Seed development (Arabidopsis thaliana)

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24Go ahead! Move these interactors into the pathwayAPS2aGENE BASKETSimilar toUp-regulatesMADS-boxChloroplastic/Plastidic ComplexBindingcarbon partitioning during seed developmentAbiotic StressYeast-2-Hybrid supported bait to prey bindingIron DeficiencyActivation; Up-regulationBoxes distinguish different groups of proteins (some proteins are assigned to more than 1 group)Known to be important for seed development but no interactions found Biotic StressHormone relatedKEYSeed DevelopmentSelf interactions Category (biotic, abiotic, etc) yet to be assignedAT4G19720CYP76C6AT4G1975047AT2G14710CYP76C4AT3G49190ATNAS247AT4G197604747BHLH03844RACK1C_ATPGL34CYCB1;54747AtHsp90.4AT1G03670CYP76C175AT3G49210AT3G16580NAS1AT4G19800AT1G21440AT2G30460SUS1AT4G24590PRB1ATSPP1CRU2ATAPRL6PSBO127, 79HSP81-3CRU2PP2A-2AT5G47480FBA1ARD1UBC1AT3G55060BZO2H1CKX2AT3G06620ROC1CYCB1;3BHLH100ASP1PP2A-3AHA1WRKY17AT5G48250AT1G63170AT4G32000ATMYC-2NAS4AT1G48860MYB6547AT3G492004747PAKRP1UGT74F1ARD1CYP76C3CRU2AT2G18110AtcwINV4CYCD4;2ORA59ATIREG1ATHB12APUM11CSN5BAT3G5594047AT4G19820AT4G03460SEN2ATSPP1ATHB12AT1G32430BZO2H1TEM1AT2G3046075CML2344AT5G61550ADL6AT1G48630CRU2AT1G62660C ALXDH2PP2A-2DAD2CRU2AT3G61700MPK2NAC053AGL14CALAT1G62660AT4G2224027, 67PGL34SGT1AADK1SUS169, 73AT2G18110ATKDSA2AtcwINV4AT3G54030AT1G09640AtcwINV4SUS1AT4G1039020EIL1CRU2PCNA1bZIP16AT2G24420AT1G09640AT3G029308, 71, 75GSR2MTACP14444, 7444RPK-TMK1 precursorAT2G39300Luc7-like 2IAA1Sci2sks17CYCD4;1AHOXUNE10AGL19BZO2H4AT1G63220CDKA1anac103VIP1AT3G17850EIN3UGPATHB7CYCA1;1APT1ATDAD1MT2bSPKSPS1FBMY85875AT1G74240AT2G47060AT1G60900ZF-like44LOC_Os08g04580HCF173DPE2AT5G49710BMY7SSI1eIFiso4G1AT2G17550KAB1AT1G04770PROLM26C3H1SUS6GPA1ILR1CIN4CIN74458YSL1513, 14, 29, 36, 80Bam 835, 56, 74FIBATAMY1AT1G14710SWEET3double-stranded beta-helix domainMYB33AtAGAL2TRAB1SAL1 SUT3ATAMY1CRU1AT1G22040AT4G19200PROLM2858SUT1EXPB223, 44, 64AGL844AT1G06890ING1ATERF4PR1RACK1AAtPHR1GPT2Rac4444AT1G77060UCH3RBEM6SS335, 44, 56, 74AAP6AT1G30230ABI513, 29DIP1LOC_Os04g533504735, 44, 56, 7444445844BMY344SUS6PKT3ZIP1074LTPL109FKF1GBSSIIHMG147PIP5K9COL944EXPB4WCRKC1AtHsp90.2LEC2ARF1BMY2AT5G44080ATARD2PPDKTAP46AGL6AT4G32600AT3G01490AT4G03500SVPAT2G05830Flavin containing monooxygenase 3-likeTUBB3PitATAMY1ISA3APS1BZO2H4VIP1-likeRAB18UGT74F1AT2G36950ATBT1SEN1CRINKLY427, 67Wx1AT1G77670AT1G06890AT2G28440GF14FMPK147TCH2AT2G46420FBA244PPDKNAC5Ubi75PROLM 2444BMY9Jasmonate-induced proteinSS2AT5G2594035PAKRP1L44SNAC1LOC_Os03g55130 CWINV244NFXL147, 68PUM84744TEM2EBP8944AT1G56560prx6135, 56, 74ALDH11A3AT2G35900KinesinAT2G3695079GRF7AT2G35840AT1G12840PMA2BMY112, 27, 40, 44, 67...MCM2E3-Ubi LigaseAT5G02230BT3NAC2PIOsIAA1344GCPE26BMY3ABI3ATBETAFRUCT4AT3G60320CDKA-244RALF24PGI144, 70WRKY11Ghd7 PBZ1AT4G25160DUF151CYP450PSAD-1Retrotransposon AT5G59210AT1G80570ATVDAC2SUS3ADG2DOF ZFMADS 1AT2G4213044AT3G29320PP2A-B58RPS20AT3G05500ATAF1AT1G3023044ATPU1NAS2BMY7USP1ATMTAN244Terpene cyclasesBHLH039ATAMY166YSL2AT2G25220AT3G12630IDS1/ MT4AATARD244AT4G3226044SEP3APL2PSAK20DET3SSIV44AT5G354604458CYP76C2AT2G35840CIN5GLN1;144GLT1SUS4AP1ATHB7JA cmtrMLA1044APL1AT1G70820AT1G56700ATGSNOR1PP2A-1BBTI4PPROL 14 EPHD Zn-fingerAT4G24060SBE2.2APL4/ AGPL444ATXDH1AMY3AtkdsA1PCNA2GRF7IAA31anac075RBCLAT3G156704458CYCB1;2AT2G46140GABA permeaseSUS4SCL844CKX4AT1G565604444Amy2A44CRU1CRU1AT1G20810SSII-344IREG247WRKY 55AT4G33150ALDH7B4STA1AT5G52580PSBO2AREB3RPBFPAP85Oryzain alpha ProteaseICLMADS 13RIC1SUVR4SSII-2AT1G33260AT5G59750CRPLOC_Os03g07360ADK2494444KRP3BT1-2AT1G766604747SSIVCIB22EMB2729Oryzain gamma ProteaseATOPT3AT4G31340msrB-169, 73AT1G22410AGCF1PP2A-455ZOS1-15AT1G57720RAR1SUT4CRU1EFEAT5G5305044AT1G47390NFU4GPT2-3ALDH10A8APRL4SUT5AT5G05010AP1GDSL-like Lipase44UBC2AT1G55550CTR1-likeUBP23IAA958SAM cmtrMADS 54444DMAS1AT5G42740DREB1B47ISA2Sub9GF14Aflavanone 3-hydroxylasePPDKGL3bHLH60AT5G36160DUF584PSBCAT5G50100CRU1NAS3EDM1AT3G29010AT5G4749044CYP716A1ENODL935, 56AT1G47640BTB/POZ 7144SSP5MADS 2244NAC4SMT1AT2G21130CDF2RCADPK4AGL44CWINV259AT5G53390ASKTHETAGDSL-like LipaseLOC_Os01g627408, 71, 75PHS2SUT2SPS-ZmFructose-6-phosphate 1-phosphotransferaseDEP13, 29, 3617, 21ATAMY1CRU1UGPCSN5AERF1544AT1G7842058SSIVb-1,3-Glucanase CACTA, En/Spm AT1G1190027, 79PHT4;3BEISPS-HvOsPRP1AT5G16730CWINV2AT3G15670PP2A-1ADG1AGL6AT1G57720AT3G44620ELF9TyrKATBETAFRUCT4AT4G19810WRKY40SEP3ISA1IMPA-2AT4G17100LOC_Os01g14110Disease resistance-likeAT1G67890scpl40GRF7SS3LOC_Os03g5694044NB-ARC domain proteinAT1G27461SUS4AT2G45300HSP70HSP40PSB29SPS-So44AP311, 26AT1G12760RUBQ1bZIP68AT5G59010PLC2CRL1NAC 10AT3G20800PMI1OCP3Bam 3At-A/N-InvEPAT1AGD6MPK5AT3G29130SBEIIaIntegrase4439, 7117, 215874664424, 44, 69474435, 5674312834, 41, 46, 635975314447784447472, 77444417, 2115, 785847, 6847664427, 67444475472858444444827, 40, 6758447828, 584427, 44, 6747447447442813, 14, 29, 36, 804444582844444435, 56204444444427, 6047447528444447754434, 52449, 25, 3744585847445844, 69444423, 44, 64844, 72445844444774473155444444354758444444357910, 34444444474418, 45, 534734, 637544834, 35, 41, 46, 52444, 14, 17, 21, 65344, 74, 794758754444445958444444475844, 69584444, 704457584944354413, 29, 36474444444435, 56584743, 556058744444, 7444, 6444444441, 44, 46, 62, 6344444444474410, 3444584744, 69745844447, 574426584444785844474734, 35, 41, 46, 524744517, 10, 34, 4624, 6119444444588, 71, 75447447445831, 50442, 16, 244435, 44, 56, 744434, 46, 63, 76442947, 48474735, 56, 74755873144444444476611, 26444444584444474434, 46, 52512, 27, 40, 44, 67...71443084444444735, 568, 71, 75728444447444444, 588444958584758287444662, 24, 33, 54, 7811, 26444442, 6634, 6358444444584469, 7344444444334774441, 34444455, 62477, 10, 34, 4622448441, 34, 4158757, 44, 57, 634735, 56, 74444444, 7458324447444444444444444434, 63444434, 634731, 504447444435, 44, 56, 7475444447444434, 46, 634713, 29444734, 63445844447, 46, 5247797444754444583835318, 71, 7528, 5844444427, 79754444586, 24, 7158583158584434, 5244844474429, 58444424, 444434, 6344444428, 5834, 631, 7, 34444444811, 262934, 46, 527144754444744444RAG-156CR4SSA13535, 56APG244Inhibition; Down-regulationCo-expressionDPE1LOC_Os02g538905744Seed Development


Description

The projected Arabidopsis network with rice homologs highlighted in green color (Supplemental File S5_output.gpml).

Comments

 
Arabidopsis thaliana, projected from Oryza sativa; Supp.File S5_output.gpml

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  73. She KC, Kusano H, Koizumi K, Yamakawa H, Hakata M, Imamura T, Fukuda M, Naito N, Tsurumaki Y, Yaeshima M, Tsuge T, Matsumoto K, Kudoh M, Itoh E, Kikuchi S, Kishimoto N, Yazaki J, Ando T, Yano M, Aoyama T, Sasaki T, Satoh H, Shimada H; ''A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality.''; Plant Cell, 2010 PubMed Europe PMC Scholia
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History

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CompareRevisionActionTimeUserComment
134217view08:02, 17 July 2024EgonwRemoved template comments
125284view16:29, 31 January 2023LarsgwAdd DOI to reference
117251view09:59, 19 May 2021EweitzModified title
81183view14:19, 31 July 2015Mkutmonfixed unconnected lines
81182view14:13, 31 July 2015MaintBotremoved invalid character
78384view10:22, 7 January 2015MaintBotadded missing graphIds
64562view17:42, 29 May 2013PjaiswalModified description
64560view17:36, 29 May 2013PjaiswalModified description
64559view17:34, 29 May 2013PjaiswalOntology Term : 'plant cell' added !
64558view17:33, 29 May 2013PjaiswalOntology Term : 'signaling pathway' added !
64557view17:32, 29 May 2013PjaiswalOntology Term : 'regulatory pathway' added !
64555view17:31, 29 May 2013PjaiswalModified description
64554view17:22, 29 May 2013PjaiswalAdded citation to this work
58395view21:49, 12 February 2013MaintBotModified categories
54398view05:27, 29 November 2012KhanspersReverted to version '19:21, 27 August 2012' by Khanspers
53404view20:08, 6 November 2012KhanspersDeleted pathway: duplicate
51047view19:21, 27 August 2012JaiswallabModified description
51040view18:54, 27 August 2012JaiswallabModified description
50605view05:26, 18 August 2012JaiswallabNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
AAP6GeneProductAT5G49630 (TAIR) Projected from TAIR, homologous to LOC_Os07g04180 (Permease).
ABI3GeneProductAT3G24650 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g68370 (VP1).
  • Interaction with Wsi18 and Lea3 by orthology to H vulgare

    ABA-related Seed dormancy

    Interaction with Wsi18 and Lea3 by orthology to H vulgare
ABI5GeneProductAT2G36270 (TAIR) Projected from TAIR, homologous to LOC_Os01g64000 (ABI5).
ADG1GeneProductAT5G48300 (TAIR)
  • Projected from TAIR, homologous to LOC_Os08g25734 (APS2a).
  • Also called AGPS2, ADP-glucose Pyrophosphorylase small subunit 2;

    SSP genes examined was significantly suppressed in KD-RISBZ1/KD-RPBF has two different transcripts= a:in leaf, b:in endosperm; binding with APL2 and Down regulation by RISBZ1 only happens with APS2b, binding with APL1 only happens with APS2a

    expression diminished during grain filling at high temperatures
ADG2GeneProductAT5G19220 (TAIR) Projected from TAIR, homologous to LOC_Os03g52460 (APL3).
ADK1GeneProductAT3G09820 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g41590 (OsAK).
  • Adenosine kinase
ADK2GeneProductAT5G03300 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g41590 (OsAK).
  • Adenosine kinase
ADL6GeneProductAT1G10290 (TAIR) Projected from TAIR, homologous to LOC_Os06g13820 (Dynamin).
AGGeneProductAT4G18960 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g10504 (MADS 3).
  • Also called RAG
AGD6GeneProductAT3G53710 (TAIR) Projected from TAIR, homologous to LOC_Os03g17020 (ADP ribosylation GTPase).
AGL14GeneProductAT4G11880 (TAIR) Projected from TAIR, homologous to LOC_Os10g39130 (MADS 56).
AGL19GeneProductAT4G22950 (TAIR) Projected from TAIR, homologous to LOC_Os10g39130 (MADS 56).
AGL44GeneProductAT2G14210 (TAIR) Projected from TAIR, homologous to LOC_Os02g49840 (MADS 57).
AGL6GeneProductAT2G45650 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g45770 (MADS 6).
  • Also called MFO1
AGL8GeneProductAT5G60910 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g41370 (MADS 18).
  • Also called MADS 28
AHA1GeneProductAT2G18960 (TAIR) Projected from TAIR, homologous to LOC_Os04g56160 (Plasma membrane ATPase).
AHOXGeneProductLOC_Os10g39030 (Rice Ensembl Gene) Associated with HOX family protein, expressed (UniProt Q8LN25)- Assigned as AHOX by Nemeth D and Hanumappa M (08/19/2010)
ALDH10A8GeneProductAT1G74920 (TAIR)
  • Projected from TAIR, homologous to LOC_Os08g32870 (BADH2).
  • SCENTED KERNEL 2 (fragrance) betaine-aldehyde dehydrogenase 2
ALDH11A3GeneProductAT2G24270 (TAIR) Projected from TAIR, homologous to LOC_Os08g34210 (NADPH G-3-P dh).
ALDH7B4GeneProductAT1G54100 (TAIR)
  • Projected from TAIR, homologous to LOC_Os09g26880 (ALDH7).
  • Needed for seed maturation and viability.

    Expression Patterns during Seed Development Correspond with Pigment Accumulation Patterns in Seeds

    Plays a role in the removal of MDA that forms during seed desiccation
AMY3GeneProductAT1G69830 (TAIR) Projected from TAIR, homologous to LOC_Os01g51754 (Amy4A).
AP1GeneProductAT1G69120 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g01820 (MADS 15).
  • Also called RAP1A
AP3GeneProductAT3G54340 (TAIR) Projected from TAIR, homologous to LOC_Os06g49840 (MADS 16).
APG2GeneProductAT2G01110 (TAIR) Projected from TAIR, homologous to LOC_Os01g31680 (TATC).
APL1GeneProductLOC_Os05g50380 (Rice Ensembl Gene) ADP-glucose Pyrophosphorylase large subunit 1
APL2GeneProductLOC_Os01g44220 (Rice Ensembl Gene) ADP-glucose Pyrophosphorylase large subunit 2, binding only happens with APS2b

SSP genes examined was significantly suppressed in KD-RISBZ1/KD-RPBF

expression diminished during grain filling at high temperatures
APL4/ AGPL4GeneProductLOC_Os07g13980 (Rice Ensembl Gene)
APRL4GeneProductAT1G34780 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g51850 (APRL3).
  • Disulfide Isomerase
APS1GeneProductLOC_Os09g12660 (Rice Ensembl Gene) ADP-glucose Pyrophosphorylase small subunit 1  expression diminished during grain filling at high temperatures
APT1GeneProductAT1G27450 (TAIR)
  • Projected from TAIR, homologous to LOC_Os12g39860 (APT1).
  • Adenine phosphoribosyltransferase 1
APUM11GeneProductAT4G08840 (TAIR)
  • Projected from TAIR, homologous to LOC_Os12g31000 (Pumilio ).
  • Leucine rich repeat
ARD1GeneProductAT4G14716 (TAIR)
  • Projected from TAIR, homologous to LOC_Os10g28350 (SIP2).
  • 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 Ethylene induced
AREB3GeneProductAT3G56850 (TAIR) Projected from TAIR, homologous to LOC_Os05g41070 (AREB).
ARF1GeneProductLOC_Os11g32110 (Rice Ensembl Gene)
ASKTHETAGeneProductAT4G00720 (TAIR) Projected from TAIR, homologous to LOC_Os10g37740 (Shaggy kinase).
ASP1GeneProductAT2G37550 (TAIR) Projected from TAIR, homologous to LOC_Os03g17020 (ADP ribosylation GTPase).
AT1G03670GeneProductAT1G03670 (TAIR)
  • Projected from TAIR, homologous to LOC_Os09g17329 (Ankyrin-like protein).
  • Iron transporter
AT1G04770GeneProductAT1G04770 (TAIR) Projected from TAIR, homologous to LOC_Os05g43040 (Male sterility protein).
AT1G06890GeneProductAT1G06890 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g07310 (GPT2-B).
  • Assigned as GPT-B by Nemeth D and Hanumappa M (10/21/2010)
AT1G09640GeneProductAT1G09640 (TAIR)
  • Projected from TAIR, homologous to LOC_Os06g37440 (EF-1-g3).
  • eEF-1B gamma 3
AT1G11900GeneProductAT1G11900 (TAIR)
  • Projected from TAIR, homologous to LOC_Os05g40320 (PPR bZIP).
  • Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)
AT1G12760GeneProductAT1G12760 (TAIR) Projected from TAIR, homologous to LOC_Os04g48050 (Ring ZF).
AT1G12840GeneProductAT1G60070 (TAIR) Projected from TAIR, homologous to LOC_Os06g07090 (AP-1gamma-1).
AT1G14710GeneProductAT1G14710 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g13560 (HRGP).
  • Hydroxyproline-rich glycoprotein family protein-UniPret ID
AT1G20810GeneProductAT1G20810 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g02550 (UGP ).
AT1G21440GeneProductAT1G21440 (TAIR)
  • Projected from TAIR, homologous to LOC_Os12g08760 (OsCCP ).
  • Assigned as OsCCP by Nemeth D and Hanumappa M (10/21/2010) carboxyvinyl-carboxyphosphonate phosphorylmutase
AT1G22040GeneProductAT1G22040 (TAIR)
  • Projected from TAIR, homologous to LOC_Os10g21930 (FBK21).
  • F-box domain and kelch repeat containing protein
AT1G22410GeneProductAT1G22410 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g27230 (DAHPS1).
  • 3-deoxy-D-arabino heptulosonate-7-phosphate synthase 1
AT1G27461GeneProductAT1G27461 (TAIR) Projected from TAIR, homologous to LOC_Os07g39700 (Sdr4).
AT1G30230GeneProductAT1G30230 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g29260 ( EF-1-d2).
  • Elongation factor 1 beta 2
AT1G32430GeneProductAT1G32430 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g35050 (OsFBX237).
  • Cdc2-related protein kinase
AT1G33260GeneProductAT1G33260 (TAIR) Projected from TAIR, homologous to LOC_Os02g43290 (Ser/thr PK).
AT1G47390GeneProductAT1G47390 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g35050 (OsFBX237).
  • Cdc2-related protein kinase
AT1G47640GeneProductAT1G47640 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g55730 (SSA2 ).
  • 10 kDa prolamin precursor
AT1G48630GeneProductAT1G48630 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g49290 (RACK1A).
  • Also called GPB-LR/ RWD
AT1G48860GeneProductAT1G48860 (TAIR)
  • Projected from TAIR, homologous to LOC_Os06g04280 ( EPSPS1).
  • 5-Enolpyruvylshikimate-3-phosphate synthase 1
AT1G55550GeneProductAT1G55550 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g15540 (Flavin-containing monooxygenase).
AT1G56560GeneProductAT1G56560 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g22900 (INV2).
  • Neutral/alkaline invertase 2 Assigned as NA-INV1 by Nemeth D and Hanumappa M (10/21/2010)
AT1G56700GeneProductAT1G56700 (TAIR) Projected from TAIR, homologous to LOC_Os03g25270 (Pyrrolidone-Carboxylpeptidase).
AT1G57720GeneProductAT1G57720 (TAIR)
  • Projected from TAIR, homologous to LOC_Os06g37440 (EF-1-g3).
  • eEF-1B gamma 3
AT1G60900GeneProductAT1G60900 (TAIR) Projected from TAIR, homologous to LOC_Os11g41820 (U2 snRNP).
AT1G62660GeneProductAT1G62660 (TAIR) Projected from TAIR, homologous to LOC_Os04g45290 (Vin1).
AT1G63170GeneProductAT1G63170 (TAIR) Projected from TAIR, homologous to LOC_Os04g48050 (Ring ZF).
AT1G63220GeneProductAT1G63220 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g44870 (ERG3).
  • RPP16
AT1G67890GeneProductAT1G67890 (TAIR)
  • Projected from TAIR, homologous to LOC_Os12g37570 (LOC_Os12g37570).
  • Protein Kinase-UniProt ID
AT1G70820GeneProductAT1G70820 (TAIR)
  • Projected from TAIR, homologous to LOC_Os06g28194 (phosphomannomutase).
  • Soluble epoxide hydrolase
AT1G74240GeneProductAT1G74240 (TAIR) Projected from TAIR, homologous to LOC_Os03g11510 (Mitrochondrial carrier).
AT1G76660GeneProductAT1G76660 (TAIR) Projected from TAIR, homologous to LOC_Os01g01390 (Ring Finger).
AT1G77060GeneProductAT1G77060 (TAIR)
  • Projected from TAIR, homologous to LOC_Os12g08760 (OsCCP ).
  • Assigned as OsCCP by Nemeth D and Hanumappa M (10/21/2010) carboxyvinyl-carboxyphosphonate phosphorylmutase
AT1G77670GeneProductAT1G77670 (TAIR)
  • Projected from TAIR, homologous to LOC_Os09g28050 (IDI4).
  • asparate aminotransferase
AT1G78420GeneProductAT1G78420 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g14720 (GW2).
  • encodes a RING protein with E3 ubiquitin ligase activity
AT1G80570GeneProductAT1G80570 (TAIR)
  • Projected from TAIR, homologous to LOC_Os12g33230 (FBL60).
  • Leucine rich repeat
AT2G05830GeneProductAT2G05830 (TAIR)
  • Projected from TAIR, homologous to LOC_Os11g11050 (IDI2).
  • Initiation factor 2 subunit family protein
AT2G14710GeneProductAT2G14710 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g35050 (OsFBX237).
  • Cdc2-related protein kinase
AT2G17550GeneProductAT2G17550 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g03860 (LOC_Os03g03860).
  • Unknown-UniProt ID
AT2G18110GeneProductAT2G18110 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g29260 ( EF-1-d2).
  • Elongation factor 1 beta 2
AT2G21130GeneProductAT2G21130 (TAIR) Projected from TAIR, homologous to LOC_Os02g02890 (Cyp2).
AT2G24420GeneProductAT2G24420 (TAIR) Projected from TAIR, homologous to LOC_Os08g40790 (bip129 ).
AT2G25220GeneProductAT2G25220 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g08530 (LOC_Os02g08530).
  • Protein Kinase-UniProt ID
AT2G28440GeneProductAT2G28440 (TAIR) Projected from TAIR, homologous to LOC_Os05g13940 (PRP1).
AT2G30460GeneProductAT2G30460 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g07310 (GPT2-B).
  • Assigned as GPT-B by Nemeth D and Hanumappa M (10/21/2010)
AT2G35840GeneProductAT2G35840 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g27880 (SPP1).
  • sucrose-phosphatase 1
AT2G35900GeneProductAT2G35900 (TAIR) Projected from TAIR, homologous to LOC_Os01g56470 (Mal d 1-AP).
AT2G36950GeneProductAT2G36950 (TAIR)
  • Projected from TAIR, homologous to LOC_Os10g30450 (LOC_Os10g30450 ).
  • Unknown-UniProt ID
AT2G39300GeneProductAT2G39300 (TAIR) Projected from TAIR, homologous to LOC_Os03g20580 (Centromere protein).
AT2G42130GeneProductAT2G42130 (TAIR) Projected from TAIR, homologous to LOC_Os04g57020 (LOC_Os04g57020).
AT2G45300GeneProductAT2G45300 (TAIR)
  • Projected from TAIR, homologous to LOC_Os06g04280 ( EPSPS1).
  • 5-Enolpyruvylshikimate-3-phosphate synthase 1
AT2G46140GeneProductAT2G46140 (TAIR) Projected from TAIR, homologous to LOC_Os05g50710 (LEA 14-A).
AT2G46420GeneProductAT2G46420 (TAIR) Projected from TAIR, homologous to LOC_Os01g12080 (LOC_Os01g12080).
AT2G47060GeneProductAT2G47060 (TAIR) Projected from TAIR, homologous to LOC_Os05g04520 (Pto kinase Interactor 1).
AT3G01490GeneProductAT3G01490 (TAIR)
  • Projected from TAIR, homologous to LOC_Os05g50190 (LOC_Os05g50190).
  • Protein Kinase-UniProt ID
AT3G02930GeneProductAT3G02930 (TAIR) Projected from TAIR, homologous to LOC_Os05g02820 (Myosin like).
AT3G05500GeneProductAT3G05500 (TAIR) Projected from TAIR, homologous to LOC_Os07g47510 (Stress-related protein).
AT3G06620GeneProductAT3G06620 (TAIR)
  • Projected from TAIR, homologous to LOC_Os12g37570 (LOC_Os12g37570).
  • Protein Kinase-UniProt ID
AT3G12630GeneProductAT3G12630 (TAIR)
  • Projected from TAIR, homologous to LOC_Os08g39450 (SAP11).
  • Also called ZFP60
AT3G15670GeneProductAT3G15670 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g50910 (Wsi18).
  • Interaction with TRAB1 and VP1 by orthology to H vulgare

    ABA and GA induced water stress + cold stress member of the group 3 Lea family

    Wsi18 promoter is active in the whole grain
AT3G16580GeneProductAT3G16580 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g35050 (OsFBX237).
  • Cdc2-related protein kinase
AT3G17850GeneProductAT3G17850 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g50390 (LOC_Os03g50390).
  • Protein Kinase-UniProt ID
AT3G20800GeneProductAT3G20800 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g52340 (Rcd1-L).
  • Also given LOC_Os07g37790 and LOC_Os03g57130
AT3G29010GeneProductAT3G29010 (TAIR)
  • Projected from TAIR, homologous to LOC_Os08g33810 (LPLA).
AT3G29130GeneProductAT3G29130 (TAIR) Projected from TAIR, homologous to LOC_Os03g43910 ( LOC_Os03g43910).
AT3G29320GeneProductAT3G29320 (TAIR) Projected from TAIR, homologous to LOC_Os03g55090 (PHOL ).
AT3G44620GeneProductAT3G44620 (TAIR) Projected from TAIR, homologous to LOC_Os08g44320 (Phosphotyrosine).
AT3G49190GeneProductAT3G49190 (TAIR) Projected from TAIR, homologous to LOC_Os05g48260 (RIR 1b).
AT3G49200GeneProductAT3G49200 (TAIR) Projected from TAIR, homologous to LOC_Os05g48260 (RIR 1b).
AT3G49210GeneProductAT3G49210 (TAIR) Projected from TAIR, homologous to LOC_Os05g48260 (RIR 1b).
AT3G54030GeneProductAT3G54030 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g61010 (TPR-PK).
  • Putative protein kinase
AT3G55060GeneProductAT3G55060 (TAIR) Projected from TAIR, homologous to LOC_Os03g20580 (Centromere protein).
AT3G55940GeneProductAT3G55940 (TAIR) Projected from TAIR, homologous to LOC_Os07g49330 (Phospholipase C).
AT3G60320GeneProductAT3G60320 (TAIR)
  • Projected from TAIR, homologous to LOC_Os10g41310 (DUF630).
  • Symbol assigned by Nemeth D and Hanumappa M (08/19/2010)
AT3G61700GeneProductAT3G61700 (TAIR) Projected from TAIR, homologous to LOC_Os01g12080 (LOC_Os01g12080).
AT4G03460GeneProductAT4G03460 (TAIR)
  • Projected from TAIR, homologous to LOC_Os09g17329 (Ankyrin-like protein).
  • Iron transporter
AT4G03500GeneProductAT4G03500 (TAIR)
  • Projected from TAIR, homologous to LOC_Os09g17329 (Ankyrin-like protein).
  • Iron transporter
AT4G10390GeneProductAT4G10390 (TAIR) Projected from TAIR, homologous to LOC_Os02g43290 (Ser/thr PK).
AT4G17100GeneProductAT4G17100 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g45910 (Serine protease).
  • Os04g0542900,
AT4G19200GeneProductAT4G19200 (TAIR) Projected from TAIR, homologous to LOC_Os05g02780 (grpA3).
AT4G19720GeneProductAT4G19720 (TAIR)
  • Projected from TAIR, homologous to LOC_Os11g27400 (GlyH).
  • Chitinase
AT4G19750GeneProductAT4G19750 (TAIR)
  • Projected from TAIR, homologous to LOC_Os11g27400 (GlyH).
  • Chitinase
AT4G19760GeneProductAT4G19760 (TAIR)
  • Projected from TAIR, homologous to LOC_Os11g27400 (GlyH).
  • Chitinase
AT4G19800GeneProductAT4G19800 (TAIR)
  • Projected from TAIR, homologous to LOC_Os11g27400 (GlyH).
  • Chitinase
AT4G19810GeneProductAT4G19810 (TAIR)
  • Projected from TAIR, homologous to LOC_Os11g27400 (GlyH).
  • Chitinase
AT4G19820GeneProductAT4G19820 (TAIR)
  • Projected from TAIR, homologous to LOC_Os11g27400 (GlyH).
  • Chitinase
AT4G22240GeneProductAT4G22240 (TAIR) Projected from TAIR, homologous to LOC_Os09g04790 (Fibrillin).
AT4G24060GeneProductAT4G24060 (TAIR) Projected from TAIR, homologous to LOC_Os04g47990 (S-REP ).
AT4G24590GeneProductAT4G24590 (TAIR) Projected from TAIR, homologous to LOC_Os02g54080 (MADS-box IL).
AT4G25160GeneProductAT4G25160 (TAIR) Projected from TAIR, homologous to LOC_Os06g04880 (Ser/thr PK).
AT4G31340GeneProductAT4G31340 (TAIR) Projected from TAIR, homologous to LOC_Os08g40790 (bip129 ).
AT4G32000GeneProductAT4G32000 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g08530 (LOC_Os02g08530).
  • Protein Kinase-UniProt ID
AT4G32260GeneProductAT4G32260 (TAIR) Projected from TAIR, homologous to LOC_Os03g17070 (ATP synthase).
AT4G32600GeneProductAT4G32600 (TAIR) Projected from TAIR, homologous to LOC_Os02g54624 (ATP synthetase a).
AT4G33150GeneProductAT4G33150 (TAIR) Projected from TAIR, homologous to LOC_Os02g54254 (OsLKR).
AT5G02230GeneProductAT5G02230 (TAIR) Projected from TAIR, homologous to LOC_Os03g16670 (HAD-like).
AT5G05010GeneProductAT5G05010 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g61710 (Delta-COP).
  • Delta coatamer
AT5G16730GeneProductAT5G16730 (TAIR) Projected from TAIR, homologous to LOC_Os05g02820 (Myosin like).
AT5G25940GeneProductAT5G25940 (TAIR) Projected from TAIR, homologous to LOC_Os06g05010 (ENOD93-1).
AT5G35460GeneProductAT5G35460 (TAIR) Projected from TAIR, homologous to LOC_Os01g40280 (RSR1).
AT5G36160GeneProductAT5G36160 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g20360 (NAAT1).
  • nicotianamine aminotransferase
AT5G42740GeneProductAT5G42740 (TAIR)
  • Projected from TAIR, homologous to LOC_Os06g14510 (PGI-b).
AT5G44080GeneProductAT5G44080 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g64730 (OSE2).
  • bZIP transcription factor domain containing protein
AT5G47480GeneProductAT5G47480 (TAIR) Projected from TAIR, homologous to LOC_Os06g01650 (FERTILLIN).
AT5G47490GeneProductAT5G47490 (TAIR) Projected from TAIR, homologous to LOC_Os06g01650 (FERTILLIN).
AT5G48250GeneProductAT5G48250 (TAIR) Projected from TAIR, homologous to LOC_Os02g49230 (CCT/B-box zinc finger ).
AT5G49710GeneProductAT5G49710 (TAIR) Projected from TAIR, homologous to LOC_Os02g54080 (MADS-box IL).
AT5G50100GeneProductAT5G50100 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g57310 (Thioredoxin-like).
  • thiol-disulphide oxidoreductase DCC
AT5G52580GeneProductAT5G52580 (TAIR) Projected from TAIR, homologous to LOC_Os02g48000 (DEK1).
AT5G53050GeneProductAT5G53050 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g19650 (Hydrolase ).
  • Iron/ascorbate oxidoreductases
AT5G53390GeneProductAT5G53390 (TAIR) Projected from TAIR, homologous to LOC_Os05g48260 (RIR 1b).
AT5G59010GeneProductAT5G59010 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g61010 (TPR-PK).
  • Putative protein kinase
AT5G59210GeneProductAT5G59210 (TAIR) Projected from TAIR, homologous to LOC_Os03g16120 (Myosin like).
AT5G59750GeneProductAT5G59750 (TAIR)
  • Projected from TAIR, homologous to LOC_Os05g38570 (GTP cyclohydrolase).
  • GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase
AT5G61550GeneProductAT5G61550 (TAIR) Projected from TAIR, homologous to LOC_Os06g04880 (Ser/thr PK).
ATAF1GeneProductAT1G01720 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g66120 (SNAC2).
  • ABA-related
ATAMY1GeneProductAT4G25000 (TAIR) Projected from TAIR, homologous to LOC_Os08g36900 (Amy3E).
ATAPRL6GeneProductAT4G08930 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g51850 (APRL3).
  • Disulfide Isomerase
ATARD2GeneProductAT4G14710 (TAIR)
  • Projected from TAIR, homologous to LOC_Os10g28350 (SIP2).
  • 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 Ethylene induced
ATBETAFRUCT4GeneProductAT1G12240 (TAIR) Projected from TAIR, homologous to LOC_Os04g45290 (Vin1).
ATBT1GeneProductAT4G32400 (TAIR)
  • Projected from TAIR, homologous to LOC_Os05g07900 (BT1-1).
ATDAD1GeneProductAT1G32210 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g32550 (DAD1).
  • Defender against cell death 1
ATERF4GeneProductAT3G15210 (TAIR) Projected from TAIR, homologous to LOC_Os01g58420 (AP37).
ATGSNOR1GeneProductAT5G43940 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g57040 (FDH).
  • Alcohol dehydrogenase class 3; Also called FALDH, GSH-FDH (Glutathione-dependent formaldehyde dehydrogenase)
ATHB12GeneProductAT3G61890 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g45810 (HOX 22).
  • In Cooper et al. 2003 protein sequence provided matches HOX 22, however it was named HOX6 (AF145730)
ATHB7GeneProductAT2G46680 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g45810 (HOX 22).
  • In Cooper et al. 2003 protein sequence provided matches HOX 22, however it was named HOX6 (AF145730)
ATIREG1GeneProductAT2G38460 (TAIR)
  • Projected from TAIR, homologous to LOC_Os06g36450 (ferroportin1).
ATKDSA2GeneProductAT1G16340 (TAIR) Projected from TAIR, homologous to LOC_Os12g10784 (2-d-3-D phosphooctonate aldolase).
ATMTAN2GeneProductAT4G34840 (TAIR)
  • Projected from TAIR, homologous to LOC_Os06g02220 (MTN).
  • Methylthioadenosine/S-adenosyl homocysteine nucleosidase
ATMYC-2GeneProductAT1G63650 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g47080 (RA).
  • seed coat color, endosperm color
ATNAS2GeneProductAT5G56080 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g19427 (NAS1).
  • NA synthase gene 1
ATOPT3GeneProductAT4G16370 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g54000 (Oligopeptide transporter 3).
  • Isp4-like
ATPU1GeneProductAT5G04360 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g08270 (PUL).
  • expression diminished during grain filling at high temperatures
ATSPP1GeneProductAT1G51420 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g27880 (SPP1).
  • sucrose-phosphatase 1
ATVDAC2GeneProductAT5G67500 (TAIR) Projected from TAIR, homologous to LOC_Os03g10510 (VDAC5).
ATXDH1GeneProductAT4G34890 (TAIR) Projected from TAIR, homologous to LOC_Os03g31550 (AOXDH).
Amy2AGeneProductLOC_Os06g49970 (Rice Ensembl Gene) ABA-repressible and GA-inducible
At-A/N-InvEGeneProductAT5G22510 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g32730 (INV3).
  • Neutral/alkaline invertase 3 Assigned as NA-INV1 by Nemeth D and Hanumappa M (10/21/2010)
AtAGAL2GeneProductAT5G08370 (TAIR) Projected from TAIR, homologous to LOC_Os10g35110 (Gal1).
AtHsp90.2GeneProductAT5G56030 (TAIR)
  • Projected from TAIR, homologous to LOC_Os09g30418 (HSP90).
  • Also called HSP81-2
AtHsp90.4GeneProductAT5G56000 (TAIR)
  • Projected from TAIR, homologous to LOC_Os09g30418 (HSP90).
  • Also called HSP81-2
AtPHR1GeneProductAT4G28610 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g25710 (PSRR-L).
  • Phosphate starvation response regulator
AtcwINV4GeneProductAT2G36190 (TAIR) Projected from TAIR, homologous to LOC_Os02g33110 (CIN1).
AtkdsA1GeneProductAT1G79500 (TAIR) Projected from TAIR, homologous to LOC_Os12g10784 (2-d-3-D phosphooctonate aldolase).
BBTI4GeneProductLOC_Os01g03340 (Rice Ensembl Gene) Bowman-Birk type bran trypsin inhibitor
BEIGeneProductLOC_Os06g51084 (Rice Ensembl Gene) expression diminished during grain filling at high temperatures
BHLH038GeneProductAT3G56970 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g72370 (IRO2).
  • basic/helix-loop-helix 56
BHLH039GeneProductAT3G56980 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g72370 (IRO2).
  • basic/helix-loop-helix 56
BHLH100GeneProductAT2G41240 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g72370 (IRO2).
  • basic/helix-loop-helix 56
BMY1GeneProductAT4G15210 (TAIR) Projected from TAIR, homologous to LOC_Os07g35940 (Bam 2).
BMY2GeneProductAT5G45300 (TAIR) Projected from TAIR, homologous to LOC_Os02g03690 (Bam 9).
BMY3GeneProductAT5G18670 (TAIR) Projected from TAIR, homologous to LOC_Os03g22790 (Bam 10).
BMY7GeneProductAT3G23920 (TAIR) Projected from TAIR, homologous to LOC_Os03g04770 (Bam 7).
BMY8GeneProductAT4G17090 (TAIR) Projected from TAIR, homologous to LOC_Os10g41550 (Bam 1).
BMY9GeneProductAT4G00490 (TAIR) Projected from TAIR, homologous to LOC_Os09g39570 (Bam 6).
BT1-2GeneProductLOC_Os02g10800 (Rice Ensembl Gene)
BT3GeneProductAT1G05690 (TAIR) Projected from TAIR, homologous to LOC_Os01g66890 (BTB-TAZ).
BTB/POZ GeneProductLOC_Os10g29390 (Rice Ensembl Gene) 2-keto-3-deoxy-6-phosphogluconate aldolase
BZO2H1GeneProductAT4G02640 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g08420 (RISBZ1).
  • Functionaly redundant and compensatory expression between RISBZI and RPBF. Double Knock-Down mutant (KD-RISBZ1/KD-RPBF) caused most expression change in OsLKR/SDH
BZO2H4GeneProductAT3G54620 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g08420 (RISBZ1).
  • Functionaly redundant and compensatory expression between RISBZI and RPBF. Double Knock-Down mutant (KD-RISBZ1/KD-RPBF) caused most expression change in OsLKR/SDH
Bam 3GeneProductLOC_Os07g35880 (Rice Ensembl Gene)
Bam 8GeneProductLOC_Os01g13550 (Rice Ensembl Gene)
C ALGeneProductAT1G26310 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g54160 (MADS 14).
  • Also called AGL10, RAP1B
C3H1GeneProductLOC_Os01g07930 (Rice Ensembl Gene) Zinc finger CCCH domain-containing protein Glutaredoxin-related
CACTA, En/Spm GeneProductLOC_Os01g09220 (Rice Ensembl Gene)
CALGeneProductAT1G26310 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g01820 (MADS 15).
  • Also called RAP1A
CDF2GeneProductAT5G39660 (TAIR) Projected from TAIR, homologous to LOC_Os07g48570 (AOPBP-L).
CDKA-2GeneProductLOC_Os02g03060 (Rice Ensembl Gene)
CDKA1GeneProductAT3G48750 (TAIR) Projected from TAIR, homologous to LOC_Os03g02680 (CDKA-1).
CF1GeneProductAT1G59610 (TAIR) Projected from TAIR, homologous to LOC_Os06g13820 (Dynamin).
CIB22GeneProductAT4G34700 (TAIR)
  • Projected from TAIR, homologous to LOC_Os06g50000 (Complex 1L).
  • Assigned as Complex 1L by Nemeth D and Hanumappa M (10/21/2010) complex 1 family protein-like (LYR family)
CIN4GeneProductLOC_Os01g73580 (Rice Ensembl Gene)
CIN5GeneProductLOC_Os04g56930 (Rice Ensembl Gene)
CIN7GeneProductLOC_Os09g08072 (Rice Ensembl Gene)
CKX2GeneProductAT2G19500 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g10110 (CKX2/ Gn1a).
  • Cytokinin oxidase/dehydrogenase 2
CKX4GeneProductAT4G29740 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g10110 (CKX2/ Gn1a).
  • Cytokinin oxidase/dehydrogenase 2
CML23GeneProductAT1G66400 (TAIR) Projected from TAIR, homologous to LOC_Os05g13580 (CML18).
COL9GeneProductAT3G07650 (TAIR) Projected from TAIR, homologous to LOC_Os02g49230 (CCT/B-box zinc finger ).
CR4GeneProductAT3G59420 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g43670 (CR4).
  • homology with Crinkly4
CRINKLY4GeneProductLOC_Os08g28710 (Rice Ensembl Gene)
CRL1GeneProductLOC_Os03g05510 (Rice Ensembl Gene)
CRPGeneProductAT4G00450 (TAIR) Projected from TAIR, homologous to LOC_Os10g40260 (LOC_Os10g40260 ).
CRU1GeneProductAT5G44120 (TAIR) Projected from TAIR, homologous to LOC_Os02g15090 (GluC).
CRU2GeneProductAT1G03880 (TAIR) Projected from TAIR, homologous to LOC_Os02g15090 (GluC).
CSN5AGeneProductAT1G22920 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g56070 (CSN5).
CSN5BGeneProductAT1G71230 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g56070 (CSN5).
CTR1-likeGeneProductLOC_Os09g39320 (Rice Ensembl Gene) Multitransmembrane protein
CWINV2GeneProductAT3G52600 (TAIR) Projected from TAIR, homologous to LOC_Os02g33110 (CIN1).
CYCA1;1GeneProductAT1G44110 (TAIR) Projected from TAIR, homologous to LOC_Os01g13260 (CycA1-1).
CYCB1;2GeneProductAT5G06150 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g59120 (CycB1;1).
  • Seed Shattering
CYCB1;3GeneProductAT3G11520 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g59120 (CycB1;1).
  • Seed Shattering
CYCB1;5GeneProductAT1G34460 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g59120 (CycB1;1).
  • Seed Shattering
CYCD4;1GeneProductAT5G65420 (TAIR) Projected from TAIR, homologous to LOC_Os07g42860 (CycD2-2).
CYCD4;2GeneProductAT5G10440 (TAIR) Projected from TAIR, homologous to LOC_Os07g42860 (CycD2-2).
CYP450GeneProductLOC_Os09g10340 (Rice Ensembl Gene)
CYP716A1GeneProductAT5G36110 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g33480 (taxane 10-beta-hydroxylase).
  • Glutamate synthase cytochrome P450 domain containing protein
CYP76C1GeneProductAT2G45560 (TAIR)
  • Projected from TAIR, homologous to LOC_Os10g08474 (CYP450 ).
  • AP2 transcription factor
CYP76C2GeneProductAT2G45570 (TAIR)
  • Projected from TAIR, homologous to LOC_Os10g08474 (CYP450 ).
  • AP2 transcription factor
CYP76C3GeneProductAT2G45580 (TAIR)
  • Projected from TAIR, homologous to LOC_Os10g08474 (CYP450 ).
  • AP2 transcription factor
CYP76C4GeneProductAT2G45550 (TAIR)
  • Projected from TAIR, homologous to LOC_Os10g08474 (CYP450 ).
  • AP2 transcription factor
CYP76C6GeneProductAT1G33720 (TAIR)
  • Projected from TAIR, homologous to LOC_Os10g08474 (CYP450 ).
  • AP2 transcription factor
DAD2GeneProductAT2G35520 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g32550 (DAD1).
  • Defender against cell death 1
DEPGeneProductLOC_Os11g29370 (Rice Ensembl Gene) Haloacid dehalogenase-like hydrolase family protein
DET3GeneProductAT1G12840 (TAIR) Projected from TAIR, homologous to LOC_Os05g51530 (vATP synthase C).
DIP1GeneProductLOC_Os05g34070 (Rice Ensembl Gene)
DMAS1GeneProductLOC_Os03g13390 (Rice Ensembl Gene) Deoxymugineic acid synthase1
DOF ZFGeneProductLOC_Os02g49440 (Rice Ensembl Gene)
DPE1GeneProductAT5G64860 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g43390 (DPE1).
DPE2GeneProductAT2G40840 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g46790 (DPE2).
  • Also called ALK
DPK4GeneProductLOC_Os06g45300 (Rice Ensembl Gene) Ser/thr/tyr kinase
DREB1BGeneProductLOC_Os09g35010 (Rice Ensembl Gene)
DUF151GeneProductLOC_Os01g50622 (Rice Ensembl Gene)
DUF584GeneProductLOC_Os05g45450 (Rice Ensembl Gene)
Disease resistance-likeGeneProductLOC_Os12g40490 (Rice Ensembl Gene) LIM domain-containing protein, putative, expressed
E3-Ubi LigaseGeneProductLOC_Os05g47780 (Rice Ensembl Gene)
EBP89GeneProductLOC_Os03g08460 (Rice Ensembl Gene) Also called EREBP1
EDM1GeneProductAT4G11260 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g43540 (SGT1).
  • Responds to salicylic acid in chemically induced biotic response
EFEGeneProductAT1G05010 (TAIR) Projected from TAIR, homologous to LOC_Os09g27750 (ACO1).
EIL1GeneProductAT2G27050 (TAIR) Projected from TAIR, homologous to LOC_Os03g20780 (EIL1).
EIN3GeneProductAT3G20770 (TAIR) Projected from TAIR, homologous to LOC_Os03g20780 (EIL1).
ELF9GeneProductAT5G16260 (TAIR) Projected from TAIR, homologous to LOC_Os04g41910 (LOC_Os04g41910).
EM6GeneProductAT2G40170 (TAIR)
  • Projected from TAIR, homologous to LOC_Os05g28210 (OsEM).
EMB2729GeneProductAT3G20440 (TAIR) Projected from TAIR, homologous to LOC_Os06g26234 (BEIII).
ENODL9GeneProductAT3G20570 (TAIR) Projected from TAIR, homologous to LOC_Os06g46740 (PUP2).
ERF15GeneProductAT2G31230 (TAIR) Projected from TAIR, homologous to LOC_Os03g64260 (AP2 domain ).
EXPB2GeneProductLOC_Os10g40710 (Rice Ensembl Gene)
EXPB4GeneProductLOC_Os10g40730 (Rice Ensembl Gene) Beta-expansin-4
FBA1GeneProductAT2G21330 (TAIR)
  • Projected from TAIR, homologous to LOC_Os11g07020 (ALDP).
  • Aldolase
FBA2GeneProductAT4G38970 (TAIR)
  • Projected from TAIR, homologous to LOC_Os11g07020 (ALDP).
  • Aldolase
FIBGeneProductAT4G04020 (TAIR) Projected from TAIR, homologous to LOC_Os09g04790 (Fibrillin).
FKF1GeneProductAT1G68050 (TAIR)
  • Projected from TAIR, homologous to LOC_Os11g34460 (FBO10).
  • Adagio-like protein 3 Cytochrome P450
Flavin containing monooxygenase 3-likeGeneProductLOC_Os09g37620 (Rice Ensembl Gene) Serine/threonine protein kinase
Fructose-6-phosphate 1-phosphotransferaseGeneProductLOC_Os08g25720 (Rice Ensembl Gene)
GABA permeaseGeneProductLOC_Os01g71720 (Rice Ensembl Gene) Amino acid/polyamine transporter
GBSSIIGeneProductLOC_Os07g22930 (Rice Ensembl Gene) Also called ALK
GCPEGeneProductAT5G60600 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g39160 (HDS1).
  • 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1
GDSL-like LipaseGeneProductLOC_Os01g11650 (Rice Ensembl Gene)
GDSL-like LipaseGeneProductLOC_Os10g05088 (Rice Ensembl Gene) SGNH_plant_lipase
GF14AGeneProductLOC_Os08g37490 (Rice Ensembl Gene) WIN2, WIP2
GF14FGeneProductLOC_Os03g50290 (Rice Ensembl Gene) G-box factor 14-3-3 f
GL3GeneProductAT5G41315 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g47080 (RA).
  • seed coat color, endosperm color
GLN1;1GeneProductAT5G37600 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g50240 (GLN1-1).
  • Glutamine synthetase cytosolic isozyme 1-1, also called RGS28 and GS1;1
GLT1GeneProductAT5G53460 (TAIR)
  • Projected from TAIR, homologous to LOC_Os05g48200 (Phosphoglucomutase).
GPA1GeneProductAT2G26300 (TAIR)
  • Projected from TAIR, homologous to LOC_Os05g26890 (GP-alpha-1).
  • G-alpha protein also called GPA1/D1/GA1
GPT2-3GeneProductLOC_Os07g33910 (Rice Ensembl Gene)
GPT2GeneProductAT1G61800 (TAIR)
  • Projected from TAIR, homologous to LOC_Os08g08840 (GPT1).
GRF7GeneProductAT3G02520 (TAIR) Projected from TAIR, homologous to LOC_Os04g38870 (GF14b).
GSR2GeneProductAT1G66200 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g50240 (GLN1-1).
  • Glutamine synthetase cytosolic isozyme 1-1, also called RGS28 and GS1;1
Ghd7 GeneProductLOC_Os07g15770 (Rice Ensembl Gene) yield potential
HCF173GeneProductAT1G16720 (TAIR)
  • Projected from TAIR, homologous to LOC_Os06g49120 (UOS1).
  • NAD(P)-binding/Rossman fold
HMG1GeneProductLOC_Os06g51220 (Rice Ensembl Gene)
HSP40GeneProductLOC_Os03g44620 (Rice Ensembl Gene)
HSP70GeneProductLOC_Os12g14070 (Rice Ensembl Gene)
HSP81-3GeneProductAT5G56010 (TAIR)
  • Projected from TAIR, homologous to LOC_Os09g30418 (HSP90).
  • Also called HSP81-2
IAA1GeneProductLOC_Os01g08320 (Rice Ensembl Gene)
IAA31GeneProductAT3G17600 (TAIR) Projected from TAIR, homologous to LOC_Os01g18360 (IAA4).
IAA9GeneProductLOC_Os02g56120 (Rice Ensembl Gene)
ICLGeneProductAT3G21720 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g34520 (Isocitrate lyase).
IDS1/ MT4AGeneProductLOC_Os12g38270 (Rice Ensembl Gene)
ILR1GeneProductAT3G02875 (TAIR) Projected from TAIR, homologous to LOC_Os03g62060 (IAA amidohydrolase).
IMPA-2GeneProductAT4G16143 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g14950 (Importin alpha-1a).
  • NLS RECEPTOR
ING1GeneProductAT3G24010 (TAIR) Projected from TAIR, homologous to LOC_Os03g04980 (PHD zf).
IREG2GeneProductAT5G03570 (TAIR)
  • Projected from TAIR, homologous to LOC_Os06g36450 (ferroportin1).
ISA1GeneProductAT2G39930 (TAIR)
  • Projected from TAIR, homologous to LOC_Os08g40930 (ISA1).
  • expression diminished during grain filling at high temperatures
ISA2GeneProductAT1G03310 (TAIR) Projected from TAIR, homologous to LOC_Os05g32710 (ISA2).
ISA3GeneProductLOC_Os09g29404 (Rice Ensembl Gene)
IntegraseGeneProductLOC_Os11g11694 (Rice Ensembl Gene)
JA cmtrGeneProductLOC_Os06g22440 (Rice Ensembl Gene) Putative S-adenosyl-L-methionine Subtilisin N-terminal Region
Jasmonate-induced proteinGeneProductLOC_Os12g09700 (Rice Ensembl Gene) Histone H3 (Lys9) methyltransferase
KAB1GeneProductAT1G04690 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g57240 (KOB1).
  • Probable voltage-gated potassium channel subunit beta
KRP3GeneProductLOC_Os11g40030 (Rice Ensembl Gene)
KinesinGeneProductLOC_Os03g43100 (Rice Ensembl Gene)
LEC2GeneProductAT1G28300 (TAIR)
  • Projected from TAIR, homologous to LOC_Os08g01090 (IDEF1).
  • IDE-binding factor 2
LOC_Os01g14110GeneProductLOC_Os01g14110 (Rice Ensembl Gene) Assigned as bHLH-tf by Nemeth D and Hanumappa M (10/21/2010)
LOC_Os01g62740GeneProductLOC_Os01g62740 (Rice Ensembl Gene)
LOC_Os02g53890GeneProductLOC_Os02g53890 (Rice Ensembl Gene)
LOC_Os03g07360GeneProductLOC_Os03g07360 (Rice Ensembl Gene)
LOC_Os03g55130 GeneProductLOC_Os03g55130 (Rice Ensembl Gene)
LOC_Os03g56940GeneProductLOC_Os03g56940 (Rice Ensembl Gene)
LOC_Os04g53350GeneProductLOC_Os04g53350 (Rice Ensembl Gene) Cooper 31122 ID
LOC_Os08g04580GeneProductLOC_Os08g04580 (Rice Ensembl Gene) Thioredoxin
LTPL109GeneProductLOC_Os07g37385 (Rice Ensembl Gene) Extensin_2
Luc7-like 2GeneProductLOC_Os03g62640 (Rice Ensembl Gene) Sarcoplasmic reticulum
MADS 13GeneProductLOC_Os12g10540 (Rice Ensembl Gene) Also called MAF1
MADS 1GeneProductLOC_Os03g11614 (Rice Ensembl Gene) Also called LHS1
MADS 22GeneProductLOC_Os02g52340 (Rice Ensembl Gene) Also called RMD1
MADS 5GeneProductLOC_Os06g06750 (Rice Ensembl Gene)
MCM2GeneProductAT1G44900 (TAIR) Projected from TAIR, homologous to LOC_Os11g29380 (MCM2).
MLA10GeneProductLOC_Os11g16470 (Rice Ensembl Gene) Ankyrin repeat
MPK1GeneProductAT1G10210 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g05480 (MAPK2).
  • UniProt:MAPK2, BIMK1, MAP3, MAPK5, MPK3, MSRMK2
MPK2GeneProductAT1G59580 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g05480 (MAPK2).
  • UniProt:MAPK2, BIMK1, MAP3, MAPK5, MPK3, MSRMK2
MPK5GeneProductLOC_Os03g17700 (Rice Ensembl Gene) UniProt:MPK3, BIMK1, MAP3, MAPK2, MPK5
MT2bGeneProductLOC_Os05g02070 (Rice Ensembl Gene)
MTACP1GeneProductAT2G44620 (TAIR) Projected from TAIR, homologous to LOC_Os07g12150 (Acyl carrier).
MYB33GeneProductAT5G06100 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g59660 (GAMYB).
  • regulates GA induction of Amy2A
MYB65GeneProductAT3G11440 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g59660 (GAMYB).
  • regulates GA induction of Amy2A
NAC 10GeneProductLOC_Os11g03300 (Rice Ensembl Gene)
NAC053GeneProductAT3G10500 (TAIR) Projected from TAIR, homologous to LOC_Os02g57650 (NAC2).
NAC2GeneProductAT5G04410 (TAIR) Projected from TAIR, homologous to LOC_Os02g57650 (NAC2).
NAC4GeneProductLOC_Os01g60020 (Rice Ensembl Gene)
NAC5GeneProductLOC_Os11g08210 (Rice Ensembl Gene) ABA related
NAS1GeneProductAT5G04950 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g19427 (NAS1).
  • NA synthase gene 1
NAS2GeneProductLOC_Os03g19420 (Rice Ensembl Gene) NA synthase gene 2
NAS3GeneProductAT1G09240 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g19427 (NAS1).
  • NA synthase gene 1
NAS4GeneProductAT1G56430 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g19427 (NAS1).
  • NA synthase gene 1
NB-ARC domain proteinGeneProductLOC_Os11g34880 (Rice Ensembl Gene) Jacalin
NFU4GeneProductAT3G20970 (TAIR) Projected from TAIR, homologous to LOC_Os05g06330 (LOC_Os05g06330).
NFXL1GeneProductAT1G10170 (TAIR) Projected from TAIR, homologous to LOC_Os06g14190 (LOC_Os06g14190).
OCP3GeneProductAT5G11270 (TAIR) Projected from TAIR, homologous to LOC_Os06g39906 (LOC_Os06g39906 ).
ORA59GeneProductAT1G06160 (TAIR) Projected from TAIR, homologous to LOC_Os03g64260 (AP2 domain ).
Oryzain alpha ProteaseGeneProductLOC_Os04g55650 (Rice Ensembl Gene)
Oryzain gamma ProteaseGeneProductLOC_Os09g27030 (Rice Ensembl Gene)
OsIAA13GeneProductLOC_Os03g53150 (Rice Ensembl Gene)
OsPRP1GeneProductLOC_Os10g05970 (Rice Ensembl Gene) Proline rich protein
PAKRP1GeneProductAT4G14150 (TAIR) Projected from TAIR, homologous to LOC_Os04g28260 (Phragmoplast kinase).
PAKRP1LGeneProductAT3G23670 (TAIR) Projected from TAIR, homologous to LOC_Os04g28260 (Phragmoplast kinase).
PAP85GeneProductAT3G22640 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g57960 (GB2).
  • Globulin 2
PAT1GeneProductAT5G17990 (TAIR) Projected from TAIR, homologous to LOC_Os03g03450 (Anthranilate Phosphoribosyltransferase).
PBZ1GeneProductLOC_Os12g36880 (Rice Ensembl Gene)
PCNA1GeneProductAT1G07370 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g56130 (PCNA).
  • Proliferating cell nuclear antigen expressed strongly in the shoot apical meristem
PCNA2GeneProductAT2G29570 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g56130 (PCNA).
  • Proliferating cell nuclear antigen expressed strongly in the shoot apical meristem
PGI1GeneProductAT4G24620 (TAIR) Projected from TAIR, homologous to LOC_Os09g29070 (PGI-a).
PGL34GeneProductAT3G58010 (TAIR) Projected from TAIR, homologous to LOC_Os04g57020 (LOC_Os04g57020).
PHD Zn-fingerGeneProductLOC_Os11g12650 (Rice Ensembl Gene)
PHS2GeneProductAT3G46970 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g63270 (PHOH).
  • Also called ALK
PHT4;3GeneProductAT3G46980 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g63290 (PHT4;3).
  • Na+ dep inorg phosphate cotransporter
PIGeneProductAT5G20240 (TAIR) Projected from TAIR, homologous to LOC_Os01g66030 (MADS 2).
PIP5K9GeneProductAT3G09920 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g57660 (PIP5K).
  • Putative phosphatidylinositol-4-phosphate 5-kinase
PKT3GeneProductAT2G33150 (TAIR) Projected from TAIR, homologous to LOC_Os02g57260 (Keto acyl CoA thiolase).
PLC2GeneProductAT3G08510 (TAIR) Projected from TAIR, homologous to LOC_Os07g49330 (Phospholipase C).
PMA2GeneProductAT4G30190 (TAIR) Projected from TAIR, homologous to LOC_Os04g56160 (Plasma membrane ATPase).
PMI1GeneProductAT1G42550 (TAIR) Projected from TAIR, homologous to LOC_Os09g38090 (LOC_Os09g38090).
PP2A-1GeneProductAT1G59830 (TAIR) Projected from TAIR, homologous to LOC_Os02g12580 (PP2A-3).
PP2A-2GeneProductAT1G10430 (TAIR) Projected from TAIR, homologous to LOC_Os02g12580 (PP2A-3).
PP2A-3GeneProductAT2G42500 (TAIR) Projected from TAIR, homologous to LOC_Os03g59060 (PP2A2).
PP2A-4GeneProductAT3G58500 (TAIR) Projected from TAIR, homologous to LOC_Os03g59060 (PP2A2).
PP2A-BGeneProductLOC_Os05g40350 (Rice Ensembl Gene)
PPDKGeneProductAT4G15530 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g31750 (PPDKA).
  • Assigned as GPT-B by Nemeth D and Hanumappa M (10/21/2010)
PPROL 14 EGeneProductLOC_Os05g26377 (Rice Ensembl Gene) 13 kDa Prolamin, also called PPROL 14, PPROL 4A, PPROL 7, PG5a, PROLM 8, PROLM 9, UniProt ID: Q95737
PR1GeneProductAT2G14610 (TAIR) Projected from TAIR, homologous to LOC_Os01g28450 (Pr1b).
PRB1GeneProductAT2G14580 (TAIR) Projected from TAIR, homologous to LOC_Os01g28450 (Pr1b).
PROLM 24GeneProductLOC_Os06g31070 (Rice Ensembl Gene) 16 kDa Prolamin
PROLM26GeneProductLOC_Os07g10580 (Rice Ensembl Gene) Prolamin precursor, also called RP5
PROLM28GeneProductLOC_Os12g16890 (Rice Ensembl Gene) Prolamin precursor, protein also called PPROL 17
PSAD-1GeneProductAT4G02770 (TAIR) Projected from TAIR, homologous to LOC_Os08g44680 (PSI-D).
PSAKGeneProductAT1G30380 (TAIR) Projected from TAIR, homologous to LOC_Os07g05480 (Photosystem I RC subunit ).
PSB29GeneProductAT2G20890 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g37250 (THF1).
  • Inositol phosphatase
PSBCGeneProductATCG00280 (TAIR) Projected from TAIR, homologous to LOC_Os02g24632 (psbC ).
PSBO1GeneProductAT5G66570 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g31690 (PSII-OEP33).
  • No symbol in gramene so OEP33 was assigned. 33kDa oxygen evolving protein of photosystem II
PSBO2GeneProductAT3G50820 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g31690 (PSII-OEP33).
  • No symbol in gramene so OEP33 was assigned. 33kDa oxygen evolving protein of photosystem II
PUM8GeneProductAT1G22240 (TAIR)
  • Projected from TAIR, homologous to LOC_Os12g31000 (Pumilio ).
  • Leucine rich repeat
PitGeneProductLOC_Os01g05620 (Rice Ensembl Gene)
RAB18GeneProductAT5G66400 (TAIR)
  • Projected from TAIR, homologous to LOC_Os11g26790 (Rab21).
  • ABA related water stress + cold stress
RACK1AGeneProductAT1G18080 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g49290 (RACK1A).
  • Also called GPB-LR/ RWD
RACK1C_ATGeneProductAT3G18130 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g49290 (RACK1A).
  • Also called GPB-LR/ RWD
RAG-1GeneProductLOC_Os09g16260 (Rice Ensembl Gene) RISBZ1 + RPBF activated the RAG-1 promoter greater than RPBF alone, though RISBZ1 did not independently affect promoter activity
RALF24GeneProductLOC_Os11g26340 (Rice Ensembl Gene) Rapid ALkalinization Factor
RAR1GeneProductAT5G51700 (TAIR) Projected from TAIR, homologous to LOC_Os02g33180 (RAR1).
RBCLGeneProductATCG00490 (TAIR) Projected from TAIR, homologous to LOC_Os10g21268 (rbcL).
RBGeneProductLOC_Os01g39580 (Rice Ensembl Gene) seed coat color, endosperm color
RCAGeneProductAT2G39730 (TAIR)
  • Projected from TAIR, homologous to LOC_Os11g47970 (RCAA1).
  • RuBisCO activase large isoform
RIC1GeneProductLOC_Os01g37800 (Rice Ensembl Gene)
ROC1GeneProductAT4G38740 (TAIR) Projected from TAIR, homologous to LOC_Os02g02890 (Cyp2).
RPBFGeneProductLOC_Os02g15350 (Rice Ensembl Gene) Functionaly redundant and compensatory expression between RISBZI and RPBF except for OsLKR/SDH double KD mutant (KD-RISBZ1/KD-RPBF) caused most expression change
RPK-TMK1 precursorGeneProductLOC_Os04g58910 (Rice Ensembl Gene) receptor protein kinase TMK1 precursor
RPS20GeneProductLOC_Os06g04290 (Rice Ensembl Gene) P35686
RUBQ1GeneProductLOC_Os02g06640 (Rice Ensembl Gene) Also called Polyubiquitin 6 Also given LOC_Os05g42424 which is not complete
RacGeneProductLOC_Os01g12900 (Rice Ensembl Gene)
Retrotransposon GeneProductLOC_Os12g24050 (Rice Ensembl Gene) Sulfotransferase
SAL1 GeneProductLOC_Os06g43590 (Rice Ensembl Gene)
SAM cmtrGeneProductLOC_Os02g06770 (Rice Ensembl Gene)
SBE2.2GeneProductAT5G03650 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g32660 (SBEIIb).
  • expression diminished during grain filling at high temperatures
SBEIIaGeneProductLOC_Os04g33460 (Rice Ensembl Gene) expression diminished during grain filling at high temperatures
SCL8GeneProductAT5G52510 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g45760 (SCR-like).
  • Scarecrow transcriptional regulator-like protein
SEN1GeneProductAT3G45590 (TAIR)
  • Projected from TAIR, homologous to LOC_Os11g38930 (TRNA endonuclease).
  • catalytic C-terminal domain containing protein
SEN2GeneProductAT5G60230 (TAIR)
  • Projected from TAIR, homologous to LOC_Os11g38930 (TRNA endonuclease).
  • catalytic C-terminal domain containing protein
SEP3GeneProductAT1G24260 (TAIR)
  • Projected from TAIR, homologous to LOC_Os09g32948 (MADS 8).
  • Also called MADS 24
SGT1AGeneProductAT4G23570 (TAIR)
  • Projected from TAIR, homologous to LOC_Os01g43540 (SGT1).
  • Responds to salicylic acid in chemically induced biotic response
SMT1GeneProductAT5G13710 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g10600 (Smt1-1).
  • Cycloartenol-C24-methyltransferase
SNAC1GeneProductLOC_Os03g60080 (Rice Ensembl Gene)
SPKGeneProductLOC_Os10g39420 (Rice Ensembl Gene) required for storage product accumulation during seed development seed-specific protein kinase
SPS-HvGeneProductLOC_Os02g09170 (Rice Ensembl Gene) sucrose-phosphate synthase-Hordeum vulgare= named after table III on Yamakawa et al. (2007)
SPS-SoGeneProductLOC_Os06g43630 (Rice Ensembl Gene) sucrose-phosphate synthase-Saccharum officinarum= named after table III on Yamakawa et al. (2007)
SPS-ZmGeneProductLOC_Os06g42824 (Rice Ensembl Gene) sucrose-phosphate synthase-Zea mays= named after table III on Yamakawa et al. (2007)
SPS1FGeneProductAT5G20280 (TAIR)
  • Projected from TAIR, homologous to LOC_Os08g20660 (SPS-O spp).
  • sucrose-phosphate synthase-Oncidium spp= named after table III on Yamakawa et al. (2007)
SS2GeneProductAT3G01180 (TAIR)
  • Projected from TAIR, homologous to LOC_Os10g30156 (SSIIc).
  • Also called ALK
SS3GeneProductAT1G11720 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g53310 (SSIIIb).
  • Also called ALK
SSA1GeneProductLOC_Os05g41970 (Rice Ensembl Gene) 26 kDa alpha globulin
SSI1GeneProductAT5G24300 (TAIR) Projected from TAIR, homologous to LOC_Os06g06560 (SSI).
SSII-2GeneProductLOC_Os02g51070 (Rice Ensembl Gene) Also called ALK
SSII-3GeneProductLOC_Os06g12450 (Rice Ensembl Gene) expression diminished during grain filling at high temperatures
SSIVGeneProductAT4G18240 (TAIR)
  • Projected from TAIR, homologous to LOC_Os05g45720 (SSIVb).
  • Also called ALK
SSP5GeneProductAT5G11860 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g10690 (CPL1).
  • Seed Shattering
STA1GeneProductAT4G03430 (TAIR)
  • Projected from TAIR, homologous to LOC_Os10g35550 (Du1).
  • dull endosperm-1
SUS1GeneProductAT5G20830 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g42490 (SUS3).
  • Sucrose synthase 3
SUS3GeneProductAT4G02280 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g22120 (SuSy4).
  • Sucrose synthase 4
SUS4GeneProductAT3G43190 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g42490 (SUS3).
  • Sucrose synthase 3
SUS6GeneProductAT1G73370 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g24430 (SuSy6).
  • Sucrose synthase 6
SUT1GeneProductLOC_Os03g07480 (Rice Ensembl Gene)
SUT2GeneProductAT2G02860 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g58080 (SUT4).
SUT3GeneProductLOC_Os10g26470 (Rice Ensembl Gene)
SUT4GeneProductAT1G09960 (TAIR)
  • Projected from TAIR, homologous to LOC_Os12g44380 (SUT2).
SUT5GeneProductLOC_Os02g36700 (Rice Ensembl Gene)
SUVR4GeneProductAT3G04380 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g40770 (SET domain protein).
  • histone-lysine N-methyltransferase
SVPGeneProductAT2G22540 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g08754 (MADS 47).
  • Also called MDP
SWEET3GeneProductAT5G53190 (TAIR)
  • Projected from TAIR, homologous to LOC_Os05g12320 (SWEET3a).
Sci2GeneProductLOC_Os01g42860 (Rice Ensembl Gene)
Sub9GeneProductLOC_Os01g58290 (Rice Ensembl Gene) Amino acid transporters
TAP46GeneProductAT5G53000 (TAIR) Projected from TAIR, homologous to LOC_Os12g04290 (TAP46).
TCH2GeneProductAT5G37770 (TAIR) Projected from TAIR, homologous to LOC_Os05g13580 (CML18).
TEM1GeneProductAT1G25560 (TAIR) Projected from TAIR, homologous to LOC_Os01g49830 (RAV1-like).
TEM2GeneProductAT1G68840 (TAIR) Projected from TAIR, homologous to LOC_Os01g49830 (RAV1-like).
TRAB1GeneProductLOC_Os08g36790 (Rice Ensembl Gene) Interaction with Wsi18 and Lea3 by orthology to H vulgare bZIP transcription factor TRAB1, ABA RESPONSIVE ELEMENT 1=ABA1
TUBB3GeneProductLOC_Os06g46000 (Rice Ensembl Gene) Tubulin beta-3 chain
Terpene cyclasesGeneProductLOC_Os04g27190 (Rice Ensembl Gene)
TyrKGeneProductLOC_Os11g15340 (Rice Ensembl Gene) SAM dependent carboxyl methyltransferase
UBC1GeneProductAT1G14400 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g57790 (RAD6).
  • transcripts of both OsRad6 and OsSgt1 were found to be strongly expressed in the proliferating tissues such SAM
UBC2GeneProductAT2G02760 (TAIR)
  • Projected from TAIR, homologous to LOC_Os03g57790 (RAD6).
  • transcripts of both OsRad6 and OsSgt1 were found to be strongly expressed in the proliferating tissues such SAM
UBP23GeneProductAT5G57990 (TAIR)
  • Projected from TAIR, homologous to LOC_Os06g08530 (bip110).
  • Putative ubiquitin-specific protease 23, BRI1-KD interacting protein 110
UCH3GeneProductAT4G17510 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g43760 (Ubiquitin proteinase).
  • ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
UGPGeneProductAT3G03250 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g02560 (UGP2 ).
UGT74F1GeneProductAT2G43820 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g12960 (UDP-glucosyl transferase).
UGT74F1GeneProductAT2G43840 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g12960 (UDP-glucosyl transferase).
UNE10GeneProductAT4G00050 (TAIR)
  • Projected from TAIR, homologous to LOC_Os10g40740 (bhlh113).
  • basic/helix-loop-helix 113
USP1GeneProductLOC_Os07g47620 (Rice Ensembl Gene) ETFP adenine nucleotide
UbiGeneProductLOC_Os09g31031 (Rice Ensembl Gene)
VIP1-likeGeneProductLOC_Os06g02240 (Rice Ensembl Gene)
VIP1GeneProductAT1G43700 (TAIR) Projected from TAIR, homologous to LOC_Os11g06170 (bZIP).
WCRKC1GeneProductAT5G06690 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g53400 (TLR31).
  • Translational repressor MPT5/PUF4
WRKY 55GeneProductLOC_Os03g20550 (Rice Ensembl Gene)
WRKY11GeneProductAT4G31550 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g21950 (WRKY 51).
  • ABA-inducible & GA-repressible WRKY 51 by itself also represses activation of Amy2A by GAMYB
WRKY17GeneProductAT2G24570 (TAIR)
  • Projected from TAIR, homologous to LOC_Os04g21950 (WRKY 51).
  • ABA-inducible & GA-repressible WRKY 51 by itself also represses activation of Amy2A by GAMYB
WRKY40GeneProductAT1G80840 (TAIR)
  • Projected from TAIR, homologous to LOC_Os02g08440 (WRKY 71).
  • ABA-inducible & GA-repressible

    Interaction between WRKY 51 and 71 enhances the binding affinity of WRKY71 to the Amy32b promoter

    WRKY 71 by itself also represses activation of Amy2A by GAMYB
Wx1GeneProductLOC_Os06g04200 (Rice Ensembl Gene) 30% less pre-mRNA in du1 mutant line

Granule-bound starch synthase

expression diminished during grain filling at high temperatures
XDH2GeneProductAT4G34900 (TAIR) Projected from TAIR, homologous to LOC_Os03g31550 (AOXDH).
YSL15GeneProductLOC_Os02g43410 (Rice Ensembl Gene) YELLOW STRIPE LIKE 15
YSL2GeneProductLOC_Os02g43370 (Rice Ensembl Gene) yellow stripe 1-like
ZF-likeGeneProductLOC_Os01g40990 (Rice Ensembl Gene)
ZIP10GeneProductAT1G31260 (TAIR) Projected from TAIR, homologous to LOC_Os03g46470 (IRT1).
ZOS1-15GeneProductLOC_Os01g62190 (Rice Ensembl Gene) Salt-stress ABA related
anac075GeneProductAT4G29230 (TAIR) Projected from TAIR, homologous to LOC_Os01g09550 (NAC075).
anac103GeneProductAT5G64060 (TAIR)
  • Projected from TAIR, homologous to LOC_Os05g35170 (IDEF2).
  • IDE-binding factor 2
b-1,3-Glucanase GeneProductLOC_Os03g25790 (Rice Ensembl Gene)
bHLH60GeneProductLOC_Os08g04390 (Rice Ensembl Gene) Helix-loop-helix TF
bZIP16GeneProductAT2G35530 (TAIR) Projected from TAIR, homologous to LOC_Os12g13170 (ZIP-1a).
bZIP68GeneProductAT1G32150 (TAIR) Projected from TAIR, homologous to LOC_Os12g13170 (ZIP-1a).
double-stranded beta-helix domainGeneProductLOC_Os11g06370 (Rice Ensembl Gene)
eIFiso4G1GeneProductAT5G57870 (TAIR) Projected from TAIR, homologous to LOC_Os04g42140 (eif(iso)4g).
flavanone 3-hydroxylaseGeneProductLOC_Os08g37456 (Rice Ensembl Gene) 2-oxoglutarate (2OG) - Fe(II) oxygenase
msrB-1GeneProductLOC_Os03g24600 (Rice Ensembl Gene)
  • 2 more IDs found on Gramene. Hence called 1, 2 and 3 to differentiate. LOC_Os06g27760=msrB-2, LOC_Os05g33510=msrB-3 (D Nemeth and M Hanumappa 08/17/2010).
  • Type your comment here
prx61GeneProductLOC_Os04g59190 (Rice Ensembl Gene) Class III peroxidase 61
scpl40GeneProductAT3G63470 (TAIR)
  • Projected from TAIR, homologous to LOC_Os07g46350 (SCP40).
  • Serine carboxypesidase
sks17GeneProductAT5G66920 (TAIR) Projected from TAIR, homologous to LOC_Os07g02810 (Pectinesterase).

Annotated Interactions

No annotated interactions
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