)
  • 162346 f at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:3108
BTG1GeneProductENSBTAG00000020330 (Ensembl)
  • 93104 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:694
CBX3GeneProductENSBTAG00000005540 (Ensembl)
  • 100405 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:11335
CEBPBGeneProduct92925 at
CLDN5GeneProductENSBTAG00000022020 (Ensembl)
  • 104516 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7122
CLOCKGeneProductENSBTAG00000044044 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9575
CRY1GeneProductENSBTAG00000010149 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1407
CRY2GeneProductENSBTAG00000021223 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1408
DAZAP2GeneProductENSBTAG00000004349 (Ensembl)
  • 94454 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9802
DNAJA1GeneProductENSBTAG00000016265 (Ensembl)
  • 97261 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:3301
EIF4G2GeneProductENSBTAG00000020308 (Ensembl)
  • 100535 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:1982
ERC2GeneProductENSBTAG00000010029 (Ensembl)
  • 93829 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:26059
ETV6GeneProductENSBTAG00000014605 (Ensembl)
  • 93866 s at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2120
FAM47E-STBD1GeneProductENSBTAG00000010389 (Ensembl)
  • 104116 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8987
G0S2GeneProductENSBTAG00000047766 (Ensembl)
  • 97531 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:50486
GFRA1GeneProductENSBTAG00000019297 (Ensembl)
  • 93872 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2674
GSTM3GeneProductENSBTAG00000001842 (Ensembl)
  • 97681 f at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2947
GSTP1GeneProductENSBTAG00000003548 (Ensembl)
  • 99583 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:2950
H2BGeneProductENSBTAG00000031886 (Ensembl)
  • 93833 s at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8341
HERPUD1GeneProductENSBTAG00000016896 (Ensembl)
  • 95057 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9709
HSPA8GeneProductENSBTAG00000013162 (Ensembl)
  • 96564 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:3312
IDI1GeneProductENSBTAG00000004075 (Ensembl)
  • 96269 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:3422
KLF9GeneProductENSBTAG00000016229 (Ensembl)
  • 93527 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:687
MYF6GeneProductENSBTAG00000014003 (Ensembl)
  • 102265 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:4618
NCKAP1GeneProductENSBTAG00000033662 (Ensembl)
  • 95508 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:10787
NCOA4GeneProductENSBTAG00000019565 (Ensembl)
  • 97843 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8031
NR1D2GeneProductENSBTAG00000018024 (Ensembl)
  • 99076 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9975
PER1GeneProductENSBTAG00000003889 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5187
PER2GeneProductENSBTAG00000045685 (Ensembl) HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:8864
PIGFGeneProductENSBTAG00000015719 (Ensembl)
  • 104725 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5281
PPP1R3CGeneProductENSBTAG00000014831 (Ensembl)
  • 93933 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5507
PPP2CBGeneProductENSBTAG00000009245 (Ensembl)
  • 101101 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5516
PSMA4GeneProductENSBTAG00000014440 (Ensembl)
  • 97459 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5685
PURAGeneProductENSBTAG00000008881 (Ensembl)
  • 103501 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:5813
QKIGeneProductENSBTAG00000011593 (Ensembl)
  • 95096 at (mouse)
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9444
RBPMSGeneProductENSBTAG00000033727 (Ensembl)
  • 103888 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:11030
SF3A3GeneProductENSBTAG00000007299 (Ensembl)
  • 96029 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:10946
SUMO1GeneProductENSBTAG00000009859 (Ensembl)
  • 101091 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7341
SUMO3GeneProductENSBTAG00000017321 (Ensembl)
  • 95424 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:6612
TAB2GeneProductENSBTAG00000013454 (Ensembl)
  • 160309 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:23118
TOB1GeneProductENSBTAG00000000546 (Ensembl)
  • 99532 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:10140
TUBB3GeneProductENSBTAG00000023730 (Ensembl)
  • 94835 f at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:10381
UCP3GeneProductENSBTAG00000005259 (Ensembl)
  • 93392 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7352
UGP2GeneProductENSBTAG00000000111 (Ensembl)
  • 94481 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:7360
VAPAGeneProductENSBTAG00000017279 (Ensembl)
  • 94889 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:9218
ZFRGeneProductENSBTAG00000008414 (Ensembl)
  • 104050 at
  • HomologyConvert: Homo sapiens to Bos taurus: Original ID = L:51663

Annotated Interactions

No annotated interactions
Personal tools